Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003623

Physical Location & Seq

Genomic Coordinates Reverse (-)

3425481 .. 3427476

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTATTATCTCGCCTTGAGAGGCATCTGGCTTTTACTGCTACCGCCTCCAAATCACGCCACGTGCATAATATTCCCCTACCTTCCATATTTATTTGGGGTACGCTTTCCCAAAAATCGCATCTTTAATCTTCCTGCTGTCGCAGATACAGGAATGGCGGACAAACCCAGCCGAGCTTTGGTTCTGTACGGAGATGGGTCGGCCCGATTCATCGACCCGTCACACACCCATCTCCACTCTCTCGCTTCCAAAGCTTCCTGTGGATTCCTGAGCCTCCCCATTTCTCCTCCCTCAGAAAGCGAGGACGAGAGAATAGTTAGAGAGTTTGCAGTACTGCTGGATGCATATGAAGCCTACCTTTATACGAGTTCAGGAATCACTGAAGAAGAAAGAGAGAAGAAATCCTTGATTCCCATATCCGAAAGGTTCATGGGGATGAAAGCTGCTATATTTACAAACAATTCAAGTTTGAAATCTTTTGGTACCAAACTTGGTTTCAGCGTATTCCAAATTGACGGTTTTCTTAAAAACAGTCCAGCAGGCGCTGAACAACGGGTTAATTTCGGGGCATCTGAGTTACTTAAGCTGCTTGGATTTCAAGAAGGAAAGGTAGTGGAGTCGAGCCAGTATGATTTGGTCTTTGTTCATGTTGGGGCTGCTGAGGTGGAATATCTCAATGCTTTGGTTGGTGCTATATCGCAAATAGACCAGCCGGTATCTGAGGTCAGTTCCCGCTTGCACTTGTCCGTTGTGTTAAACTATGGGAAGGTTTCAGAAAACGATGTTACCAATTTGTCCGTCTCAATCAGAAAAGATGATGAAAACTCTGATCTTGCGAAGCTTATTCCTCGTCAAAGTTACACCATGAAAGGAGAGAATCCTCGGAAGGATGTTAGGGACCATTGCCCAATGTTAATTGCTCAGTGGCAATATGCCGTAACCCGCAAGGATATGGCAGAGACATTTTCCTTTAAAGATTTCAAAGAGAATGGTGGAAATCTTGTAATACCGGCAGATAGGTTTCTGCATGAAGTGGCCTTTAAGCTTTGGAAGGCCCCCAAGTATGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

39.83

Weight (kDa)

