pycom15g03810

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012899
Physical Location & Seq
Forward (+)
2330199 .. 2331354
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
ATGATTATTTATCATTGTACGCCCGACATGCAAAAAATAATAACTTTCCTTAAGAAAATTAATAAAATCGAGCAAATATTGCATTCACCGAAGTACAAGTACAAGTCTGCAACGTTTCGAATCCAGCCAGTGTGCACTGACAGGGCCCAAGCCCTGCAACAAGGTGTTGTAGTCTTTCCATGCTTTTCTGACCGTTGCAAGAAACGTTTTCTGCTCCGTTGCTTTAACGTTTTCCCTAACCCCACAACGCCACGACTCCAATTCTCTCTCTCCCTCTCACACACTCAAATTCTTCAAAATCCGACAACACACTTGCGGACACACTCTCTAATGGCTGGCTTTTCATCCTCGAAAGCTCTGTCATACTCCTCTCTTCTCGTGGTCTTTCTCCTCTTCAGCTTCTCCGAAGCCAGAGAGTTCAACATCGGCGGCAAGAATGGCTCATGGGCAGTCCCCTCCTCCGAATCCCAATCCCTCAACAAATGGGCTGAAAGCACCCGCTTTCGCGTCGGCGACACTCTCGTGTGGAAGTACGACAGCGCCAAAGACTCAGTGTTGCGAGTGACGAAAGAAGACTACACAAACTGCAATGCATCGAACCCTATTGAGCAGTACAAGGACGACGAGACCAAGCTCCACCTCGACCAGCCGGGGCCTTACTACTTCATCAGCGGAACCAAGGGACACTGCGAGAAAGGGCAGAAGCTGGTCGTGGTTGTTATGACTCCAAGGAAGCACCTCGGTATCTCCCCCGCTCCTTCTCCGGCTGGGGAGGTTGACGGTCCCGCTGTTGCTCCTACCAGCGGTGCTACAAGCTTGCAGGGTGGTGTTCTGACTCTGGTGGCATTGGGAGTTTTTGCTGTATGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

291

Amino Acids

32.32

Weight (kDa)

