pycom15g01770

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008721
Physical Location & Seq
Forward (+)
1015611 .. 1017204
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1323 bp
ATGCAGGCCTACTGTGTTAATCCTAATTCTGTTACTATATTGAGTGTCCTGCCTGCTTGTGCAAATCTAGTTGCCACGAAAAAGGTGAAAGAGATCCACGGTAGTGTATTGCGTAGAAATTTGGAGTCCGAAGTCCCTGTTGCAAATTCCCTGATAGACACCTATGCCAAATCGGGAAATATAGCATATTCAAGAATCATATTTGCTAGAATGCCATCCAAAGATATCATCACTTGGAACTCGGCAATTTCTGGTTGTGTCTTACATGGTCTTTCAGACATTGCACTTGACCTTTTTGATCAGCTGAAGAAGTCGGGGTTTAAACCAAATAGAGGTACCTTTACAAGTATCATATATGCATACAGTCTTGCTGGAATGATAGATGAGGGAAGACAAGCTTTTTACAGCATCAGTGAAAACTACCAAATCATACCAGGTCTAGAACATTATTCAGCCATGGTAGATCTTTTTGGGCGTTCTGGAAGGCTTCAAGAAGCAATGCAGTTTATTGAAGATATGCCCATAGAACCAGACTCCTCTATTTGGGCTGCCTTATTTACCGCATGTAGGATTCATGGGAATCTTGCCTTGGCAGTTCGTGCAGGGGAGCATTTAATCGACTTGGAACCAGGAAATATTTTGGTTCAACAGTTACTTCTACAGTCATATTCTTTATGTGGTAAGTCTGAGGACACTTCAAAATTGAAAAAGTTTGGTAGAGATGCTGCAATAAAGAAATTTATTGGGCAGTGCTGGATTGAGGTAAAGAACTCGGTGCATACGTATGTTGCAGGTGATAGGTTGGAACTATGCTCAAACTTTCTAAATTCATGGTTACAAAACATAGAAGAAAAAGCAAAGAGACATGATTTTGGTAATGAGCTTTGTGTTGAGGAAGAAGAGGGGGGTATCAGCTGGGTCCATAGCGAAAACCTGGCATTTGCTTTTGCCCTCATTGGCTCCCCAAGTGTACCTAAGAGTATTAGGATGGTGAAGAATCTGAGAATGTGTGGAAACTGCCACAGGATGGCGAAGTATATATCTATGGCTTTTGGGTGTGAGATATATTTGAGCGACTCAAAGTCCTTTCACCATTTTAGTAATGGCCGTTGTTCATGTGATCCAAAGCCATGGCTCAGAGAGAAGCGCCTTCGGCTCCCTTCCATTTCCATTGCGCAGAACTCCACCTGCTCCGGCGTGGCCTTGCTATCCTCTGCAACCACCATATATTTAAGCTTAAACCAACATTTAGGAGGGGGAAGCCAACGAAGGACTTCGATCTGCCTAGAGGATTTAGAAGACAATGGCTTGGGTGGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calreticulin DYW_deaminase Jacalin PPR PPR_2 PPR_3

Protein Analysis

441

Amino Acids

48.68

Weight (kDa)

7.52

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 74 - 121 7.6e-10 PPR repeat family
PPR PF01535 77 - 107 9.9e-06 PPR repeat
DYW_deaminase PF14432 297 - 374 3.6e-23 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 782, 1196
Acc16I TGCGCA 1 cut(s) 1176
Acc36I ACCTGC 2 cut(s) 782, 1196
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 1027
AciI CCGC 1 cut(s) 561
AclWI GGATC 2 cut(s) 88, 1115
AcoI YGGCCR 1 cut(s) 1105
AcsI RAATTY 4 cut(s) 118, 145, 737, 826
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 2 cut(s) 337, 972
AfiI CCNNNNNNNGG 4 cut(s) 332, 543, 567, 1027
AgsI TTSAA 6 cut(s) 192, 491, 512, 647, 699, 706
AhdI GACNNNNNGTC 1 cut(s) 1081
