Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006681

Physical Location & Seq

Genomic Coordinates Forward (+)

7623270 .. 7627158

Gene Structure 3889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGAGACCTTGAAACACTTGGCCATTGGCTTCTACACCCCAAGACTCTCCGCCCCTTTCCCACACTCAAGAAAACCCCAAAAGCTCAGGCCCGCATTATGCTCCGCCAGCAAATGGGCCGACCGCCTCCTCGCCGACTTCCAATTCCTCGGCGACTCCTCCTCAGACCACCATTCCACCACCGCCACTCTCGCTCCTCCTCCCAATCTGCCTCCCCCACTCGCTCCTCCCGAGCGCCACGTGTCCATCCCCCTCGACTTCTACCAGGTACTCGGCACCCAGTCGCATTTCCTCGGCGACGGGATTAGGCGAGCTTACGAGGCTAGGGCTTCGAAGCCGCCTCAGTACGGCTTCACCCAAGACGCTTTGGTCAGCCGGAGACAGATTCTCCAGGCCGCCTGCGAAACCCTAGCCGATCCTACCTCCAGAAGAGAGTACAATCAGTCCCTCGTTGAAGATGAAGACGGAACAATTCTCACCGACGTTCCTTTTGATAAGGTTCCTGGAGCTCTTTGTGTGTTGCAAGAAGCTGGAAAGACGGAGCTGGTTCTTCAAATTGGGCAGAGTTTGCTGAGAGAGAGGCTGCCGAAATCGTTCAAGCAAGATGTGGTTTTGGTGATGGCACTTGCTTATGTTGACATGTCGAGGGACGCAATGGCATTGTCCCCACCGGATTTTATTCAGGGTTGTGAAGTGCTCGAGAGGGCTTTGAAGCTCTTGCAGGAGGAAGGTGCTAGCAGCCTTGCACCTGATCTTCAAGCACAAATTGACGAGACACTGGAAGAGATCACCCCACGTTGCATTTTGGAACTTCTAGGTTTACCCCTTGATGAGGAGTACCAATCAAGAAGGGAAGAGGGCCTCCGTGGTGTCCGAAACATATTGTGGTCTGTTGGAGGAGGCGGAGCAGTTGCTCTTGCTGGGGGATTCACCCGTGACAGTTTCCTGAACGAGGTCTTCTTACGAATGACTGCAGCTGAACAGGTGGAACTATACGTATCAACACCAAAAAACATCCCAGCCGAAAGCTTTGAAGTTTATGGAGTGGCACTTGCACTTGTTGCTCAAGCCTTTGTTGGTAAAAAACCTAATCACATTCAAGATGCTGATAACCTGTTCTGGGAACTTCAGCAGAATAAGGTATCAGCTGTAGGACACTCTGTTAACACCTATATAACCAATGAAAATAGTGAGATAGACTTTGCTTTGGAGAGGGGACTCTGTTCACTTCTTCTGGGGGATCTTGATGAGTGTCGTTCGTGGTTGGGCCTTGACAATAATAATTCACCATATAGAAATCCATCTGTAGTCGATTTTGTCTTGGAGAATGCTAAGGATGATGATGACAATGATCTTCCCGGACTTTGTAAGCTGTTGGAGACATGGTTGATGGAAGTGGTATTCCCCAGATTTAGAGACACCAAAGATATTGAGTTCAGCCTTGGTGATTATTATGATGATCCTACAGTCTTGAGATACTTAGAAAGGCTGGATGGAACTAATGGCTCACCCTTAGCTGCAGCAGCAGCCATAGTAAGGATCGGTGCTGAAGCTACTGCAGTTCTTGATAATGTCAAGACCAGTGCAATTCAGGCCCTGTGGAAGGTGTTTCCTCTGGGTCAAAGAGATAAGAATATGACACCTCAACAAGATCGTGAGATGAATTATTCTCTTCTTCCTGAAGACAGTGGAGACCCTTTGGAAGAATCCTATGAAGATGATTCTATTCGTGTTGCTGAGGTTTCTGGAAGAGATGGTTCTGTTGATACACTTAAAGAAGAATCAATTACTGAGCAAATCAAAGATGCAAGTGTGAAGATTATGTGTGCTGGTGTGGTAATTGGACTACTGACTTTTGTTGGATTGAAGTATTTACCCGGCAGGAATAGCTCATCCAATCTACGTAAAGAACTTAGTTCAGTGACTGCATCTGACGTCACTAGTTCAGGGTTACCAGTAGATGTTAAGTCTGCTGAGGAATTACCCAAAATGGACGCACAAGTTGCTGAAGGTCTAGTTCGGAAATGGCAGAACATAAAATCTCAGGCTTTTGGACCTGGGCATTCCGTGGATAAATTGTCAGAGGTATTGGATGGTGAGATGTTGAAGATATGGACAGATCGTGCAACTGAAATTGCACAGCTAAATTGGTCCTATGATTACACCCTTTTGAACTTAAACATTGACAGTGTAACAGTGTCGCTAGATGGGCAGCGTGCTGTGGTGGAAGCAACTCTTGAAGAATTAGCCCAATTGACTGATATGCTCCATCCAGAGCACGATGCCTCGAATAGCAGAACATACACTACAAGATATGAGATGTCTTGTTCAAGCTCAGGATGGAAAATAACTGAAGGAGCTGTCCTCCAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009657 