pycom15g01760

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008721
Physical Location & Seq
Forward (+)
1013739 .. 1015525
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1698 bp
ATGCTTATCCACGAGACAAATCTCGAAATTCAAATTCATTTAACGATGCTCTCCTTATACATAAACTTGTTGGACAAGGTATGTTTCCACGTGGCGCAATTTGACTGGCGCAATGACAATATTGTAGAAGGGGAAGTATCCATTGCAATTTGCAATGCGCGCGGGATCCACTTCCAACGGACACAACAACTCTGCAATCTTCTATCCACGCTTTTCACCTCATCTTCCAGACATGAACTGAAACAAATAGCGGAGAATTTTACAATCCCCTGCAAATCAAGCTCTCCAATACCCATGGTACCCTCCAAATTCAGCAACCCATCTAAATTCTTGCCACGACAAACCAAACCCACAATGTCCTTTTCCAGACAAACCCTCCCGAAATTCACAGACTCTCACTTGAATTACCTCCGCAAGAATGGCGAGTTCACGGAGGCCGTCACCGTTCTTGACTCCATTGCCAAAAGTGGGTCGAAGGTAACTTCCACTACTTACATGAATTTACTTCAATCCTGCATTGACACCAATTCTATTCAACTGGGTCGGAAGATCGATGAGCGTATTGATGTAGTTGAGGAATTGAACCCGTTTGTTGAGACGAAGTTGGTGAGCATGTATGCGAAATGCGGGTTTTTGGATGATGCGCGCAAGGTGTTCTACGCAATGCGTGAGAGAAATTTGTACTCTTGGTCGGCCATGATCGGTGCGTGTCTTAGAGATCAGAGGTGGAAAGAGGTGGTGGAGCTTTTTTACTCGATGATGAGAGATGGGGTTTTGCCGGATTACTTTCTGTTCCCTAAGATATTGCAGGCTTGTGGGAATTGTAGCAATTTCGAGGCCACGAAATTGATACACTCCATTGTGGTTCGGTGTAATTTGGCTAGTTTTATTCATGTGAACAATTCGATACTGGCGGTGTACGCAAAGTGTGGAAAATTAAAGAGGGCAAGGAGGTTCTTTGACAACATGGATGAGAGGGATGGGGTGAGTTGGAATGCAGTTATATCTGGTTACTGTCACAAGGGTGAGACTGAAGAGGCTCGGAGACTGTTTGATGCGATGAGCAAGGAAGGGATTGAACCAGGGTTGGTAACTTGGAATACATTGATTGCTAGTCATAACCAGTTAGGGCATTGTGATGTCGCAATGGAACTGATGAGGAGGATGGAGAGCTGTGGCATAACTCCTGATGTATATACTTGGACTTCTTTGATTTCGGGATTTGCTCAAAACGACAGGAAAAATCAGTCTTTGGATTTGTTCAAGAAGATGCTTCTGGCAGGGGTACAACCAAATGGGATTACAATCACTAGTGCAATCTCAGCATGCACATCTTTAAAATTACTCAACAAAGGGTTGGAAATCTATTCTATTGCTATAAAGATGGGTTTCATTGATGACGTACTGGTTGGAAATGCACTTGTTGATATGTTTTCAAAATGTGGGGAACTGGAAGCTGCTCAGAATGTCTTTGTTATGATCGAGAAAGATGTCTATACCTGGAACTCAATGATAGGAGGATATTGCCAAGCTAGATACTGTGGTAAGGCCTATGAACTGCTCGTGAAGATGCAGGAATCAGATGTGCATCCCAATGCTGTGACCTGGAATGTGATCGATCACAGGATACATGCAGAATGGAGATGCGGATCAAGCAATGGACCTCTTCCAAAGGATGGAAAAAGATGGGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

566

Amino Acids

64.06

Weight (kDa)

8.0

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 327 - 365 2.2e-10 PPR repeat family
PPR_1 PF12854 327 - 354 4e-06 PPR repeat
PPR_3 PF13812 327 - 370 5.7e-06 Pentatricopeptide repeat domain
PPR PF01535 329 - 359 5.2e-09 PPR repeat
PPR_2 PF13041 361 - 409 3.9e-12 PPR repeat family
PPR_3 PF13812 385 - 443 2.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 400 - 443 3.5e-07 PPR repeat family
PPR_1 PF12854 494 - 524 1.9e-06 PPR repeat
PPR_2 PF13041 496 - 539 1.9e-10 PPR repeat family
