pycom15g04120

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
2492905 .. 2493947
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGAATTTTAGCTCCTTTTTTTTCAGGTCTTTTGGTTTACATGTATTATTTCTTTGTCTAGTTCTCTGCTCTTTGGAGAAGGGTTTTGCCTTGGCAGGAAGGAAGGATAAACTTACTCATCACACAGTTCAGTTGAACTCTCTACTGCCAGCAACTACTTGCACCCCCTCCACCAAAGGTATGTATGTCAATATATTAATACATGCACGAATCGTGTTCCTTAATCGTCATGATGTCACTATTTTTCATGTTATATCAATGACAAATTTATGCAAATATATATTATCAATAGGACTGTTAACATATTACGTGTGTTGCGCTAGAGCATCAAATATAACAAATAAATTGATAGGCTTTTACTTTATTTCTTTTTCCATAATCCATATTATTAAAAAAATAAATGGTCCTAGTCTCAATACTTTTGGCAACTTTCAATGTGCTTGGCTGATAATTTGCTGGTTTTATAGAGTCTCACCTCGATTTGTTGATTGTTTCTTAGGGGGTGTATTTTTTTTTTTCGTGAAGTCTGAAGTGTCCCACACTTTGAAAAGTAGGACGATCATAATCAATTGGAACACGTCCTTCAAGCTATTTATAAGATTGTTCCAAAAATATTTTTACCAAAATCAAGTTTTAATCATTTTTTACACAATGCTTTATAATGTTAGCATGAAAATTAACTTTAAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

231

Amino Acids

26.82

Weight (kDa)

9.79

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017644)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 596, 660
AcsI RAATTY 2 cut(s) 4, 265
AcuI CTGAAG 1 cut(s) 549
AflIII ACRYGT 3 cut(s) 40, 309, 576
AgsI TTSAA 4 cut(s) 136, 434, 547, 586
AjiI CACGTC 1 cut(s) 579
AluBI AGCT 2 cut(s) 12, 589
AluI AGCT 2 cut(s) 12, 589
Alw26I GTCTC 2 cut(s) 416, 475
ApoI RAATTY 2 cut(s) 4, 265
AseI ATTAAT 1 cut(s) 197
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 465
AvaII GGWCC 1 cut(s) 404
BcoDI GTCTC 2 cut(s) 416, 475
BfaI CTAG 3 cut(s) 59, 321, 408
Bme18I GGWCC 1 cut(s) 404
BmgBI CACGTC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 404
BmsI GCATC 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 90
BseJI GATNNNNATC 1 cut(s) 563
BslFI GGGAC 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 416, 475
BsmFI GGGAC 1 cut(s) 520
Bsp143I GATC 1 cut(s) 558
BspHI TCATGA 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 127, 297
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 496
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 1 cut(s) 561
BstMAI GTCTC 2 cut(s) 416, 475
BstMBI GATC 1 cut(s) 558
BstNSI RCATGY 2 cut(s) 44, 206
BtrI CACGTC 1 cut(s) 579
Cac8I GCNNGC 1 cut(s) 150
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 404
CviAII CATG 5 cut(s) 41, 203, 230, 248, 670
CviJI RGCY 4 cut(s) 12, 354, 445, 589
CviKI_1 RGCY 4 cut(s) 12, 354, 445, 589
DdeI CTNAG 1 cut(s) 496
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
DraI TTTAAA 1 cut(s) 685
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 404
Eco57I CTGAAG 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 5 cut(s) 44, 206, 233, 251, 673
FaqI GGGAC 1 cut(s) 520
FatI CATG 5 cut(s) 40, 202, 229, 247, 669
FspBI CTAG 3 cut(s) 59, 321, 408
GlaI GCGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 320
Hin1II CATG 5 cut(s) 44, 206, 233, 251, 673
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 2 cut(s) 210, 468
HpaI GTTAAC 1 cut(s) 300
HphI GGTGA 1 cut(s) 465
Hpy166II GTNNAC 2 cut(s) 38, 300
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 2 cut(s) 230, 520
Hpy8I GTNNAC 2 cut(s) 38, 300
HpyAV CCTTC 4 cut(s) 73, 93, 97, 592
HpyCH4III ACNGT 2 cut(s) 127, 297
HpyCH4IV ACGT 2 cut(s) 309, 578
HpyCH4V TGCA 3 cut(s) 162, 206, 273
HpyF3I CTNAG 1 cut(s) 496
HpySE526I ACGT 2 cut(s) 309, 578
Hsp92II CATG 5 cut(s) 44, 206, 233, 251, 673
HspAI GCGC 1 cut(s) 318
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 558
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 4 cut(s) 10, 81, 162, 442
LweI GCATC 1 cut(s) 335
MaeI CTAG 3 cut(s) 59, 321, 408
MaeII ACGT 2 cut(s) 309, 578
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 560
MboI GATC 1 cut(s) 558
MfeI CAATTG 1 cut(s) 568
MluCI AATT 6 cut(s) 4, 265, 344, 450, 568, 675
MlyI GAGTC 1 cut(s) 477
MnlI CCTC 2 cut(s) 178, 486
MseI TTAA 7 cut(s) 197, 222, 299, 390, 635, 678, 684
MunI CAATTG 1 cut(s) 568
NdeII GATC 1 cut(s) 558
NlaIII CATG 5 cut(s) 44, 206, 233, 251, 673
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 2 cut(s) 44, 206
PagI TCATGA 1 cut(s) 229
PciI ACATGT 1 cut(s) 40
PfeI GAWTC 1 cut(s) 210
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Ppu21I YACGTR 1 cut(s) 310
PscI ACATGT 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 197
PsiI TTATAA 2 cut(s) 596, 660
PspPI GGNCC 1 cut(s) 404
SaqAI TTAA 7 cut(s) 197, 222, 299, 390, 635, 678, 684
Sau3AI GATC 1 cut(s) 558
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 1 cut(s) 477
SetI ASST 7 cut(s) 14, 29, 181, 312, 478, 581, 591
SfaNI GCATC 1 cut(s) 335
SinI GGWCC 1 cut(s) 404
Sse9I AATT 6 cut(s) 4, 265, 344, 450, 568, 675
SspI AATATT 1 cut(s) 614
SspMI CTAG 3 cut(s) 59, 321, 408
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 127, 297
TaiI ACGT 2 cut(s) 312, 581
TaqI TCGA 1 cut(s) 478
TasI AATT 6 cut(s) 4, 265, 344, 450, 568, 675
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 7 cut(s) 197, 222, 299, 390, 635, 678, 684
Tru9I TTAA 7 cut(s) 197, 222, 299, 390, 635, 678, 684
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 17, 236, 686
VpaK11BI GGWCC 1 cut(s) 404
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 2 cut(s) 4, 265
XceI RCATGY 2 cut(s) 44, 206
XspI CTAG 3 cut(s) 59, 321, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.