9.4

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 149 - 234 7.5e-27 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25060 AT4G31840 AT5G25090
fragaria_vesca FvH4_2g41150
malus_domestica MD08G1056100.v1.1 MD15G1040900.v1.1
prunus_persica Prupe.1G394200_v2.0.a1
pyrus_communis pycom08g04610 pycom15g03810
rosa_chinensis RchiOBHm_Chr6g0299381
rosa_laevigata RLG00000011437
rosa_roxburghii Rroxscaffold_7G00168740
rosa_rugosa Rorug06G0287700
rosa_samantha Rh6AG399300 Rh6BG407800 Rh6CG413600 Rh6DG400500
rosa_wichuraiana Rw6G034960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 755
AccII CGCG 1 cut(s) 507
AciI CCGC 7 cut(s) 316, 429, 499, 672, 753, 786, 804
AclI AACGTT 3 cut(s) 113, 205, 228
AcsI RAATTY 1 cut(s) 288
AcuI CTGAAG 1 cut(s) 379
AfaI GTAC 5 cut(s) 19, 95, 101, 533, 614
AfiI CCNNNNNNNGG 1 cut(s) 803
AflII CTTAAG 1 cut(s) 50
AgsI TTSAA 2 cut(s) 296, 421
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 5 cut(s) 356, 399, 634, 706, 816
AluI AGCT 5 cut(s) 356, 399, 634, 706, 816
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 620
Alw44I GTGCAC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 706
AoxI GGCC 2 cut(s) 144, 653
ApaI GGGCCC 1 cut(s) 148
ApaLI GTGCAC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 288
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 1 cut(s) 60
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 4 cut(s) 144, 145, 653, 782
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 1 cut(s) 78
AsuII TTCGAA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 782
BaeGI GKGCMC 2 cut(s) 137, 148
BaeI ACNNNNGTAYC 2 cut(s) 727, 760
BanII GRGCYC 1 cut(s) 148
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BauI CACGAG 2 cut(s) 377, 521
BbsI GAAGAC 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 137
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 1 cut(s) 620
BfoI RGCGCY 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 50
BisI GCNGC 1 cut(s) 430
BlsI GCNGC 1 cut(s) 431
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 782
BmgT120I GGNCC 4 cut(s) 144, 145, 653, 782
BmiI GGNNCC 4 cut(s) 146, 654, 676, 784
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 602
BpiI GAAGAC 1 cut(s) 579
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 4 cut(s) 650, 678, 728, 739
Bsc4I CCNNNNNNNGG 1 cut(s) 803
Bse1I ACTGG 1 cut(s) 128
Bse3DI GCAATG 1 cut(s) 595
BseDI CCNNGG 4 cut(s) 650, 678, 728, 739
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 803
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 128
BseRI GAGGAG 3 cut(s) 358, 380, 448
BseSI GKGCMC 2 cut(s) 137, 148
BseYI CCCAGC 1 cut(s) 767
Bsh1236I CGCG 1 cut(s) 507
BshFI GGCC 2 cut(s) 146, 655
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 650, 764
BslFI GGGAC 3 cut(s) 437, 696, 768
BslI CCNNNNNNNGG 1 cut(s) 803
BsmAI GTCTC 1 cut(s) 620
BsmFI GGGAC 3 cut(s) 437, 696, 768
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 2 cut(s) 146, 655
Bso31I GGTCTC 1 cut(s) 620
Bsp119I TTCGAA 1 cut(s) 118
Bsp120I GGGCCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 137, 148
BspACI CCGC 7 cut(s) 316, 429, 499, 672, 753, 786, 804
BspANI GGCC 2 cut(s) 146, 655
BspCNI CTCAG 1 cut(s) 563
BspFNI CGCG 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 146, 654, 676, 784
BspT104I TTCGAA 1 cut(s) 118
BspTI CTTAAG 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 620
BsrBI CCGCTC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 650, 678, 728, 739
BssSI CACGAG 2 cut(s) 377, 521
BssT1I CCWWGG 2 cut(s) 678, 728
Bst2BI CACGAG 2 cut(s) 377, 521
Bst4CI ACNGT 2 cut(s) 194, 782
Bst6I CTCTTC 2 cut(s) 378, 398
BstAFI CTTAAG 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 337, 818
BstDEI CTNAG 1 cut(s) 550
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 507
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstMAI GTCTC 1 cut(s) 620
BstMWI GCNNNNNNNGC 3 cut(s) 28, 79, 438
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 649
BstSLI GKGCMC 2 cut(s) 137, 148
BstUI CGCG 1 cut(s) 507
BstV2I GAAGAC 1 cut(s) 579
BsuRI GGCC 2 cut(s) 146, 655
BtsCI GGATG 1 cut(s) 344
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 4 cut(s) 135, 135, 558, 685
Cac8I GCNNGC 2 cut(s) 337, 818
CaiI CAGNNNCTG 1 cut(s) 706
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 4 cut(s) 144, 145, 653, 782