AjnI CCWGG 3 cut(s) 433, 628, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 5 cut(s) 304, 398, 883, 915, 1236
AluI AGCT 5 cut(s) 304, 398, 883, 915, 1236
Alw26I GTCTC 1 cut(s) 856
AlwI GGATC 2 cut(s) 88, 1115
AoxI GGCC 3 cut(s) 6, 1105, 1200
ApeKI GCWGC 2 cut(s) 548, 725
ApoI RAATTY 4 cut(s) 118, 145, 737, 826
Asp700I GAANNNNTTC 1 cut(s) 1273
Asp718I GGTACC 1 cut(s) 335
AspLEI GCGC 2 cut(s) 1149, 1177
AspS9I GGNCC 2 cut(s) 919, 1317
AsuHPI GGTGA 4 cut(s) 97, 806, 1003, 1082
AvaII GGWCC 2 cut(s) 919, 1317
BanI GGYRCC 1 cut(s) 335
BbsI GAAGAC 2 cut(s) 397, 1305
BbvI GCAGC 2 cut(s) 535, 712
BccI CCATC 3 cut(s) 223, 982, 1021
BceAI ACGGC 1 cut(s) 1092
BciT130I CCWGG 3 cut(s) 435, 630, 935
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 856
BfaI CTAG 4 cut(s) 68, 207, 440, 1286
BfmI CTRYAG 1 cut(s) 659
BfoI RGCGCY 1 cut(s) 1150
BfuAI ACCTGC 2 cut(s) 782, 1196
BglII AGATCT 1 cut(s) 463
BisI GCNGC 2 cut(s) 549, 726
BlsI GCNGC 2 cut(s) 550, 727
Bme1390I CCNGG 3 cut(s) 435, 630, 935
Bme18I GGWCC 2 cut(s) 919, 1317
BmeRI GACNNNNNGTC 1 cut(s) 1081
BmgT120I GGNCC 2 cut(s) 919, 1317
BmiI GGNNCC 6 cut(s) 337, 627, 920, 961, 1157, 1318
BmrFI CCNGG 3 cut(s) 435, 630, 935
BmsI GCATC 2 cut(s) 417, 712
BpiI GAAGAC 2 cut(s) 397, 1305
BsaAI YACGTR 1 cut(s) 783
BsaJI CCNNGG 4 cut(s) 97, 456, 588, 1130
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 543, 567, 1027
Bse3DI GCAATG 3 cut(s) 279, 504, 1170
BseBI CCWGG 3 cut(s) 435, 630, 935
BseDI CCNNGG 4 cut(s) 97, 456, 588, 1130
BseGI GGATG 3 cut(s) 215, 993, 1032
BseLI CCNNNNNNNGG 4 cut(s) 332, 543, 567, 1027
BseMI GCAATG 3 cut(s) 279, 504, 1170
BseMII CTCAG 3 cut(s) 678, 992, 1150
BseRI GAGGAG 1 cut(s) 526
BseXI GCAGC 2 cut(s) 535, 712
BseYI CCCAGC 1 cut(s) 915
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 3 cut(s) 8, 1107, 1202
BshNI GGYRCC 1 cut(s) 335
BsiSI CCGG 1 cut(s) 1194
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 4 cut(s) 332, 543, 567, 1027
BsmAI GTCTC 1 cut(s) 856
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 3 cut(s) 8, 1107, 1202
Bsp143I GATC 5 cut(s) 93, 298, 463, 1120, 1278
Bsp19I CCATGG 2 cut(s) 456, 1130
BspACI CCGC 1 cut(s) 561
BspANI GGCC 3 cut(s) 8, 1107, 1202
BspCNI CTCAG 3 cut(s) 679, 993, 1149
BspLI GGNNCC 6 cut(s) 337, 627, 920, 961, 1157, 1318
BspMI ACCTGC 2 cut(s) 782, 1196
BspPI GGATC 2 cut(s) 88, 1115
BspT107I GGYRCC 1 cut(s) 335