6.47

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11810
fragaria_vesca	FvH4_2g31970 FvH4_2g31970 FvH4_2g31970
malus_domestica	MD08G1060900.v1.1 MD15G1060500.v1.1
prunus_persica	Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1 Prupe.1G412500_v2.0.a1
pyrus_communis	pycom15g05680
rosa_chinensis	RchiOBHm_Chr6g0290791 RchiOBHm_Chr6g0310851
rosa_laevigata	RLG00000010457 RLG00000012175
rosa_multiflora	Rmu_sc0009490.1_g000001 Rmu_sc0027713.1_g000004 Rmu_ssc0000395.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158250 Rroxscaffold_7G00176730
rosa_rugosa	Rorug06G0214600 Rorug06G0214700 Rorug06G0383500 Rorug06G0383500
rosa_samantha	Rh6AG325400 Rh6AG497200 Rh6BG333000 Rh6BG507200 Rh6CG338600 Rh6CG513200 Rh6DG326100 Rh6DG499900
rosa_wichuraiana	Rw6G028260 Rw6G043300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	4 cut(s)	44, 158, 733, 943
AcuI	CTGAAG	1 cut(s)	402
AcvI	CACGTG	1 cut(s)	63
AfaI	GTAC	4 cut(s)	102, 188, 333, 484
AfiI	CCNNNNNNNGG	2 cut(s)	178, 1064
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	465, 472, 599, 982
AjuI	GAANNNNNNNTTGG	2 cut(s)	479, 511
AluBI	AGCT	6 cut(s)	176, 254, 443, 586, 841, 1045
AluI	AGCT	6 cut(s)	176, 254, 443, 586, 841, 1045
Alw26I	GTCTC	2 cut(s)	805, 953
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	201, 1035, 1053
ApeKI	GCWGC	3 cut(s)	443, 586, 656
Asp718I	GGTACC	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	3 cut(s)	202, 898, 1054
AvaII	GGWCC	1 cut(s)	898
BanI	GGYRCC	1 cut(s)	482
BbrPI	CACGTG	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	430, 573, 643
BccI	CCATC	2 cut(s)	188, 237
BceAI	ACGGC	1 cut(s)	920
BcoDI	GTCTC	2 cut(s)	805, 953
BfoI	RGCGCY	1 cut(s)	546
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	3 cut(s)	444, 587, 657
BlsI	GCNGC	3 cut(s)	445, 588, 658
BmcAI	AGTACT	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	898
BmgT120I	GGNCC	3 cut(s)	202, 898, 1054
BmiI	GGNNCC	3 cut(s)	484, 899, 1056
BmsI	GCATC	4 cut(s)	33, 129, 331, 578
Bpu10I	CCTNAGC	2 cut(s)	269, 660
BpuEI	CTTGAG	1 cut(s)	37
BsaAI	YACGTR	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	881
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 1064
Bse118I	RCCGGY	2 cut(s)	712, 1009
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	901
BseDI	CCNNGG	1 cut(s)	881
BseGI	GGATG	3 cut(s)	346, 441, 895
BseLI	CCNNNNNNNGG	2 cut(s)	178, 1064
BseMI	GCAATG	1 cut(s)	901
BseMII	CTCAG	6 cut(s)	260, 306, 564, 651, 711, 935
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	430, 573, 643
BseYI	CCCAGC	1 cut(s)	167
BshFI	GGCC	3 cut(s)	203, 1037, 1055
BshNI	GGYRCC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	713, 1010
BslFI	GGGAC	1 cut(s)	911
BslI	CCNNNNNNNGG	2 cut(s)	178, 1064
BsmAI	GTCTC	2 cut(s)	805, 953
BsmBI	CGTCTC	1 cut(s)	805
BsmFI	GGGAC	1 cut(s)	911
BsnI	GGCC	3 cut(s)	203, 1037, 1055
Bsp143I	GATC	1 cut(s)	829
BspACI	CCGC	4 cut(s)	44, 158, 733, 943
BspANI	GGCC	3 cut(s)	203, 1037, 1055
BspCNI	CTCAG	6 cut(s)	261, 305, 565, 652, 712, 934
BspLI	GGNNCC	3 cut(s)	484, 899, 1056
BspT107I	GGYRCC	1 cut(s)	482
BspTI	CTTAAG	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	901
BsrFI	RCCGGY	2 cut(s)	712, 1009
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	2 cut(s)	712, 1009
BssECI	CCNNGG	1 cut(s)	881
BssMI	GATC	1 cut(s)	829
Bst4CI	ACNGT	2 cut(s)	518, 533
BstAFI	CTTAAG	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	541, 737
BstDEI	CTNAG	6 cut(s)	269, 292, 573, 660, 720, 921
BstF5I	GGATG	3 cut(s)	346, 441, 895
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	1 cut(s)	832
BstMAI	GTCTC	2 cut(s)	805, 953
BstMBI	GATC	1 cut(s)	829
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 251, 350
BstV1I	GCAGC	3 cut(s)	430, 573, 643
BsuRI	GGCC	3 cut(s)	203, 1037, 1055
BtsCI	GGATG	3 cut(s)	346, 441, 895
BtsIMutI	CAGTG	2 cut(s)	378, 929
Cac8I	GCNNGC	2 cut(s)	541, 737
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	2 cut(s)	712, 1009
Cfr13I	GGNCC	3 cut(s)	202, 898, 1054
Csp6I	GTAC	4 cut(s)	101, 187, 332, 483
CviAII	CATG	5 cut(s)	430, 647, 865, 1028, 1071
CviQI	GTAC	4 cut(s)	101, 187, 332, 483
DdeI	CTNAG	6 cut(s)	269, 292, 573, 660, 720, 921
DpnI	GATC	1 cut(s)	831
