Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006681

Physical Location & Seq

Genomic Coordinates Reverse (-)

46438578 .. 46439144

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0312900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCAATAGACTCTCATGGTTCACTGAGCTTCTCCAAGACTCGCCCACATCTACTATTACTATGCACCATTCTCTGGGCCGCCACTTCGTCGTCACCGCCAACCCGGCCGTGGTCCAACACATCCTCAAGACAAAGTTCCACATCTACCAAAAGGGCGAGTCCTTCCGTACAACTCTCCACGACCTCCTTGGCGACGGGATTTTTAACGCCGACGGTGACAATTAATTGGAAGTTCCAGCGGCAACTCTCCAGCCATGAATTCAACACAAAGTCCCTCAGGAAATTTGTGGAAGACGTGGTGGACACTGAGCTCTACGATCGGCTGATCCCCATTCTATCCAAATCTTCCAGCGACCGAACCGTTCTCGATTTCCAAGACATTCTCCAGCGGTTCGCCTTCGACAACATTTGCCGGATCGGGTTCGGGTACGACCCGGAGTATCTCCTTCCTTCTCTGCCGCAAACTAAATTCGCGGTGGCGTTCGACAATGCGGTCCAGATCAGCAGCGAAAGGTTCAGTTCCATGCGCCCGGTGTGGAAGATCAAACGAGCTCTCGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4101

Protein Analysis

188

Amino Acids

21.21

Weight (kDa)

