Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031609.1

Orthogroup ID

OG0006681

Physical Location & Seq

Genomic Coordinates Forward (+)

1492 .. 2730

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atggagaccttgacacacttggccattggcttctacaccccaagactctccgcccctttcccacactcaagaaaaccccaaaagctcaggcccgcattatgctccgccagcaaatgggccgaccgcctcctcgccgacttccaattcctcggcgactcctcctcagaccaccattccaccaccgccactctcgctcctcctcctcccaatctgcctcccccactcgctcctcccgagcgccacgtgtccgtccccctcgacttctaccaggtactcggcacccagtcgcatttcctcggcgacgggattaggcgagcttacgaggctagggcttcgaagccgcctcagtacggcttcacccaagacgctttggtcagccggagacagattctccaggccgcctgcgaaaccctagccgaccctgcctccagaagagagtacaatcagtccctcgttgaagacgaagacggaacaattctcaccgacgttccttttgataaggttcctggagctctttgtgtgctgcaagaagctggaaagacggagctggttcttcaaattgggcacagtttgctgagagagaggctgcccaaatcgttcaagcaagatgtggttttggtgatggcacttgcttatgttgacatgtcgagggacgcaatggcattgtccccaccggattttattcagggttgtgaagtgctcgagagggctttgaagctcttgcaggaggaaggtgctagcagccttgcacctgatcttcagtcacaaattgacgagacactggaagagatcaccccacgttgcattttggaacttctaggtttaccccttgatgaggactaccaatcaagaagggaagagggcctccgtggtgtccgaaacatattgtggtctgttggaggaggcggagcagttgctcttgctgggggattcacccgtgacagtttcctgaacgaggtctttttacgaatgactgcagctgaacaggtagcctcattccctctgttaatttcttcccatgatctatatgcttcttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4101

Protein Analysis

346

Amino Acids

38.03

Weight (kDa)

5.11

Isoelectric Point (pI)