GO:0009658 GO:0009706 GO:0009941 GO:0009987 GO:0010020 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031352 GO:0031353 GO:0031356 GO:0031357 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4101

Protein Analysis

791

Amino Acids

87.34

Weight (kDa)

4.66

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm_PDR	PF25515	161 - 302	5e-52	Plastid division regulator ARM repeat
ARC6	PF23468	322 - 516	4.2e-90	Plastid division regulator alpha solenoid domain
ARC6-like_IMS	PF13355	669 - 784	1.8e-33	ARC6-like, IMS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42480 AT5G42480
fragaria_vesca	FvH4_2g39070 FvH4_2g39070 FvH4_2g39070 FvH4_2g39070
malus_domestica	MD15G1016900.v1.1
prunus_persica	Prupe.1G370400_v2.0.a1
pyrus_communis	pycom15g01470 pycom15g01490 pycom15g01500
rosa_chinensis	RchiOBHm_Chr6g0302171
rosa_laevigata	RLG00000011189
rosa_multiflora	Rmu_sc0015826.1_g000001 Rmu_sc0025484.1_g000001 Rmu_sc0031609.1_g000001 Rmu_sc0041248.1_g000001 Rmu_ssc0000160.1_g000018
rosa_roxburghii	Rroxscaffold_7G00166020
rosa_rugosa	Rorug06G0312800 Rorug06G0312900
rosa_samantha	Rh6AG425400 Rh6BG477100 Rh6CG438200 Rh6DG425200
rosa_wichuraiana	Rw6G036840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AatII	GACGTC	1 cut(s)	1938
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	114
AciI	CCGC	8 cut(s)	51, 93, 105, 124, 183, 338, 396, 903
AclWI	GGATC	4 cut(s)	410, 1248, 1454, 1547
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	5 cut(s)	1112, 1569, 1701, 2028, 2373
AcvI	CACGTG	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	1935
AfaI	GTAC	4 cut(s)	270, 347, 437, 839
AfiI	CCNNNNNNNGG	7 cut(s)	114, 347, 832, 952, 1120, 1536, 1603
AflIII	ACRYGT	2 cut(s)	240, 639
AhlI	ACTAGT	1 cut(s)	1940
AjnI	CCWGG	4 cut(s)	264, 390, 502, 2056
Alw21I	GWGCWC	3 cut(s)	511, 699, 2280
Alw26I	GTCTC	5 cut(s)	373, 767, 1373, 1410, 1686
AlwI	GGATC	4 cut(s)	410, 1248, 1454, 1547
AlwNI	CAGNNNCTG	2 cut(s)	1597, 1925
Ama87I	CYCGRG	2 cut(s)	230, 698
AoxI	GGCC	7 cut(s)	21, 89, 117, 393, 859, 1267, 1593
ApeKI	GCWGC	8 cut(s)	583, 738, 974, 1517, 1520, 1523, 1526, 2212
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	7 cut(s)	90, 117, 859, 1267, 1594, 2054, 2151
AsuC2I	CCSGG	2 cut(s)	1359, 1878
AsuHPI	GGTGA	9 cut(s)	346, 469, 628, 781, 922, 1278, 1457, 1500, 2108