BsrDI GCAATG 3 cut(s) 279, 504, 1170
BssECI CCNNGG 4 cut(s) 97, 456, 588, 1130
BssMI GATC 5 cut(s) 93, 298, 463, 1120, 1278
BssT1I CCWWGG 3 cut(s) 456, 588, 1130
Bst2UI CCWGG 3 cut(s) 435, 630, 935
Bst4CI ACNGT 5 cut(s) 14, 101, 365, 651, 663
Bst6I CTCTTC 1 cut(s) 894
BstAPI GCANNNNNTGC 1 cut(s) 599
BstBAI YACGTR 1 cut(s) 783
BstC8I GCNNGC 2 cut(s) 6, 54
BstDEI CTNAG 4 cut(s) 687, 975, 1001, 1136
BstDSI CCRYGG 3 cut(s) 97, 456, 1130
BstF5I GGATG 3 cut(s) 215, 993, 1032
BstH2I RGCGCY 1 cut(s) 1150
BstHHI GCGC 2 cut(s) 1149, 1177
BstKTI GATC 5 cut(s) 96, 301, 466, 1123, 1281
BstMAI GTCTC 1 cut(s) 856
BstMBI GATC 5 cut(s) 93, 298, 463, 1120, 1278
BstMWI GCNNNNNNNGC 2 cut(s) 599, 1153
BstNI CCWGG 3 cut(s) 435, 630, 935
BstNSI RCATGY 1 cut(s) 567
BstSCI CCNGG 3 cut(s) 433, 628, 933
BstSFI CTRYAG 1 cut(s) 659
BstSNI TACGTA 1 cut(s) 783
BstV1I GCAGC 2 cut(s) 535, 712
BstV2I GAAGAC 2 cut(s) 397, 1305
BstX2I RGATCY 2 cut(s) 93, 463
BstXI CCANNNNNNTGG 1 cut(s) 1131
BstYI RGATCY 2 cut(s) 93, 463
BsuRI GGCC 3 cut(s) 8, 1107, 1202
BtgI CCRYGG 3 cut(s) 97, 456, 1130
BtsCI GGATG 3 cut(s) 215, 993, 1032
BtsI GCAGTG 1 cut(s) 755
BtsIMutI CAGTG 2 cut(s) 418, 755
BveI ACCTGC 2 cut(s) 782, 1196
Cac8I GCNNGC 2 cut(s) 6, 54
CfoI GCGC 2 cut(s) 1149, 1177
Cfr13I GGNCC 2 cut(s) 919, 1317
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 2 cut(s) 336, 971
CviAII CATG 8 cut(s) 266, 457, 564, 575, 831, 866, 1116, 1131
CviQI GTAC 2 cut(s) 336, 971
DdeI CTNAG 4 cut(s) 687, 975, 1001, 1136
DpnI GATC 5 cut(s) 95, 300, 465, 1122, 1280
DpnII GATC 5 cut(s) 93, 298, 463, 1120, 1278
DraI TTTAAA 1 cut(s) 322
DriI GACNNNNNGTC 1 cut(s) 1081
EaeI YGGCCR 1 cut(s) 1105
Eam1104I CTCTTC 1 cut(s) 894
Eam1105I GACNNNNNGTC 1 cut(s) 1081
EarI CTCTTC 1 cut(s) 894
Eco105I TACGTA 1 cut(s) 783
Eco130I CCWWGG 3 cut(s) 456, 588, 1130
Eco147I AGGCCT 1 cut(s) 8
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 919, 1317
Eco57I CTGAAG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 1317
EcoRII CCWGG 3 cut(s) 433, 628, 933
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 3 cut(s) 456, 588, 1130
EcoT22I ATGCAT 1 cut(s) 361
ErhI CCWWGG 3 cut(s) 456, 588, 1130
FaeI CATG 8 cut(s) 269, 460, 567, 578, 834, 869, 1119, 1134
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FaqI GGGAC 1 cut(s) 119
FatI CATG 8 cut(s) 265, 456, 563, 574, 830, 865, 1115, 1130