CseI GACGC 1 cut(s) 496
Csp6I GTAC 5 cut(s) 18, 94, 100, 532, 613
CviAII CATG 3 cut(s) 28, 180, 444
CviQI GTAC 5 cut(s) 18, 94, 100, 532, 613
DdeI CTNAG 1 cut(s) 550
Eam1104I CTCTTC 2 cut(s) 378, 398
EarI CTCTTC 2 cut(s) 378, 398
Eco130I CCWWGG 2 cut(s) 678, 728
Eco24I GRGCYC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 379
EcoO109I RGGNCCY 2 cut(s) 144, 653
EcoT14I CCWWGG 2 cut(s) 678, 728
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 2 cut(s) 678, 728
FaeI CATG 3 cut(s) 31, 183, 447
FaiI YATR 6 cut(s) 29, 181, 364, 445, 722, 865
FaqI GGGAC 3 cut(s) 437, 696, 768
FatI CATG 3 cut(s) 27, 179, 443
FauI CCCGC 3 cut(s) 506, 760, 793
Fnu4HI GCNGC 1 cut(s) 430
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 430
GlaI GCGC 1 cut(s) 541
GluI GCNGC 1 cut(s) 430
GsaI CCCAGC 1 cut(s) 771
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 2 cut(s) 146, 655
HapII CCGG 2 cut(s) 650, 764
HgaI GACGC 1 cut(s) 496
HhaI GCGC 1 cut(s) 542
Hin1II CATG 3 cut(s) 31, 183, 447
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 1 cut(s) 814
HinfI GANTC 6 cut(s) 120, 255, 464, 548, 724, 835
HpaII CCGG 2 cut(s) 650, 764
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 2 cut(s) 135, 778
Hpy188I TCNGA 5 cut(s) 190, 303, 406, 463, 834
Hpy8I GTNNAC 2 cut(s) 135, 778
Hpy99I CGWCG 2 cut(s) 512, 626
HpyAV CCTTC 1 cut(s) 768
HpyCH4III ACNGT 2 cut(s) 194, 782
HpyCH4IV ACGT 3 cut(s) 113, 205, 228
HpyCH4V TGCA 9 cut(s) 31, 82, 110, 135, 157, 198, 588, 593, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 79, 438
HpyF3I CTNAG 1 cut(s) 550
HpySE526I ACGT 3 cut(s) 113, 205, 228
Hsp92II CATG 3 cut(s) 31, 183, 447
HspAI GCGC 1 cut(s) 540
LmnI GCTCC 4 cut(s) 219, 639, 760, 799
LweI GCATC 1 cut(s) 602
MaeII ACGT 3 cut(s) 113, 205, 228
MaeIII GTNAC 1 cut(s) 562
MbiI CCGCTC 1 cut(s) 755
MboII GAAGA 4 cut(s) 284, 365, 385, 584
MhlI GDGCHC 2 cut(s) 137, 148
MluCI AATT 3 cut(s) 57, 260, 288
MlyI GAGTC 4 cut(s) 249, 542, 718, 829
MmeI TCCRAC 1 cut(s) 326
Mph1103I ATGCAT 1 cut(s) 595
MseI TTAA 3 cut(s) 51, 60, 225
MslI CAYNNNNRTG 1 cut(s) 521
MspA1I CMGCKG 3 cut(s) 672, 788, 804
MspCI CTTAAG 1 cut(s) 50
MspI CCGG 2 cut(s) 650, 764
MspR9I CCNGG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 82
MvnI CGCG 1 cut(s) 507
MwoI GCNNNNNNNGC 3 cut(s) 28, 79, 438
NciI CCSGG 1 cut(s) 651
NlaIII CATG 3 cut(s) 31, 183, 447
NlaIV GGNNCC 4 cut(s) 146, 654, 676, 784
NmuCI GTSAC 1 cut(s) 562
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 31
NspV TTCGAA 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 521
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 120, 464
PkrI GCNGC 1 cut(s) 431
PleI GAGTC 4 cut(s) 249, 542, 718, 829
PpsI GAGTC 4 cut(s) 249, 542, 718, 829
PshBI ATTAAT 1 cut(s) 60
Psp1406I AACGTT 3 cut(s) 113, 205, 228
PspFI CCCAGC 1 cut(s) 767
PspN4I GGNNCC 4 cut(s) 146, 654, 676, 784
PspOMI GGGCCC 1 cut(s) 144
PspPI GGNCC 4 cut(s) 144, 145, 653, 782
PstNI CAGNNNCTG 1 cut(s) 706
RsaI GTAC 5 cut(s) 19, 95, 101, 533, 614
RsaNI GTAC 5 cut(s) 18, 94, 100, 532, 613
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 3 cut(s) 51, 60, 225
SatI GCNGC 1 cut(s) 430
Sau96I GGNCC 4 cut(s) 144, 145, 653, 782
SchI GAGTC 4 cut(s) 249, 542, 718, 829
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 2 cut(s) 137, 148
SfaNI GCATC 1 cut(s) 602
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 3 cut(s) 57, 260, 288
SsiI CCGC 7 cut(s) 316, 429, 499, 672, 753, 786, 804
SspI AATATT 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 2 cut(s) 678, 728
TaaI ACNGT 2 cut(s) 194, 782
TaiI ACGT 3 cut(s) 116, 208, 231
TaqI TCGA 5 cut(s) 69, 118, 350, 596, 642
TasI AATT 3 cut(s) 57, 260, 288
TatI WGTACW 3 cut(s) 93, 99, 612
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 2 cut(s) 120, 464
Tru1I TTAA 3 cut(s) 51, 60, 225
Tru9I TTAA 3 cut(s) 51, 60, 225
TscAI CASTG 4 cut(s) 135, 142, 558, 692
TseFI GTSAC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 2 cut(s) 333, 655
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 4 cut(s) 135, 142, 558, 692
Vha464I CTTAAG 1 cut(s) 50
VneI GTGCAC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 782
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 1 cut(s) 288
XceI RCATGY 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.