64.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42480 AT5G42480
fragaria_vesca	FvH4_2g39070 FvH4_2g39070 FvH4_2g39070 FvH4_2g39070
malus_domestica	MD15G1016900.v1.1
prunus_persica	Prupe.1G370400_v2.0.a1
pyrus_communis	pycom15g01470 pycom15g01490 pycom15g01500
rosa_chinensis	RchiOBHm_Chr6g0302171
rosa_laevigata	RLG00000011189
rosa_multiflora	Rmu_sc0015826.1_g000001 Rmu_sc0025484.1_g000001 Rmu_sc0031609.1_g000001 Rmu_sc0041248.1_g000001 Rmu_ssc0000160.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166020
rosa_rugosa	Rorug06G0312800 Rorug06G0312900
rosa_samantha	Rh6AG425400 Rh6BG477100 Rh6CG438200 Rh6DG425200
rosa_wichuraiana	Rw6G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	114
AciI	CCGC	8 cut(s)	51, 93, 105, 124, 183, 341, 399, 906
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	743
AcvI	CACGTG	1 cut(s)	244
AfaI	GTAC	3 cut(s)	273, 350, 440
AfiI	CCNNNNNNNGG	4 cut(s)	114, 350, 835, 955
AflIII	ACRYGT	2 cut(s)	243, 642
AgsI	TTSAA	4 cut(s)	458, 557, 601, 715
AjnI	CCWGG	3 cut(s)	267, 393, 505
AluBI	AGCT	7 cut(s)	85, 317, 512, 533, 547, 718, 980
AluI	AGCT	7 cut(s)	85, 317, 512, 533, 547, 718, 980
Alw21I	GWGCWC	2 cut(s)	514, 702
Alw26I	GTCTC	2 cut(s)	376, 770
Ama87I	CYCGRG	2 cut(s)	233, 701
AoxI	GGCC	5 cut(s)	21, 89, 117, 396, 862
ApeKI	GCWGC	4 cut(s)	523, 586, 741, 977
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	90, 117, 862
AsuHPI	GGTGA	5 cut(s)	349, 472, 631, 784, 925
AsuII	TTCGAA	1 cut(s)	335
AsuNHI	GCTAGC	1 cut(s)	737
AvaI	CYCGRG	2 cut(s)	233, 701
BaeGI	GKGCMC	1 cut(s)	567
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	514
BbrPI	CACGTG	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	465, 471
Bbv12I	GWGCWC	2 cut(s)	514, 702
BbvI	GCAGC	4 cut(s)	510, 573, 753, 989
BccI	CCATC	1 cut(s)	616
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	3 cut(s)	269, 395, 507
BcoDI	GTCTC	2 cut(s)	376, 770
BfaI	CTAG	4 cut(s)	327, 413, 738, 818
BfmI	CTRYAG	1 cut(s)	975
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	6 cut(s)	341, 399, 524, 587, 742, 978
BlsI	GCNGC	6 cut(s)	342, 400, 525, 588, 743, 979
Bme1390I	CCNGG	3 cut(s)	269, 395, 507
BmeT110I	CYCGRG	2 cut(s)	233, 701
BmgT120I	GGNCC	3 cut(s)	90, 117, 862
BmiI	GGNNCC	2 cut(s)	280, 504
BmrFI	CCNGG	3 cut(s)	269, 395, 507
BmrI	ACTGGG	1 cut(s)	277
BmtI	GCTAGC	1 cut(s)	741
BmuI	ACTGGG	1 cut(s)	277
BpiI	GAAGAC	2 cut(s)	465, 471
BpmI	CTGGAG	3 cut(s)	377, 412, 528
Bpu10I	CCTNAGC	1 cut(s)	86
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	148, 295, 868
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	6 cut(s)	178, 208, 375, 405, 410, 440
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 350, 835, 955
Bse1I	ACTGG	2 cut(s)	283, 786
Bse3DI	GCAATG	1 cut(s)	663
BseBI	CCWGG	3 cut(s)	269, 395, 507
BseDI	CCNNGG	3 cut(s)	148, 295, 868
BseLI	CCNNNNNNNGG	4 cut(s)	114, 350, 835, 955
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	4 cut(s)	100, 177, 359, 566
BseNI	ACTGG	2 cut(s)	283, 786
BseRI	GAGGAG	8 cut(s)	119, 148, 151, 186, 189, 192, 219, 915
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	4 cut(s)	510, 573, 753, 989
BseYI	CCCAGC	1 cut(s)	923
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	23, 91, 119, 398, 864
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	514, 702
BsiHKCI	CYCGRG	2 cut(s)	233, 701
BsiSI	CCGG	2 cut(s)	379, 674
BslFI	GGGAC	4 cut(s)	236, 433, 652, 665
BslI	CCNNNNNNNGG	4 cut(s)	114, 350, 835, 955
BsmAI	GTCTC	2 cut(s)	376, 770
BsmFI	GGGAC	4 cut(s)	236, 433, 652, 665
BsnI	GGCC	5 cut(s)	23, 91, 119, 398, 864