PPR PF01535 499 - 528 2.5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 1676
AccII CGCG 3 cut(s) 160, 162, 646
AciI CCGC 6 cut(s) 162, 251, 412, 627, 914, 1647
AclWI GGATC 3 cut(s) 160, 173, 1657
AcoI YGGCCR 1 cut(s) 693
AcsI RAATTY 8 cut(s) 27, 33, 256, 308, 326, 383, 499, 676
AcuI CTGAAG 1 cut(s) 1053
AcvI CACGTG 1 cut(s) 91
AfaI GTAC 5 cut(s) 300, 683, 920, 1287, 1404
AfiI CCNNNNNNNGG 2 cut(s) 468, 1676
AgsI TTSAA 8 cut(s) 32, 403, 509, 536, 583, 1079, 1264, 1437
AhlI ACTAGT 1 cut(s) 1310
AjnI CCWGG 3 cut(s) 1081, 1499, 1604
AleI CACNNNNGTG 1 cut(s) 1023
AluBI AGCT 5 cut(s) 282, 745, 1173, 1457, 1532
AluI AGCT 5 cut(s) 282, 745, 1173, 1457, 1532
Alw26I GTCTC 4 cut(s) 8, 590, 1022, 1039
AlwI GGATC 3 cut(s) 160, 173, 1657
AoxI GGCC 4 cut(s) 435, 693, 837, 1548
ApeKI GCWGC 1 cut(s) 1457
ApoI RAATTY 8 cut(s) 27, 33, 256, 308, 326, 383, 499, 676
Asp718I GGTACC 1 cut(s) 298
AspLEI GCGC 6 cut(s) 97, 111, 160, 162, 646, 648
AspS9I GGNCC 1 cut(s) 1661
AsuHPI GGTGA 5 cut(s) 208, 433, 619, 997, 1037
AvaII GGWCC 1 cut(s) 1661
BaeI ACNNNNGTAYC 2 cut(s) 1528, 1561
BamHI GGATCC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 298
BauI CACGAG 2 cut(s) 11, 1562
BbrPI CACGTG 1 cut(s) 91
BbvI GCAGC 1 cut(s) 1444
BccI CCATC 7 cut(s) 328, 761, 974, 1159, 1378, 1670, 1680
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 3 cut(s) 1083, 1501, 1606
BciVI GTATCC 2 cut(s) 148, 1620
BcoDI GTCTC 4 cut(s) 8, 590, 1022, 1039
BcuI ACTAGT 1 cut(s) 1310
BfaI CTAG 4 cut(s) 882, 1113, 1311, 1533
BfuI GTATCC 2 cut(s) 148, 1620
BisI GCNGC 1 cut(s) 1458
BlsI GCNGC 1 cut(s) 1459
Bme1390I CCNGG 3 cut(s) 1083, 1501, 1606
Bme18I GGWCC 1 cut(s) 1661
BmgT120I GGNCC 1 cut(s) 1661
BmiI GGNNCC 2 cut(s) 167, 300
BmrFI CCNGG 3 cut(s) 1083, 1501, 1606
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 7 cut(s) 36, 631, 1045, 1260, 1560, 1597, 1634
BmuI ACTGGG 1 cut(s) 548
Bsa29I ATCGAT 2 cut(s) 552, 1617
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 3 cut(s) 1304, 1587, 1648
BsaJI CCNNGG 2 cut(s) 294, 1082
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 1676
Bse1I ACTGG 6 cut(s) 110, 543, 915, 1123, 1410, 1455
Bse3DI GCAATG 7 cut(s) 118, 141, 160, 456, 669, 1152, 1663
Bse8I GATNNNNATC 3 cut(s) 1304, 1587, 1648
BseBI CCWGG 3 cut(s) 1083, 1501, 1606
BseCI ATCGAT 2 cut(s) 552, 1617
BseDI CCNNGG 2 cut(s) 294, 1082
BseGI GGATG 6 cut(s) 643, 976, 985, 1170, 1588, 1681
BseJI GATNNNNATC 3 cut(s) 1304, 1587, 1648
BseLI CCNNNNNNNGG 2 cut(s) 468, 1676
BseMI GCAATG 7 cut(s) 118, 141, 160, 456, 669, 1152, 1663
BseMII CTCAG 2 cut(s) 1335, 1475