AsuII	TTCGAA	1 cut(s)	332
AsuNHI	GCTAGC	1 cut(s)	734
AvaI	CYCGRG	2 cut(s)	230, 698
AvaII	GGWCC	2 cut(s)	2054, 2151
BalI	TGGCCA	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	511
BbrPI	CACGTG	1 cut(s)	241
BbsI	GAAGAC	3 cut(s)	468, 949, 1689
Bbv12I	GWGCWC	3 cut(s)	511, 699, 2280
BbvCI	CCTCAGC	2 cut(s)	1737, 1974
BbvI	GCAGC	8 cut(s)	570, 750, 986, 1504, 1532, 1535, 1538, 2224
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	4 cut(s)	266, 392, 504, 2058
BcnI	CCSGG	2 cut(s)	1359, 1878
BcoDI	GTCTC	5 cut(s)	373, 767, 1373, 1410, 1686
BcuI	ACTAGT	1 cut(s)	1940
BfaI	CTAG	7 cut(s)	324, 410, 735, 815, 1941, 2015, 2204
BfmI	CTRYAG	6 cut(s)	972, 1149, 1305, 1464, 1518, 1557
BfoI	RGCGCY	1 cut(s)	238
Bme1390I	CCNGG	6 cut(s)	266, 392, 504, 1359, 1878, 2058
Bme18I	GGWCC	2 cut(s)	2054, 2151
BmeT110I	CYCGRG	2 cut(s)	230, 698
BmgT120I	GGNCC	7 cut(s)	90, 117, 859, 1267, 1594, 2054, 2151
BmiI	GGNNCC	2 cut(s)	277, 501
BmrFI	CCNGG	6 cut(s)	266, 392, 504, 1359, 1878, 2058
BmrI	ACTGGG	1 cut(s)	274
BmsI	GCATC	4 cut(s)	1093, 1795, 1937, 2272
BmtI	GCTAGC	1 cut(s)	738
BmuI	ACTGGG	1 cut(s)	274
BpiI	GAAGAC	3 cut(s)	468, 949, 1689
BplI	GAGNNNNNCTC	1 cut(s)	2349
BpmI	CTGGAG	3 cut(s)	374, 409, 525
Bpu10I	CCTNAGC	6 cut(s)	86, 1332, 1513, 1737, 1974, 2335
Bpu14I	TTCGAA	1 cut(s)	332
BpuEI	CTTGAG	3 cut(s)	52, 1050, 1492
BpuMI	CCSGG	2 cut(s)	1359, 1878
BsaAI	YACGTR	3 cut(s)	241, 997, 1904
BsaHI	GRCGYC	1 cut(s)	1935
BsaI	GGTCTC	1 cut(s)	1686
BsaJI	CCNNGG	6 cut(s)	148, 292, 865, 1441, 2057, 2067
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	6 cut(s)	178, 208, 372, 402, 1370, 1400
Bsc4I	CCNNNNNNNGG	7 cut(s)	114, 347, 832, 952, 1120, 1536, 1603
Bse1I	ACTGG	4 cut(s)	280, 783, 1581, 1955
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	4 cut(s)	266, 392, 504, 2058
BseDI	CCNNGG	6 cut(s)	148, 292, 865, 1441, 2057, 2067
BseGI	GGATG	8 cut(s)	246, 1014, 1342, 1498, 1892, 2098, 2269, 2345
BseLI	CCNNNNNNNGG	7 cut(s)	114, 347, 832, 952, 1120, 1536, 1603
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	9 cut(s)	100, 177, 356, 563, 1728, 1782, 1965, 2057, 2349
BseNI	ACTGG	4 cut(s)	280, 783, 1581, 1955
BseRI	GAGGAG	8 cut(s)	119, 148, 151, 186, 189, 216, 848, 912
BseXI	GCAGC	8 cut(s)	570, 750, 986, 1504, 1532, 1535, 1538, 2224
BseYI	CCCAGC	2 cut(s)	920, 1018
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	7 cut(s)	23, 91, 119, 395, 861, 1269, 1595
BshNI	GGYRCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	511, 699, 2280