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 549, 726
FokI GGATG 3 cut(s) 202, 1000, 1039
Fsp4HI GCNGC 2 cut(s) 549, 726
FspBI CTAG 4 cut(s) 68, 207, 440, 1286
FspI TGCGCA 1 cut(s) 1176
GlaI GCGC 2 cut(s) 1148, 1176
GluI GCNGC 2 cut(s) 549, 726
GsaI CCCAGC 1 cut(s) 919
HaeII RGCGCY 1 cut(s) 1150
HaeIII GGCC 3 cut(s) 8, 1107, 1202
HapII CCGG 1 cut(s) 1194
HhaI GCGC 2 cut(s) 1149, 1177
Hin1II CATG 8 cut(s) 269, 460, 567, 578, 834, 869, 1119, 1134
Hin6I GCGC 2 cut(s) 1147, 1175
HinP1I GCGC 2 cut(s) 1147, 1175
HindIII AAGCTT 2 cut(s) 396, 1234
HinfI GANTC 7 cut(s) 125, 195, 533, 571, 580, 997, 1076
HpaII CCGG 1 cut(s) 1194
HphI GGTGA 4 cut(s) 97, 806, 1003, 1082
Hpy166II GTNNAC 1 cut(s) 971
Hpy188I TCNGA 5 cut(s) 130, 277, 688, 1002, 1139
Hpy188III TCNNGA 5 cut(s) 174, 192, 440, 480, 491
Hpy8I GTNNAC 1 cut(s) 971
HpyAV CCTTC 4 cut(s) 477, 1160, 1170, 1263
HpyCH4III ACNGT 5 cut(s) 14, 101, 365, 651, 663
HpyCH4IV ACGT 1 cut(s) 782
HpyF10VI GCNNNNNNNGC 2 cut(s) 599, 1153
HpyF3I CTNAG 4 cut(s) 687, 975, 1001, 1136
HpySE526I ACGT 1 cut(s) 782
Hsp92II CATG 8 cut(s) 269, 460, 567, 578, 834, 869, 1119, 1134
HspAI GCGC 2 cut(s) 1147, 1175
KpnI GGTACC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 5 cut(s) 93, 298, 463, 1120, 1278
LmnI GCTCC 4 cut(s) 607, 965, 1161, 1196
Lsp1109I GCAGC 2 cut(s) 535, 712
LweI GCATC 2 cut(s) 417, 712
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 4 cut(s) 68, 207, 440, 1286
MaeII ACGT 1 cut(s) 782
MaeIII GTNAC 3 cut(s) 31, 651, 834
MalI GATC 5 cut(s) 95, 300, 465, 1122, 1280
MboI GATC 5 cut(s) 93, 298, 463, 1120, 1278
MboII GAAGA 8 cut(s) 319, 402, 524, 860, 908, 911, 1006, 1310
MflI RGATCY 2 cut(s) 93, 463
MluCI AATT 7 cut(s) 25, 118, 145, 246, 701, 737, 826
MlyI GAGTC 3 cut(s) 134, 527, 1070
MmeI TCCRAC 1 cut(s) 783
Mph1103I ATGCAT 1 cut(s) 361
MroXI GAANNNNTTC 1 cut(s) 1273
MseI TTAA 5 cut(s) 18, 321, 614, 1232, 1238
MslI CAYNNNNRTG 2 cut(s) 102, 783
MspA1I CMGCKG 2 cut(s) 304, 915
MspI CCGG 1 cut(s) 1194
MspR9I CCNGG 3 cut(s) 435, 630, 935
MssI GTTTAAAC 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 3 cut(s) 435, 630, 935
MwoI GCNNNNNNNGC 2 cut(s) 599, 1153
NcoI CCATGG 2 cut(s) 456, 1130
NdeII GATC 5 cut(s) 93, 298, 463, 1120, 1278
NlaIII CATG 8 cut(s) 269, 460, 567, 578, 834, 869, 1119, 1134
NlaIV GGNNCC 6 cut(s) 337, 627, 920, 961, 1157, 1318
NmeAIII GCCGAG 1 cut(s) 221