9.74

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42480 AT5G42480
fragaria_vesca	FvH4_2g39070 FvH4_2g39070 FvH4_2g39070 FvH4_2g39070
malus_domestica	MD15G1016900.v1.1
prunus_persica	Prupe.1G370400_v2.0.a1
pyrus_communis	pycom15g01470 pycom15g01490 pycom15g01500
rosa_chinensis	RchiOBHm_Chr6g0302171
rosa_laevigata	RLG00000011189
rosa_multiflora	Rmu_sc0015826.1_g000001 Rmu_sc0025484.1_g000001 Rmu_sc0031609.1_g000001 Rmu_sc0041248.1_g000001 Rmu_ssc0000160.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166020
rosa_rugosa	Rorug06G0312800 Rorug06G0312900
rosa_samantha	Rh6AG425400 Rh6BG477100 Rh6CG438200 Rh6DG425200
rosa_wichuraiana	Rw6G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccII	CGCG	1 cut(s)	476
AciI	CCGC	7 cut(s)	81, 98, 241, 391, 461, 476, 494
AclWI	GGATC	2 cut(s)	322, 425
AcoI	YGGCCR	1 cut(s)	107
AcsI	RAATTY	3 cut(s)	260, 284, 470
AfaI	GTAC	2 cut(s)	171, 431
AfiI	CCNNNNNNNGG	2 cut(s)	75, 111
AgsI	TTSAA	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	3 cut(s)	30, 313, 554
AluI	AGCT	3 cut(s)	30, 313, 554
Alw21I	GWGCWC	2 cut(s)	315, 556
AlwI	GGATC	2 cut(s)	322, 425
AoxI	GGCC	2 cut(s)	78, 107
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	3 cut(s)	260, 284, 470
AseI	ATTAAT	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	78, 114, 496
AsuC2I	CCSGG	3 cut(s)	106, 437, 533
AsuHPI	GGTGA	2 cut(s)	87, 229
AvaII	GGWCC	2 cut(s)	114, 496
AxyI	CCTNAGG	1 cut(s)	278
BanII	GRGCYC	2 cut(s)	315, 556
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	315, 556
BbvI	GCAGC	1 cut(s)	519
BceAI	ACGGC	1 cut(s)	94
BcnI	CCSGG	3 cut(s)	106, 437, 533
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	81, 242, 461, 508
BlsI	GCNGC	4 cut(s)	82, 243, 462, 509
Bme1390I	CCNGG	3 cut(s)	106, 437, 533
Bme18I	GGWCC	2 cut(s)	114, 496
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	78, 114, 496
BmrFI	CCNGG	3 cut(s)	106, 437, 533
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	2 cut(s)	235, 371
BpuEI	CTTGAG	1 cut(s)	112
BpuMI	CCSGG	3 cut(s)	106, 437, 533
BsaJI	CCNNGG	2 cut(s)	110, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 111
Bse21I	CCTNAGG	1 cut(s)	278
BseDI	CCNNGG	2 cut(s)	110, 189
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	75, 111
BseMII	CTCAG	3 cut(s)	17, 292, 300
BseX3I	CGGCCG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	3 cut(s)	110, 322, 358
BshFI	GGCC	2 cut(s)	80, 109
BsiEI	CGRYCG	3 cut(s)	110, 322, 358
BsiHKAI	GWGCWC	2 cut(s)	315, 556
BsiSI	CCGG	4 cut(s)	106, 415, 437, 533
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	75, 111
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	80, 109
Bsp1286I	GDGCHC	2 cut(s)	315, 556
Bsp143I	GATC	5 cut(s)	319, 327, 417, 501, 543
BspACI	CCGC	7 cut(s)	81, 98, 241, 391, 461, 476, 494
BspANI	GGCC	2 cut(s)	80, 109
BspCNI	CTCAG	3 cut(s)	18, 291, 301
BspFNI	CGCG	1 cut(s)	476
BspPI	GGATC	2 cut(s)	322, 425
BssECI	CCNNGG	2 cut(s)	110, 189
BssMI	GATC	5 cut(s)	319, 327, 417, 501, 543
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	217, 364
BstDEI	CTNAG	3 cut(s)	26, 278, 309
BstDSI	CCRYGG	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	5 cut(s)	322, 330, 420, 504, 546
BstMBI	GATC	5 cut(s)	319, 327, 417, 501, 543
BstMCI	CGRYCG	3 cut(s)	110, 322, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstSCI	CCNGG	3 cut(s)	104, 435, 531
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	300
BstZI	CGGCCG	1 cut(s)	107
Bsu36I	CCTNAGG	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	80, 109
BtgI	CCRYGG	1 cut(s)	110
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	2 cut(s)	23, 306
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	78, 114, 496
Csp6I	GTAC	2 cut(s)	170, 430
CviAII	CATG	3 cut(s)	17, 257, 526
CviJI	RGCY	7 cut(s)	30, 80, 109, 255, 313, 325, 554
CviKI_1	RGCY	7 cut(s)	30, 80, 109, 255, 313, 325, 554
CviQI	GTAC	2 cut(s)	170, 430
DdeI	CTNAG	3 cut(s)	26, 278, 309
DpnI	GATC	5 cut(s)	321, 329, 419, 503, 545
DpnII	GATC	5 cut(s)	319, 327, 417, 501, 543
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