BsiHKCI	CYCGRG	2 cut(s)	230, 698
BsiSI	CCGG	4 cut(s)	376, 671, 1359, 1878
BslFI	GGGAC	4 cut(s)	430, 649, 662, 1230
BslI	CCNNNNNNNGG	7 cut(s)	114, 347, 832, 952, 1120, 1536, 1603
BsmAI	GTCTC	5 cut(s)	373, 767, 1373, 1410, 1686
BsmFI	GGGAC	4 cut(s)	430, 649, 662, 1230
BsmI	GAATGC	2 cut(s)	1333, 2062
BsnI	GGCC	7 cut(s)	23, 91, 119, 395, 861, 1269, 1595
Bso31I	GGTCTC	1 cut(s)	1686
BsoBI	CYCGRG	2 cut(s)	230, 698
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	511, 699, 2280
Bsp143I	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
BspACI	CCGC	8 cut(s)	51, 93, 105, 124, 183, 338, 396, 903
BspANI	GGCC	7 cut(s)	23, 91, 119, 395, 861, 1269, 1595
BspCNI	CTCAG	9 cut(s)	99, 176, 355, 564, 1729, 1783, 1966, 2056, 2348
BspHI	TCATGA	1 cut(s)	2372
BspLI	GGNNCC	2 cut(s)	277, 501
BspMAI	CTGCAG	3 cut(s)	976, 1522, 1561
BspOI	GCTAGC	1 cut(s)	738
BspPI	GGATC	4 cut(s)	410, 1248, 1454, 1547
BspT104I	TTCGAA	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	1686
BsrDI	GCAATG	1 cut(s)	660
BsrI	ACTGG	4 cut(s)	280, 783, 1581, 1955
BssECI	CCNNGG	6 cut(s)	148, 292, 865, 1441, 2057, 2067
BssMI	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
BssNI	GRCGYC	1 cut(s)	1935
BssT1I	CCWWGG	1 cut(s)	1441
Bst2UI	CCWGG	4 cut(s)	266, 392, 504, 2058
Bst4CI	ACNGT	5 cut(s)	941, 1468, 1688, 2189, 2197
Bst6I	CTCTTC	5 cut(s)	424, 777, 849, 1677, 1744
BstACI	GRCGYC	1 cut(s)	1935
BstAPI	GCANNNNNTGC	3 cut(s)	568, 1061, 2003
BstBAI	YACGTR	3 cut(s)	241, 997, 1904
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	6 cut(s)	93, 109, 312, 400, 736, 2217
BstDSI	CCRYGG	2 cut(s)	865, 2067
BstEII	GGTNACC	1 cut(s)	1950
BstENI	CCTNNNNNAGG	3 cut(s)	830, 950, 1601
BstF5I	GGATG	8 cut(s)	246, 1014, 1342, 1498, 1892, 2098, 2269, 2345
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	9 cut(s)	418, 754, 789, 1243, 1354, 1462, 1542, 1654, 2122
BstMAI	GTCTC	5 cut(s)	373, 767, 1373, 1410, 1686
BstMBI	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
BstMCI	CGRYCG	1 cut(s)	124
BstNI	CCWGG	4 cut(s)	266, 392, 504, 2058
BstNSI	RCATGY	1 cut(s)	643
BstPI	GGTNACC	1 cut(s)	1950
BstSCI	CCNGG	6 cut(s)	264, 390, 502, 1357, 1876, 2056
BstSFI	CTRYAG	6 cut(s)	972, 1149, 1305, 1464, 1518, 1557
BstSNI	TACGTA	2 cut(s)	997, 1904
BstV1I	GCAGC	8 cut(s)	570, 750, 986, 1504, 1532, 1535, 1538, 2224
BstV2I	GAAGAC	3 cut(s)	468, 949, 1689
BstX2I	RGATCY	1 cut(s)	1240
BstYI	RGATCY	1 cut(s)	1240
BsuRI	GGCC	7 cut(s)	23, 91, 119, 395, 861, 1269, 1595
BtgI	CCRYGG	2 cut(s)	865, 2067