BsoBI	CYCGRG	2 cut(s)	233, 701
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	3 cut(s)	514, 567, 702
Bsp143I	GATC	3 cut(s)	754, 789, 1021
BspACI	CCGC	8 cut(s)	51, 93, 105, 124, 183, 341, 399, 906
BspANI	GGCC	5 cut(s)	23, 91, 119, 398, 864
BspCNI	CTCAG	4 cut(s)	99, 176, 358, 567
BspLI	GGNNCC	2 cut(s)	280, 504
BspMAI	CTGCAG	1 cut(s)	979
BspOI	GCTAGC	1 cut(s)	741
BspT104I	TTCGAA	1 cut(s)	335
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	283, 786
BssECI	CCNNGG	3 cut(s)	148, 295, 868
BssMI	GATC	3 cut(s)	754, 789, 1021
Bst2UI	CCWGG	3 cut(s)	269, 395, 507
Bst4CI	ACNGT	2 cut(s)	569, 944
Bst6I	CTCTTC	3 cut(s)	427, 780, 852
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	5 cut(s)	93, 109, 315, 403, 739
BstDEI	CTNAG	4 cut(s)	86, 163, 345, 575
BstDSI	CCRYGG	1 cut(s)	868
BstENI	CCTNNNNNAGG	2 cut(s)	833, 953
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	3 cut(s)	757, 792, 1024
BstMAI	GTCTC	2 cut(s)	376, 770
BstMBI	GATC	3 cut(s)	754, 789, 1021
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 191, 323, 422, 571
BstNI	CCWGG	3 cut(s)	269, 395, 507
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	3 cut(s)	267, 393, 505
BstSFI	CTRYAG	1 cut(s)	975
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	4 cut(s)	510, 573, 753, 989
BstV2I	GAAGAC	2 cut(s)	465, 471
BsuRI	GGCC	5 cut(s)	23, 91, 119, 398, 864
BtgI	CCRYGG	1 cut(s)	868
BtsIMutI	CAGTG	1 cut(s)	779
Cac8I	GCNNGC	5 cut(s)	93, 109, 315, 403, 739
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	3 cut(s)	90, 117, 862
CseI	GACGC	2 cut(s)	374, 662
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	3 cut(s)	272, 349, 439
CviAII	CATG	2 cut(s)	643, 1019
CviQI	GTAC	3 cut(s)	272, 349, 439
DdeI	CTNAG	4 cut(s)	86, 163, 345, 575
DpnI	GATC	3 cut(s)	756, 791, 1023
DpnII	GATC	3 cut(s)	754, 789, 1021
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	3 cut(s)	427, 780, 852
EarI	CTCTTC	3 cut(s)	427, 780, 852
EciI	GGCGGA	3 cut(s)	40, 94, 921
Ecl136II	GAGCTC	1 cut(s)	512
Eco24I	GRGCYC	1 cut(s)	514
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	743
Eco72I	CACGTG	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	233, 701
EcoICRI	GAGCTC	1 cut(s)	512
EcoNI	CCTNNNNNAGG	2 cut(s)	833, 953
EcoO109I	RGGNCCY	1 cut(s)	862
EcoRII	CCWGG	3 cut(s)	267, 393, 505
EcoT38I	GRGCYC	1 cut(s)	514
FaeI	CATG	2 cut(s)	646, 1022
FaiI	YATR	7 cut(s)	100, 636, 644, 884, 1020, 1027, 1029
FaqI	GGGAC	4 cut(s)	236, 433, 652, 665
FatI	CATG	2 cut(s)	642, 1018
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	6 cut(s)	341, 399, 524, 587, 742, 978
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	6 cut(s)	341, 399, 524, 587, 742, 978
FspBI	CTAG	4 cut(s)	327, 413, 738, 818
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	6 cut(s)	341, 399, 524, 587, 742, 978
GsaI	CCCAGC	1 cut(s)	927
GsuI	CTGGAG	3 cut(s)	377, 412, 528
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	5 cut(s)	23, 91, 119, 398, 864
HapII	CCGG	2 cut(s)	379, 674
HgaI	GACGC	2 cut(s)	374, 662
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	646, 1022
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	45, 155, 388, 930
HpaII	CCGG	2 cut(s)	379, 674
HphI	GGTGA	5 cut(s)	349, 472, 631, 784, 925
Hpy166II	GTNNAC	2 cut(s)	640, 824
Hpy188I	TCNGA	2 cut(s)	166, 878
Hpy188III	TCNNGA	6 cut(s)	69, 233, 429, 703, 849, 949
Hpy8I	GTNNAC	2 cut(s)	640, 824
Hpy99I	CGWCG	2 cut(s)	305, 488
HpyAV	CCTTC	2 cut(s)	725, 846
HpyCH4III	ACNGT	2 cut(s)	569, 944
HpyCH4IV	ACGT	3 cut(s)	243, 486, 799
HpyCH4V	TGCA	5 cut(s)	526, 724, 749, 804, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 191, 323, 422, 571