BseNI ACTGG 6 cut(s) 110, 543, 915, 1123, 1410, 1455
BsePI GCGCGC 2 cut(s) 158, 644
BseRI GAGGAG 1 cut(s) 1174
BseXI GCAGC 1 cut(s) 1444
Bsh1236I CGCG 3 cut(s) 160, 162, 646
BshFI GGCC 4 cut(s) 437, 695, 839, 1550
BshNI GGYRCC 1 cut(s) 298
BshVI ATCGAT 2 cut(s) 552, 1617
BsiSI CCGG 1 cut(s) 779
BslI CCNNNNNNNGG 2 cut(s) 468, 1676
BsmAI GTCTC 4 cut(s) 8, 590, 1022, 1039
BsmBI CGTCTC 1 cut(s) 590
BsmI GAATGC 1 cut(s) 1000
BsnI GGCC 4 cut(s) 437, 695, 839, 1550
Bsp143I GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 6 cut(s) 162, 251, 412, 627, 914, 1647
BspANI GGCC 4 cut(s) 437, 695, 839, 1550
BspCNI CTCAG 2 cut(s) 1334, 1474
BspDI ATCGAT 2 cut(s) 552, 1617
BspFNI CGCG 3 cut(s) 160, 162, 646
BspLI GGNNCC 2 cut(s) 167, 300
BspPI GGATC 3 cut(s) 160, 173, 1657
BspT107I GGYRCC 1 cut(s) 298
BsrDI GCAATG 7 cut(s) 118, 141, 160, 456, 669, 1152, 1663
BsrI ACTGG 6 cut(s) 110, 543, 915, 1123, 1410, 1455
BssECI CCNNGG 2 cut(s) 294, 1082
BssHII GCGCGC 2 cut(s) 158, 644
BssMI GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
BssSI CACGAG 2 cut(s) 11, 1562
BssT1I CCWWGG 1 cut(s) 294
Bst2BI CACGAG 2 cut(s) 11, 1562
Bst2UI CCWGG 3 cut(s) 1083, 1501, 1606
Bst4CI ACNGT 4 cut(s) 445, 1016, 1050, 1541
Bst6I CTCTTC 2 cut(s) 1029, 1671
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 4 cut(s) 160, 646, 810, 1327
BstDEI CTNAG 4 cut(s) 713, 798, 1321, 1461
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 6 cut(s) 643, 976, 985, 1170, 1588, 1681
BstFNI CGCG 3 cut(s) 160, 162, 646
BstHHI GCGC 6 cut(s) 97, 111, 160, 162, 646, 648
BstKTI GATC 8 cut(s) 168, 552, 702, 721, 1482, 1617, 1621, 1652
BstMAI GTCTC 4 cut(s) 8, 590, 1022, 1039
BstMBI GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
BstMWI GCNNNNNNNGC 6 cut(s) 159, 279, 420, 920, 1322, 1653
BstNI CCWGG 3 cut(s) 1083, 1501, 1606
BstNSI RCATGY 3 cut(s) 616, 1329, 1634
BstSCI CCNGG 3 cut(s) 1081, 1499, 1604
BstUI CGCG 3 cut(s) 160, 162, 646
BstV1I GCAGC 1 cut(s) 1444
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
Bsu15I ATCGAT 2 cut(s) 552, 1617
BsuI GTATCC 2 cut(s) 148, 1620
BsuRI GGCC 4 cut(s) 437, 695, 839, 1550
BsuTUI ATCGAT 2 cut(s) 552, 1617
BtgI CCRYGG 1 cut(s) 294
BtgZI GCGATG 1 cut(s) 1073
BtsCI GGATG 6 cut(s) 643, 976, 985, 1170, 1588, 1681
Cac8I GCNNGC 4 cut(s) 160, 646, 810, 1327
CfoI GCGC 6 cut(s) 97, 111, 160, 162, 646, 648
Cfr13I GGNCC 1 cut(s) 1661
ClaI ATCGAT 2 cut(s) 552, 1617
Csp6I GTAC 5 cut(s) 299, 682, 919, 1286, 1403
CviAII CATG 9 cut(s) 233, 295, 496, 613, 697, 893, 967, 1326, 1631