BtsCI	GGATG	8 cut(s)	246, 1014, 1342, 1498, 1892, 2098, 2269, 2345
BtsIMutI	CAGTG	6 cut(s)	776, 1588, 1693, 1926, 2194, 2202
Cac8I	GCNNGC	6 cut(s)	93, 109, 312, 400, 736, 2217
CaiI	CAGNNNCTG	2 cut(s)	1597, 1925
CciI	TCATGA	1 cut(s)	2372
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	7 cut(s)	90, 117, 859, 1267, 1594, 2054, 2151
CseI	GACGC	3 cut(s)	371, 659, 2003
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	4 cut(s)	269, 346, 436, 838
CviAII	CATG	3 cut(s)	640, 1383, 2373
CviQI	GTAC	4 cut(s)	269, 346, 436, 838
DpnI	GATC	9 cut(s)	417, 753, 788, 1242, 1353, 1461, 1541, 1653, 2121
DpnII	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	5 cut(s)	424, 777, 849, 1677, 1744
EarI	CTCTTC	5 cut(s)	424, 777, 849, 1677, 1744
EciI	GGCGGA	3 cut(s)	40, 94, 918
Ecl136II	GAGCTC	1 cut(s)	509
Eco105I	TACGTA	2 cut(s)	997, 1904
Eco130I	CCWWGG	1 cut(s)	1441
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	1686
Eco47I	GGWCC	2 cut(s)	2054, 2151
Eco53kI	GAGCTC	1 cut(s)	509
Eco57I	CTGAAG	5 cut(s)	1112, 1569, 1701, 2028, 2373
Eco72I	CACGTG	1 cut(s)	241
Eco88I	CYCGRG	2 cut(s)	230, 698
Eco91I	GGTNACC	1 cut(s)	1950
EcoICRI	GAGCTC	1 cut(s)	509
EcoNI	CCTNNNNNAGG	3 cut(s)	830, 950, 1601
EcoO109I	RGGNCCY	2 cut(s)	859, 1594
EcoO65I	GGTNACC	1 cut(s)	1950
EcoRII	CCWGG	4 cut(s)	264, 390, 502, 2056
EcoT14I	CCWWGG	1 cut(s)	1441
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	1441
FaeI	CATG	3 cut(s)	643, 1386, 2376
FalI	AAGNNNNNCTT	2 cut(s)	2220, 2252
FaqI	GGGAC	4 cut(s)	430, 649, 662, 1230
FatI	CATG	3 cut(s)	639, 1382, 2372
FauI	CCCGC	1 cut(s)	100
FokI	GGATG	8 cut(s)	233, 1001, 1349, 1505, 1879, 2105, 2256, 2352
FriOI	GRGCYC	1 cut(s)	511
FspBI	CTAG	7 cut(s)	324, 410, 735, 815, 1941, 2015, 2204
GlaI	GCGC	1 cut(s)	236
GsaI	CCCAGC	2 cut(s)	924, 1022
GsuI	CTGGAG	3 cut(s)	374, 409, 525
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	7 cut(s)	23, 91, 119, 395, 861, 1269, 1595
HapII	CCGG	4 cut(s)	376, 671, 1359, 1878
HgaI	GACGC	3 cut(s)	371, 659, 2003
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	1935
Hin1II	CATG	3 cut(s)	643, 1386, 2376
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	2 cut(s)	637, 1165
HindII	GTYRAC	2 cut(s)	637, 1165
HindIII	AAGCTT	1 cut(s)	1027
HinfI	GANTC	8 cut(s)	45, 155, 385, 927, 1218, 1706, 1721, 1781
HpaI	GTTAAC	1 cut(s)	1165
HpaII	CCGG	4 cut(s)	376, 671, 1359, 1878
HphI	GGTGA	9 cut(s)	346, 469, 628, 781, 922, 1278, 1457, 1500, 2108
Hpy166II	GTNNAC	4 cut(s)	637, 821, 1165, 1226