NsbI TGCGCA 1 cut(s) 1176
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 567
OliI CACNNNNGTG 1 cut(s) 102
PaqCI CACCTGC 2 cut(s) 782, 1196
PceI AGGCCT 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 779
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 1273
PfeI GAWTC 4 cut(s) 195, 571, 580, 997
PflMI CCANNNNNTGG 1 cut(s) 1027
PkrI GCNGC 2 cut(s) 550, 727
PleI GAGTC 3 cut(s) 133, 527, 1070
PmeI GTTTAAAC 1 cut(s) 322
PpsI GAGTC 3 cut(s) 133, 527, 1070
Ppu21I YACGTR 1 cut(s) 783
PpuMI RGGWCCY 1 cut(s) 1317
Psp5II RGGWCCY 1 cut(s) 1317
Psp6I CCWGG 3 cut(s) 433, 628, 933
PspFI CCCAGC 1 cut(s) 915
PspGI CCWGG 3 cut(s) 433, 628, 933
PspN4I GGNNCC 6 cut(s) 337, 627, 920, 961, 1157, 1318
PspPI GGNCC 2 cut(s) 919, 1317
PspPPI RGGWCCY 1 cut(s) 1317
PsuI RGATCY 2 cut(s) 93, 463
PvuII CAGCTG 2 cut(s) 304, 915
RsaI GTAC 2 cut(s) 337, 972
RsaNI GTAC 2 cut(s) 336, 971
RseI CAYNNNNRTG 2 cut(s) 102, 783
SaqAI TTAA 5 cut(s) 18, 321, 614, 1232, 1238
SatI GCNGC 2 cut(s) 549, 726
Sau3AI GATC 5 cut(s) 93, 298, 463, 1120, 1278
Sau96I GGNCC 2 cut(s) 919, 1317
SchI GAGTC 3 cut(s) 134, 527, 1070
ScrFI CCNGG 3 cut(s) 435, 630, 935
SexAI ACCWGGT 1 cut(s) 433
SfaNI GCATC 2 cut(s) 417, 712
SfcI CTRYAG 1 cut(s) 659
SinI GGWCC 2 cut(s) 919, 1317
SmiMI CAYNNNNRTG 2 cut(s) 102, 783
SnaBI TACGTA 1 cut(s) 783
Sse9I AATT 7 cut(s) 25, 118, 145, 246, 701, 737, 826
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 1 cut(s) 561
SspI AATATT 1 cut(s) 637
SspMI CTAG 4 cut(s) 68, 207, 440, 1286
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 3 cut(s) 433, 628, 933
StyI CCWWGG 3 cut(s) 456, 588, 1130
TaaI ACNGT 5 cut(s) 14, 101, 365, 651, 663
TaiI ACGT 1 cut(s) 785
TaqI TCGA 2 cut(s) 618, 1277
TasI AATT 7 cut(s) 25, 118, 145, 246, 701, 737, 826
TfiI GAWTC 4 cut(s) 195, 571, 580, 997
Tru1I TTAA 5 cut(s) 18, 321, 614, 1232, 1238
Tru9I TTAA 5 cut(s) 18, 321, 614, 1232, 1238
TscAI CASTG 2 cut(s) 418, 755
TseI GCWGC 2 cut(s) 548, 725
TspDTI ATGAA 3 cut(s) 563, 819, 1104
TspRI CASTG 2 cut(s) 418, 755
Van91I CCANNNNNTGG 1 cut(s) 1027
VpaK11BI GGWCC 2 cut(s) 919, 1317
XapI RAATTY 4 cut(s) 118, 145, 737, 826
XbaI TCTAGA 1 cut(s) 439
XceI RCATGY 1 cut(s) 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 1100
XmnI GAANNNNTTC 1 cut(s) 1273
XspI CTAG 4 cut(s) 68, 207, 440, 1286
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.