HpyF3I	CTNAG	4 cut(s)	86, 163, 345, 575
HpySE526I	ACGT	3 cut(s)	243, 486, 799
Hsp92II	CATG	2 cut(s)	646, 1022
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	754, 789, 1021
LmnI	GCTCC	6 cut(s)	107, 199, 232, 509, 544, 908
Lsp1109I	GCAGC	4 cut(s)	510, 573, 753, 989
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	4 cut(s)	327, 413, 738, 818
MaeII	ACGT	3 cut(s)	243, 486, 799
MaeIII	GTNAC	2 cut(s)	762, 938
MalI	GATC	3 cut(s)	756, 791, 1023
MboI	GATC	3 cut(s)	754, 789, 1021
MboII	GAAGA	8 cut(s)	444, 470, 476, 545, 749, 797, 869, 1005
MhlI	GDGCHC	3 cut(s)	514, 567, 702
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	5 cut(s)	143, 474, 558, 768, 1008
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	39, 149
MmeI	TCCRAC	1 cut(s)	877
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	1 cut(s)	1007
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	980
MspI	CCGG	2 cut(s)	379, 674
MspR9I	CCNGG	3 cut(s)	269, 395, 507
MvaI	CCWGG	3 cut(s)	269, 395, 507
MwoI	GCNNNNNNNGC	5 cut(s)	108, 191, 323, 422, 571
NdeII	GATC	3 cut(s)	754, 789, 1021
NheI	GCTAGC	1 cut(s)	737
NlaIII	CATG	2 cut(s)	646, 1022
NlaIV	GGNNCC	2 cut(s)	280, 504
NmeAIII	GCCGAG	3 cut(s)	129, 255, 276
NmuCI	GTSAC	2 cut(s)	762, 938
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	701
PciI	ACATGT	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 459
PfeI	GAWTC	2 cut(s)	388, 930
PflMI	CCANNNNNTGG	1 cut(s)	114
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	6 cut(s)	342, 400, 525, 588, 743, 979
PleI	GAGTC	2 cut(s)	39, 149
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	2 cut(s)	39, 149
Ppu21I	YACGTR	1 cut(s)	244
PscI	ACATGT	1 cut(s)	642
Psp124BI	GAGCTC	1 cut(s)	514
Psp6I	CCWGG	3 cut(s)	267, 393, 505
PspCI	CACGTG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	923
PspGI	CCWGG	3 cut(s)	267, 393, 505
PspN4I	GGNNCC	2 cut(s)	280, 504
PspPI	GGNCC	3 cut(s)	90, 117, 862
PstI	CTGCAG	1 cut(s)	979
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	3 cut(s)	273, 350, 440
RsaNI	GTAC	3 cut(s)	272, 349, 439
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	1007
SatI	GCNGC	6 cut(s)	341, 399, 524, 587, 742, 978
Sau3AI	GATC	3 cut(s)	754, 789, 1021
Sau96I	GGNCC	3 cut(s)	90, 117, 862
SchI	GAGTC	2 cut(s)	39, 149
ScrFI	CCNGG	3 cut(s)	269, 395, 507
SduI	GDGCHC	3 cut(s)	514, 567, 702
SexAI	ACCWGGT	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	975
Sfr274I	CTCGAG	1 cut(s)	701
SfuI	TTCGAA	1 cut(s)	335
SlaI	CTCGAG	1 cut(s)	701
SmlI	CTYRAG	2 cut(s)	67, 701
SmoI	CTYRAG	2 cut(s)	67, 701
Sse9I	AATT	5 cut(s)	143, 474, 558, 768, 1008
SsiI	CCGC	8 cut(s)	51, 93, 105, 124, 183, 341, 399, 906
SspMI	CTAG	4 cut(s)	327, 413, 738, 818
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	3 cut(s)	267, 393, 505
TaaI	ACNGT	2 cut(s)	569, 944
TaiI	ACGT	3 cut(s)	246, 489, 802
TaqI	TCGA	4 cut(s)	258, 335, 647, 702
TasI	AATT	5 cut(s)	143, 474, 558, 768, 1008
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	343, 401
TfiI	GAWTC	2 cut(s)	388, 930
Tru1I	TTAA	1 cut(s)	1007
Tru9I	TTAA	1 cut(s)	1007
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	2 cut(s)	762, 938
TseI	GCWGC	4 cut(s)	523, 586, 741, 977
Tsp45I	GTSAC	2 cut(s)	762, 938
TspGWI	ACGGA	4 cut(s)	238, 483, 557, 857
TspRI	CASTG	1 cut(s)	786
Van91I	CCANNNNNTGG	1 cut(s)	114
XagI	CCTNNNNNAGG	2 cut(s)	833, 953
XceI	RCATGY	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	701
XspI	CTAG	4 cut(s)	327, 413, 738, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.