Hpy188I	TCNGA	5 cut(s)	166, 875, 1933, 2022, 2083
Hpy8I	GTNNAC	4 cut(s)	637, 821, 1165, 1226
Hpy99I	CGWCG	2 cut(s)	302, 485
HpyAV	CCTTC	5 cut(s)	722, 843, 1597, 2003, 2348
HpyCH4III	ACNGT	5 cut(s)	941, 1468, 1688, 2189, 2197
HpyCH4IV	ACGT	6 cut(s)	240, 483, 796, 996, 1903, 1935
HpySE526I	ACGT	6 cut(s)	240, 483, 796, 996, 1903, 1935
Hsp92I	GRCGYC	1 cut(s)	1935
Hsp92II	CATG	3 cut(s)	643, 1386, 2376
HspAI	GCGC	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	1165
Kzo9I	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
LmnI	GCTCC	8 cut(s)	107, 199, 229, 506, 541, 905, 2271, 2357
Lsp1109I	GCAGC	8 cut(s)	570, 750, 986, 1504, 1532, 1535, 1538, 2224
LweI	GCATC	4 cut(s)	1093, 1795, 1937, 2272
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	7 cut(s)	324, 410, 735, 815, 1941, 2015, 2204
MaeII	ACGT	6 cut(s)	240, 483, 796, 996, 1903, 1935
MaeIII	GTNAC	5 cut(s)	935, 1921, 1936, 1950, 2191
MalI	GATC	9 cut(s)	417, 753, 788, 1242, 1353, 1461, 1541, 1653, 2121
MboI	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
MfeI	CAATTG	1 cut(s)	2252
MflI	RGATCY	1 cut(s)	1240
MhlI	GDGCHC	3 cut(s)	511, 699, 2280
MlsI	TGGCCA	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	3 cut(s)	39, 149, 1212
MmeI	TCCRAC	3 cut(s)	874, 1356, 1840
Mox20I	TGGCCA	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	4 cut(s)	1164, 1773, 1965, 2177
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	2 cut(s)	977, 1148
MspI	CCGG	4 cut(s)	376, 671, 1359, 1878
MspR9I	CCNGG	6 cut(s)	266, 392, 504, 1359, 1878, 2058
MunI	CAATTG	1 cut(s)	2252
Mva1269I	GAATGC	2 cut(s)	1333, 2062
MvaI	CCWGG	4 cut(s)	266, 392, 504, 2058
NciI	CCSGG	2 cut(s)	1359, 1878
NdeII	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
NheI	GCTAGC	1 cut(s)	734
NlaIII	CATG	3 cut(s)	643, 1386, 2376
NlaIV	GGNNCC	2 cut(s)	277, 501
NmeAIII	GCCGAG	3 cut(s)	129, 252, 273
NmuCI	GTSAC	3 cut(s)	935, 1921, 1936
NspI	RCATGY	1 cut(s)	643
NspV	TTCGAA	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	698
PagI	TCATGA	1 cut(s)	2372
PciI	ACATGT	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	2 cut(s)	1333, 2062
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	5 cut(s)	385, 927, 1706, 1721, 1781
PflMI	CCANNNNNTGG	1 cut(s)	114
PfoI	TCCNGGA	2 cut(s)	502, 1357
PleI	GAGTC	3 cut(s)	39, 149, 1212
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	3 cut(s)	39, 149, 1212
Ppu21I	YACGTR	3 cut(s)	241, 997, 1904
PscI	ACATGT	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	4 cut(s)	264, 390, 502, 2056