DpnII	GATC	1 cut(s)	829
DraI	TTTAAA	1 cut(s)	973
EciI	GGCGGA	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	898
Eco57I	CTGAAG	1 cut(s)	402
Eco72I	CACGTG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	1054
EcoT22I	ATGCAT	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	805
FaeI	CATG	5 cut(s)	433, 650, 868, 1031, 1074
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 389, 421
FaqI	GGGAC	1 cut(s)	911
FatI	CATG	5 cut(s)	429, 646, 864, 1027, 1070
FauI	CCCGC	2 cut(s)	740, 950
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	444, 587, 657
FokI	GGATG	3 cut(s)	353, 448, 902
Fsp4HI	GCNGC	3 cut(s)	444, 587, 657
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	3 cut(s)	444, 587, 657
GsaI	CCCAGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	203, 1037, 1055
HapII	CCGG	2 cut(s)	713, 1010
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	5 cut(s)	433, 650, 868, 1031, 1074
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HindIII	AAGCTT	3 cut(s)	252, 839, 1043
HinfI	GANTC	6 cut(s)	207, 264, 375, 409, 617, 877
HpaII	CCGG	2 cut(s)	713, 1010
Hpy188I	TCNGA	8 cut(s)	295, 421, 574, 721, 775, 809, 829, 885
Hpy188III	TCNNGA	3 cut(s)	268, 372, 599
HpyAV	CCTTC	5 cut(s)	92, 596, 760, 880, 1045
HpyCH4III	ACNGT	2 cut(s)	518, 533
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	5 cut(s)	66, 329, 344, 739, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 251, 350
HpyF3I	CTNAG	6 cut(s)	269, 292, 573, 660, 720, 921
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	5 cut(s)	433, 650, 868, 1031, 1074
HspAI	GCGC	1 cut(s)	543
KpnI	GGTACC	1 cut(s)	486
Kzo9I	GATC	1 cut(s)	829
LmnI	GCTCC	1 cut(s)	1067
Lsp1109I	GCAGC	3 cut(s)	430, 573, 643
LweI	GCATC	4 cut(s)	33, 129, 331, 578
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	5 cut(s)	219, 576, 784, 857, 937
MalI	GATC	1 cut(s)	831
MboI	GATC	1 cut(s)	829
MboII	GAAGA	4 cut(s)	122, 395, 398, 409
MluCI	AATT	5 cut(s)	460, 510, 559, 790, 915
MlyI	GAGTC	1 cut(s)	626
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	8 cut(s)	126, 525, 558, 582, 755, 914, 972, 1041
MslI	CAYNNNNRTG	1 cut(s)	434
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	2 cut(s)	713, 1010
MwoI	GCNNNNNNNGC	3 cut(s)	37, 251, 350
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	1 cut(s)	829
NlaIII	CATG	5 cut(s)	433, 650, 868, 1031, 1074
NlaIV	GGNNCC	3 cut(s)	484, 899, 1056
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	219
NsiI	ATGCAT	1 cut(s)	346
PfeI	GAWTC	5 cut(s)	207, 264, 375, 409, 877
PkrI	GCNGC	3 cut(s)	445, 588, 658
PleI	GAGTC	1 cut(s)	625
PmaCI	CACGTG	1 cut(s)	63
PmlI	CACGTG	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	625
Ppu21I	YACGTR	1 cut(s)	63
PspCI	CACGTG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	484, 899, 1056
PspPI	GGNCC	3 cut(s)	202, 898, 1054
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	4 cut(s)	102, 188, 333, 484
RsaNI	GTAC	4 cut(s)	101, 187, 332, 483
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	8 cut(s)	126, 525, 558, 582, 755, 914, 972, 1041
SatI	GCNGC	3 cut(s)	444, 587, 657
Sau3AI	GATC	1 cut(s)	829
Sau96I	GGNCC	3 cut(s)	202, 898, 1054
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	1 cut(s)	626
SfaNI	GCATC	4 cut(s)	33, 129, 331, 578
SinI	GGWCC	1 cut(s)	898
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	16, 581
SmoI	CTYRAG	2 cut(s)	16, 581
Sse9I	AATT	5 cut(s)	460, 510, 559, 790, 915
SsiI	CCGC	4 cut(s)	44, 158, 733, 943
SspI	AATATT	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	518, 533
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	213, 620
TasI	AATT	5 cut(s)	460, 510, 559, 790, 915
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	5 cut(s)	207, 264, 375, 409, 877
Tru1I	TTAA	8 cut(s)	126, 525, 558, 582, 755, 914, 972, 1041
Tru9I	TTAA	8 cut(s)	126, 525, 558, 582, 755, 914, 972, 1041
TscAI	CASTG	2 cut(s)	385, 929
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	3 cut(s)	443, 586, 656
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	8 cut(s)	199, 363, 418, 452, 635, 834, 881, 1044
TspGWI	ACGGA	3 cut(s)	204, 736, 787
TspRI	CASTG	2 cut(s)	385, 929
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.