pycom15g04080

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012955
Physical Location & Seq
Forward (+)
2476050 .. 2476330
281 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 234 bp
ATGAGCCAACAATGTATTGCTTCGACATTTCAGGAGCTCACACTGTCGGATCAGCTTGCTGCAGCGCATTCAGTTACCGGTTCAAGCAAGACCCCAAAGGAAAACTCACTCATTGATACATCCTTAGACAATGCTTATGCAGAGGAGCTCATGAGACAGTGCCCTGCAGCAGGTGCAAATCCGTCTACAACGGTAAAAAACGATCCTAAAACATCGTTTGCATTCGATAATTAG

Protein Analysis

78

Amino Acids

8.2

Weight (kDa)

4.56

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24800 AT2G24800 AT4G31760
fragaria_vesca FvH4_2g41361
malus_domestica MD08G1051200.v1.1
prunus_persica Prupe.1G397400_v2.0.a1
pyrus_communis pycom15g04080
rosa_chinensis RchiOBHm_Chr6g0299121
rosa_multiflora Rmu_co8172104.1_g000001 Rmu_sc0001434.1_g000019 Rmu_sc0007483.1_g000008
rosa_rugosa Rorug06G0285500
rosa_samantha Rh1CG254300 Rh6AG396500 Rh6BG404900 Rh6CG411000 Rh6DG397600
rosa_wichuraiana Rw6G034710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 161
Acc36I ACCTGC 1 cut(s) 161
AccI GTMKAC 1 cut(s) 185
AclWI GGATC 2 cut(s) 57, 197
AfiI CCNNNNNNNGG 1 cut(s) 170
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 84
AluBI AGCT 3 cut(s) 37, 55, 148
AluI AGCT 3 cut(s) 37, 55, 148
Alw21I GWGCWC 2 cut(s) 39, 150
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 57, 197
ApeKI GCWGC 3 cut(s) 59, 62, 167
AsiGI ACCGGT 1 cut(s) 77
AspLEI GCGC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 164
BanII GRGCYC 2 cut(s) 39, 150
Bbv12I GWGCWC 2 cut(s) 39, 150
BbvI GCAGC 3 cut(s) 46, 74, 179
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 2 cut(s) 60, 165
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 60, 63, 168
BlsI GCNGC 3 cut(s) 61, 64, 169
BsaWI WCCGGW 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 1 cut(s) 77
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 158
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 3 cut(s) 46, 74, 179
BshTI ACCGGT 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 39, 150
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 148
BsmI GAATGC 2 cut(s) 67, 221
Bsp1286I GDGCHC 3 cut(s) 39, 150, 164
Bsp143I GATC 2 cut(s) 49, 202
BspHI TCATGA 1 cut(s) 150
BspMAI CTGCAG 2 cut(s) 64, 169
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 2 cut(s) 57, 197
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 2 cut(s) 49, 202
Bst4CI ACNGT 3 cut(s) 45, 159, 193
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 124
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 2 cut(s) 52, 205
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 2 cut(s) 49, 202
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstSFI CTRYAG 2 cut(s) 60, 165
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 3 cut(s) 46, 74, 179
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 2 cut(s) 41, 164
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 57
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 1 cut(s) 151
CviJI RGCY 4 cut(s) 6, 37, 55, 148
CviKI_1 RGCY 4 cut(s) 6, 37, 55, 148
DdeI CTNAG 1 cut(s) 124
DpnI GATC 2 cut(s) 51, 204
DpnII GATC 2 cut(s) 49, 202
Ecl136II GAGCTC 2 cut(s) 37, 148
Eco24I GRGCYC 2 cut(s) 39, 150
Eco53kI GAGCTC 2 cut(s) 37, 148
EcoICRI GAGCTC 2 cut(s) 37, 148
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoT38I GRGCYC 2 cut(s) 39, 150
FaeI CATG 1 cut(s) 154
FaiI YATR 2 cut(s) 138, 152
FatI CATG 1 cut(s) 150
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 60, 63, 168
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 2 cut(s) 39, 150
Fsp4HI GCNGC 3 cut(s) 60, 63, 168
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 60, 63, 168
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 67
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HpaII CCGG 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 32, 151
Hpy8I GTNNAC 1 cut(s) 186
HpyCH4III ACNGT 3 cut(s) 45, 159, 193
HpyCH4V TGCA 5 cut(s) 62, 140, 167, 176, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 124
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 49, 202
LmnI GCTCC 2 cut(s) 34, 145
LpnPI CCDG 4 cut(s) 17, 91, 156, 177
Lsp1109I GCAGC 3 cut(s) 46, 74, 179
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 51, 204
MboI GATC 2 cut(s) 49, 202
MhlI GDGCHC 3 cut(s) 39, 150, 164
MluCI AATT 1 cut(s) 229
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 1 cut(s) 136
MspI CCGG 1 cut(s) 78
Mva1269I GAATGC 2 cut(s) 67, 221
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 2 cut(s) 49, 202
NlaIII CATG 1 cut(s) 154
PagI TCATGA 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 161
PctI GAATGC 2 cut(s) 67, 221
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 3 cut(s) 61, 64, 169
Psp124BI GAGCTC 2 cut(s) 39, 150
PstI CTGCAG 2 cut(s) 64, 169
SacI GAGCTC 2 cut(s) 39, 150
SatI GCNGC 3 cut(s) 60, 63, 168
Sau3AI GATC 2 cut(s) 49, 202
SduI GDGCHC 3 cut(s) 39, 150, 164
SetI ASST 4 cut(s) 39, 57, 150, 175
SfcI CTRYAG 2 cut(s) 60, 165
SgeI CNNG 8 cut(s) 44, 68, 90, 96, 100, 163, 176, 183
Sse9I AATT 1 cut(s) 229
SstI GAGCTC 2 cut(s) 39, 150
TaaI ACNGT 3 cut(s) 45, 159, 193
TaqI TCGA 2 cut(s) 23, 225
TasI AATT 1 cut(s) 229
TscAI CASTG 2 cut(s) 48, 164
TseI GCWGC 3 cut(s) 59, 62, 167
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 2 cut(s) 48, 164
XagI CCTNNNNNAGG 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.