PspCI	CACGTG	1 cut(s)	241
PspEI	GGTNACC	1 cut(s)	1950
PspFI	CCCAGC	2 cut(s)	920, 1018
PspGI	CCWGG	4 cut(s)	264, 390, 502, 2056
PspN4I	GGNNCC	2 cut(s)	277, 501
PspPI	GGNCC	7 cut(s)	90, 117, 859, 1267, 1594, 2054, 2151
PsrI	GAACNNNNNNTAC	2 cut(s)	2290, 2322
PstI	CTGCAG	3 cut(s)	976, 1522, 1561
PstNI	CAGNNNCTG	2 cut(s)	1597, 1925
PsuI	RGATCY	1 cut(s)	1240
PvuII	CAGCTG	2 cut(s)	977, 1148
RsaI	GTAC	4 cut(s)	270, 347, 437, 839
RsaNI	GTAC	4 cut(s)	269, 346, 436, 838
SacI	GAGCTC	1 cut(s)	511
SaqAI	TTAA	4 cut(s)	1164, 1773, 1965, 2177
Sau3AI	GATC	9 cut(s)	415, 751, 786, 1240, 1351, 1459, 1539, 1651, 2119
Sau96I	GGNCC	7 cut(s)	90, 117, 859, 1267, 1594, 2054, 2151
SchI	GAGTC	3 cut(s)	39, 149, 1212
ScrFI	CCNGG	6 cut(s)	266, 392, 504, 1359, 1878, 2058
SduI	GDGCHC	3 cut(s)	511, 699, 2280
SexAI	ACCWGGT	1 cut(s)	264
SfaNI	GCATC	4 cut(s)	1093, 1795, 1937, 2272
SfcI	CTRYAG	6 cut(s)	972, 1149, 1305, 1464, 1518, 1557
Sfr274I	CTCGAG	1 cut(s)	698
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	2 cut(s)	2054, 2151
SlaI	CTCGAG	1 cut(s)	698
SmlI	CTYRAG	4 cut(s)	67, 698, 1065, 1471
SmoI	CTYRAG	4 cut(s)	67, 698, 1065, 1471
SnaBI	TACGTA	2 cut(s)	997, 1904
SpeI	ACTAGT	1 cut(s)	1940
SsiI	CCGC	8 cut(s)	51, 93, 105, 124, 183, 338, 396, 903
SspMI	CTAG	7 cut(s)	324, 410, 735, 815, 1941, 2015, 2204
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	6 cut(s)	264, 390, 502, 1357, 1876, 2056
StyI	CCWWGG	1 cut(s)	1441
TaaI	ACNGT	5 cut(s)	941, 1468, 1688, 2189, 2197
TaiI	ACGT	6 cut(s)	243, 486, 799, 999, 1906, 1938
TaqI	TCGA	6 cut(s)	255, 332, 644, 699, 1311, 2288
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	2 cut(s)	340, 398
TfiI	GAWTC	5 cut(s)	385, 927, 1706, 1721, 1781
Tru1I	TTAA	4 cut(s)	1164, 1773, 1965, 2177
Tru9I	TTAA	4 cut(s)	1164, 1773, 1965, 2177
TscAI	CASTG	6 cut(s)	783, 1588, 1693, 1926, 2194, 2202
TseFI	GTSAC	3 cut(s)	935, 1921, 1936
TseI	GCWGC	8 cut(s)	583, 738, 974, 1517, 1520, 1523, 1526, 2212
Tsp45I	GTSAC	3 cut(s)	935, 1921, 1936
TspDTI	ATGAA	4 cut(s)	474, 1197, 1676, 1728
TspGWI	ACGGA	4 cut(s)	480, 554, 854, 2056
TspRI	CASTG	6 cut(s)	783, 1588, 1693, 1926, 2194, 2202
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	2 cut(s)	2054, 2151
XagI	CCTNNNNNAGG	3 cut(s)	830, 950, 1601
XceI	RCATGY	1 cut(s)	643
XhoI	CTCGAG	1 cut(s)	698
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	7 cut(s)	324, 410, 735, 815, 1941, 2015, 2204
ZraI	GACGTC	1 cut(s)	1936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.