CviQI GTAC 5 cut(s) 299, 682, 919, 1286, 1403
DdeI CTNAG 4 cut(s) 713, 798, 1321, 1461
DpnI GATC 8 cut(s) 167, 551, 701, 720, 1481, 1616, 1620, 1651
DpnII GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
DraI TTTAAA 1 cut(s) 1338
EaeI YGGCCR 1 cut(s) 693
Eam1104I CTCTTC 2 cut(s) 1029, 1671
EarI CTCTTC 2 cut(s) 1029, 1671
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 1550
Eco47I GGWCC 1 cut(s) 1661
Eco57I CTGAAG 1 cut(s) 1053
Eco72I CACGTG 1 cut(s) 91
EcoRII CCWGG 3 cut(s) 1081, 1499, 1604
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 9 cut(s) 236, 298, 499, 616, 700, 896, 970, 1329, 1634
FatI CATG 9 cut(s) 232, 294, 495, 612, 696, 892, 966, 1325, 1630
FauI CCCGC 2 cut(s) 155, 620
Fnu4HI GCNGC 1 cut(s) 1458
FokI GGATG 6 cut(s) 650, 983, 992, 1177, 1575, 1688
Fsp4HI GCNGC 1 cut(s) 1458
FspBI CTAG 4 cut(s) 882, 1113, 1311, 1533
GlaI GCGC 6 cut(s) 96, 110, 159, 161, 645, 647
GluI GCNGC 1 cut(s) 1458
HaeIII GGCC 4 cut(s) 437, 695, 839, 1550
HapII CCGG 1 cut(s) 779
HhaI GCGC 6 cut(s) 97, 111, 160, 162, 646, 648
Hin1II CATG 9 cut(s) 236, 298, 499, 616, 700, 896, 970, 1329, 1634
Hin6I GCGC 6 cut(s) 95, 109, 158, 160, 644, 646
HinP1I GCGC 6 cut(s) 95, 109, 158, 160, 644, 646
HinfI GANTC 3 cut(s) 392, 452, 1577
HpaII CCGG 1 cut(s) 779
HphI GGTGA 5 cut(s) 208, 433, 619, 997, 1037
Hpy166II GTNNAC 3 cut(s) 429, 898, 919
Hpy188I TCNGA 5 cut(s) 546, 723, 1044, 1464, 1582
Hpy8I GTNNAC 3 cut(s) 429, 898, 919
HpyAV CCTTC 3 cut(s) 122, 469, 1064
HpyCH4III ACNGT 4 cut(s) 445, 1016, 1050, 1541
HpyCH4IV ACGT 2 cut(s) 90, 1401
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 279, 420, 920, 1322, 1653
HpyF3I CTNAG 4 cut(s) 713, 798, 1321, 1461
HpySE526I ACGT 2 cut(s) 90, 1401
Hsp92II CATG 9 cut(s) 236, 298, 499, 616, 700, 896, 970, 1329, 1634
HspAI GCGC 6 cut(s) 95, 109, 158, 160, 644, 646
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
LmnI GCTCC 1 cut(s) 742
Lsp1109I GCAGC 1 cut(s) 1444
LweI GCATC 7 cut(s) 36, 631, 1045, 1260, 1560, 1597, 1634
MaeI CTAG 4 cut(s) 882, 1113, 1311, 1533
MaeII ACGT 2 cut(s) 90, 1401
MaeIII GTNAC 6 cut(s) 439, 478, 1010, 1016, 1090, 1600
MalI GATC 8 cut(s) 167, 551, 701, 720, 1481, 1616, 1620, 1651
MboI GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
MboII GAAGA 7 cut(s) 191, 216, 559, 1046, 1279, 1579, 1658
MflI RGATCY 1 cut(s) 165
MlyI GAGTC 2 cut(s) 386, 446
MmeI TCCRAC 6 cut(s) 51, 199, 524, 971, 1338, 1390
MseI TTAA 4 cut(s) 41, 938, 1337, 1696
MslI CAYNNNNRTG 3 cut(s) 1023, 1137, 1593
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 3 cut(s) 1083, 1501, 1606