EaeI	YGGCCR	1 cut(s)	107
EagI	CGGCCG	1 cut(s)	107
Ecl136II	GAGCTC	2 cut(s)	313, 554
EclXI	CGGCCG	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	2 cut(s)	315, 556
Eco47I	GGWCC	2 cut(s)	114, 496
Eco52I	CGGCCG	1 cut(s)	107
Eco53kI	GAGCTC	2 cut(s)	313, 554
Eco81I	CCTNAGG	1 cut(s)	278
EcoICRI	GAGCTC	2 cut(s)	313, 554
EcoRI	GAATTC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	315, 556
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	20, 260, 529
FaiI	YATR	4 cut(s)	18, 64, 258, 527
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	3 cut(s)	16, 256, 525
Fnu4HI	GCNGC	4 cut(s)	81, 242, 461, 508
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	2 cut(s)	315, 556
Fsp4HI	GCNGC	4 cut(s)	81, 242, 461, 508
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	4 cut(s)	81, 242, 461, 508
GsuI	CTGGAG	2 cut(s)	235, 371
HaeIII	GGCC	2 cut(s)	80, 109
HapII	CCGG	4 cut(s)	106, 415, 437, 533
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	3 cut(s)	20, 260, 529
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	4 cut(s)	11, 40, 160, 561
HpaII	CCGG	4 cut(s)	106, 415, 437, 533
HphI	GGTGA	2 cut(s)	87, 229
Hpy166II	GTNNAC	2 cut(s)	23, 304
Hpy188I	TCNGA	2 cut(s)	560, 566
Hpy188III	TCNNGA	4 cut(s)	129, 280, 368, 499
Hpy8I	GTNNAC	2 cut(s)	23, 304
Hpy99I	CGWCG	3 cut(s)	94, 199, 217
HpyAV	CCTTC	4 cut(s)	174, 409, 458, 462
HpyCH4III	ACNGT	2 cut(s)	217, 364
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	26, 278, 309
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	20, 260, 529
HspAI	GCGC	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	319, 327, 417, 501, 543
Lsp1109I	GCAGC	1 cut(s)	519
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	93, 217
MalI	GATC	5 cut(s)	321, 329, 419, 503, 545
MboI	GATC	5 cut(s)	319, 327, 417, 501, 543
MboII	GAAGA	3 cut(s)	305, 339, 553
MhlI	GDGCHC	2 cut(s)	315, 556
MluCI	AATT	5 cut(s)	222, 226, 260, 284, 470
MlyI	GAGTC	3 cut(s)	5, 34, 169
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	136, 196, 287
MseI	TTAA	2 cut(s)	206, 225
MspA1I	CMGCKG	2 cut(s)	241, 391
MspI	CCGG	4 cut(s)	106, 415, 437, 533
MspR9I	CCNGG	3 cut(s)	106, 437, 533
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	3 cut(s)	106, 437, 533
NdeII	GATC	5 cut(s)	319, 327, 417, 501, 543
NlaIII	CATG	3 cut(s)	20, 260, 529
NmuCI	GTSAC	2 cut(s)	93, 217
PfeI	GAWTC	1 cut(s)	561
PflMI	CCANNNNNTGG	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	82, 243, 462, 509
Ple19I	CGATCG	1 cut(s)	322
PleI	GAGTC	3 cut(s)	5, 34, 168
PpsI	GAGTC	3 cut(s)	5, 34, 168
PshBI	ATTAAT	1 cut(s)	225
Psp124BI	GAGCTC	2 cut(s)	315, 556
PspPI	GGNCC	3 cut(s)	78, 114, 496
PvuI	CGATCG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	171, 431
RsaNI	GTAC	2 cut(s)	170, 430
SacI	GAGCTC	2 cut(s)	315, 556
SaqAI	TTAA	2 cut(s)	206, 225
SatI	GCNGC	4 cut(s)	81, 242, 461, 508
Sau3AI	GATC	5 cut(s)	319, 327, 417, 501, 543
Sau96I	GGNCC	3 cut(s)	78, 114, 496
SchI	GAGTC	3 cut(s)	5, 34, 169
ScrFI	CCNGG	3 cut(s)	106, 437, 533
SduI	GDGCHC	2 cut(s)	315, 556
SetI	ASST	6 cut(s)	32, 188, 300, 315, 518, 556
SinI	GGWCC	2 cut(s)	114, 496
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	5 cut(s)	222, 226, 260, 284, 470
SsiI	CCGC	7 cut(s)	81, 98, 241, 391, 461, 476, 494
SstI	GAGCTC	2 cut(s)	315, 556
StyD4I	CCNGG	3 cut(s)	104, 435, 531
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	217, 364
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	369, 402, 486
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	5 cut(s)	222, 226, 260, 284, 470
TauI	GCSGC	3 cut(s)	83, 244, 463
TfiI	GAWTC	1 cut(s)	561
Tru1I	TTAA	2 cut(s)	206, 225
Tru9I	TTAA	2 cut(s)	206, 225
TscAI	CASTG	2 cut(s)	30, 313
TseFI	GTSAC	2 cut(s)	93, 217
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	2 cut(s)	93, 217
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	157
TspRI	CASTG	2 cut(s)	30, 313
Van91I	CCANNNNNTGG	1 cut(s)	75
VpaK11BI	GGWCC	2 cut(s)	114, 496
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	3 cut(s)	260, 284, 470
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.