Mva1269I GAATGC 1 cut(s) 1000
MvaI CCWGG 3 cut(s) 1083, 1501, 1606
MvnI CGCG 3 cut(s) 160, 162, 646
MwoI GCNNNNNNNGC 6 cut(s) 159, 279, 420, 920, 1322, 1653
NcoI CCATGG 1 cut(s) 294
NdeII GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
NlaIII CATG 9 cut(s) 236, 298, 499, 616, 700, 896, 970, 1329, 1634
NlaIV GGNNCC 2 cut(s) 167, 300
NmuCI GTSAC 3 cut(s) 439, 1016, 1600
NspI RCATGY 3 cut(s) 616, 1329, 1634
OliI CACNNNNGTG 1 cut(s) 1023
PaeI GCATGC 1 cut(s) 1329
PauI GCGCGC 2 cut(s) 158, 644
PceI AGGCCT 1 cut(s) 1550
PctI GAATGC 1 cut(s) 1000
PfeI GAWTC 1 cut(s) 1577
PflMI CCANNNNNTGG 1 cut(s) 1676
PkrI GCNGC 1 cut(s) 1459
PleI GAGTC 2 cut(s) 386, 446
PmaCI CACGTG 1 cut(s) 91
PmlI CACGTG 1 cut(s) 91
PpsI GAGTC 2 cut(s) 386, 446
Ppu21I YACGTR 1 cut(s) 91
Psp6I CCWGG 3 cut(s) 1081, 1499, 1604
PspCI CACGTG 1 cut(s) 91
PspGI CCWGG 3 cut(s) 1081, 1499, 1604
PspN4I GGNNCC 2 cut(s) 167, 300
PspPI GGNCC 1 cut(s) 1661
PsuI RGATCY 1 cut(s) 165
PteI GCGCGC 2 cut(s) 158, 644
RsaI GTAC 5 cut(s) 300, 683, 920, 1287, 1404
RsaNI GTAC 5 cut(s) 299, 682, 919, 1286, 1403
RseI CAYNNNNRTG 3 cut(s) 1023, 1137, 1593
SaqAI TTAA 4 cut(s) 41, 938, 1337, 1696
SatI GCNGC 1 cut(s) 1458
Sau3AI GATC 8 cut(s) 165, 549, 699, 718, 1479, 1614, 1618, 1649
Sau96I GGNCC 1 cut(s) 1661
SchI GAGTC 2 cut(s) 386, 446
ScrFI CCNGG 3 cut(s) 1083, 1501, 1606
SfaNI GCATC 7 cut(s) 36, 631, 1045, 1260, 1560, 1597, 1634
SinI GGWCC 1 cut(s) 1661
SmiMI CAYNNNNRTG 3 cut(s) 1023, 1137, 1593
SpeI ACTAGT 1 cut(s) 1310
SphI GCATGC 1 cut(s) 1329
SseBI AGGCCT 1 cut(s) 1550
SsiI CCGC 6 cut(s) 162, 251, 412, 627, 914, 1647
SspI AATATT 1 cut(s) 121
SspMI CTAG 4 cut(s) 882, 1113, 1311, 1533
StuI AGGCCT 1 cut(s) 1550
StyD4I CCNGG 3 cut(s) 1081, 1499, 1604
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 4 cut(s) 445, 1016, 1050, 1541
TaiI ACGT 2 cut(s) 93, 1404
TaqI TCGA 8 cut(s) 24, 473, 552, 755, 834, 905, 1482, 1617
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 1 cut(s) 1577
Tru1I TTAA 4 cut(s) 41, 938, 1337, 1696
Tru9I TTAA 4 cut(s) 41, 938, 1337, 1696
TseFI GTSAC 3 cut(s) 439, 1016, 1600
TseI GCWGC 1 cut(s) 1457
Tsp45I GTSAC 3 cut(s) 439, 1016, 1600
TspDTI ATGAA 6 cut(s) 26, 249, 512, 881, 1381, 1569
TspGWI ACGGA 2 cut(s) 193, 446
Van91I CCANNNNNTGG 1 cut(s) 1676
VpaK11BI GGWCC 1 cut(s) 1661
XapI RAATTY 8 cut(s) 27, 33, 256, 308, 326, 383, 499, 676
XceI RCATGY 3 cut(s) 616, 1329, 1634
XspI CTAG 4 cut(s) 882, 1113, 1311, 1533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.