Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004323

Physical Location & Seq

Genomic Coordinates Reverse (-)

3491821 .. 3493399

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCGTTATTGGTACCCATTTACTGAGGAAGCAGTTCAACAAATTAAGAAGGACAGAATAACCAGGCTTGTTGTCCTGCCTCTATATCCTCAGTTCTCTATCTCTACAACTGGATCAAGCGTTCGTGTGCTCCAGGATATTTTCAGGAAAGACGCCTACCTATCAAGGATGCCTGTTTCTATTATAAACTCATGGTATCAACGTGAAGGCTATATTAAGTCAATGGCCGACTTGATTTCCAAAGAACTAGAAAGTTTTTCTGAGCCTGCAGAGGTCATGATATTCTTCAGTGCCCACGGAGTGCCGCTCAGTTATGTGGAGGATGCTGGAGATCCTTACAAAGATCAAATGGAAGAGTGCATCTTCTTAATAATGAAAGAGCTGAAATCTCGAGGAATCAACAATGAACATACTCTTGCTTACCAGAGCCGAGTTGGTCCTGTGCAATGGCTAAAGCCCTACACTGATGAAGTTCTTGTTGAGCTTGGCCAGAAAGGCGTGAAAAGTCTCCTAGCTGTTCCAGTCAGCTTTGTTAGCGAGCACATAGAGACTCTTGAAGAAATTGATATGGAGTACAGGGAATTGGCCCTCGAATCTGGCATTGAGAATTGGGGTCGAGTCCCTGCCCTTGGTTGCACTCCTTCGTTTATAACAGACCTCGCAGATGCCGTGATAGAAGCCGTACCACTTGCAACAGCTATGTCAACCCCACAAACTACCTCAGAAGTAGCCGATCACGACCCTGTGAGATACGCTATCAAGATGTTCTTTGGTTCCTTTATGGCTTTCATTTTGTTCTTTTCTCCAATGATAATGGCATTCAGGAACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Ferrochelatase

Protein Analysis

278

Amino Acids

31.56

Weight (kDa)

4.87

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferrochelatase	PF00762	1 - 226	1.9e-75	Ferrochelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26030 AT5G26030
fragaria_vesca	FvH4_2g32120 FvH4_2g32120
malus_domestica	MD08G1044400.v1.1 MD15G1061700.v1.1
prunus_persica	Prupe.1G414400_v2.0.a1
pyrus_communis	pycom08g03580 pycom15g05760
rosa_chinensis	RchiOBHm_Chr6g0272541 RchiOBHm_Chr6g0310621
rosa_laevigata	RLG00000010472 RLG00000013668
rosa_multiflora	Rmu_sc0003080.1_g000019 Rmu_sc0005386.1_g000002 Rmu_sc0016392.1_g000002 Rmu_sc0033505.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158420 Rroxscaffold_7G00196170
rosa_rugosa	Rorug06G0069800 Rorug06G0381500 Rorug06G0381600
rosa_samantha	Rh6AG186200 Rh6AG495500 Rh6BG189300 Rh6BG505000 Rh6CG187100 Rh6CG510600 Rh6DG178800 Rh6DG496400
rosa_wichuraiana	Rw6G016040 Rw6G043090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	185, 650
Acc65I	GGTACC	1 cut(s)	12
AccB1I	GGYRCC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	307
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	2 cut(s)	121, 326
AcoI	YGGCCR	2 cut(s)	225, 487
AcuI	CTGAAG	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	153
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	3 cut(s)	14, 575, 684
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	2 cut(s)	38, 557
AjnI	CCWGG	2 cut(s)	62, 132
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	5 cut(s)	382, 484, 515, 528, 698
AluI	AGCT	5 cut(s)	382, 484, 515, 528, 698
Alw21I	GWGCWC	2 cut(s)	132, 543
Alw26I	GTCTC	2 cut(s)	512, 542
AlwI	GGATC	2 cut(s)	121, 326
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	3 cut(s)	225, 487, 585
Asp700I	GAANNNNTTC	1 cut(s)	33
Asp718I	GGTACC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	437, 586
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	132, 543
BceAI	ACGGC	2 cut(s)	653, 665
BciT130I	CCWGG	2 cut(s)	64, 134
BcoDI	GTCTC	2 cut(s)	512, 542
BfaI	CTAG	2 cut(s)	248, 512
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	495
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	2 cut(s)	64, 134
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	2 cut(s)	437, 586
BmiI	GGNNCC	2 cut(s)	14, 775
BmrFI	CCNGG	2 cut(s)	64, 134
BmsI	GCATC	4 cut(s)	159, 313, 369, 655
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	2 cut(s)	116, 348
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	295, 628
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse1I	ACTGG	2 cut(s)	115, 521
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	64, 134
BseDI	CCNNGG	2 cut(s)	295, 628
BseGI	GGATG	2 cut(s)	174, 328
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	5 cut(s)	15, 104, 252, 322, 735
BseNI	ACTGG	2 cut(s)	115, 521
BseSI	GKGCMC	1 cut(s)	295
BshFI	GGCC	3 cut(s)	227, 489, 587
BshNI	GGYRCC	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	132, 543
BsiHKCI	CYCGRG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	2 cut(s)	512, 542
BsmFI	GGGAC	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	3 cut(s)	227, 489, 587
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	3 cut(s)	132, 295, 543
Bsp143I	GATC	4 cut(s)	113, 331, 343, 733
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	3 cut(s)	227, 489, 587
BspCNI	CTCAG	5 cut(s)	16, 103, 253, 321, 734
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	14, 775
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	2 cut(s)	121, 326
BspT107I	GGYRCC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	115, 521
BssECI	CCNNGG	2 cut(s)	295, 628
BssMI	GATC	4 cut(s)	113, 331, 343, 733
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	64, 134
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	267, 539
BstDEI	CTNAG	5 cut(s)	24, 90, 261, 308, 721
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	2 cut(s)	174, 328
BstKTI	GATC	4 cut(s)	116, 334, 346, 736
BstMAI	GTCTC	2 cut(s)	512, 542
BstMBI	GATC	4 cut(s)	113, 331, 343, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	495, 534
BstNI	CCWGG	2 cut(s)	64, 134
BstSCI	CCNGG	2 cut(s)	62, 132
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	227, 489, 587
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	174, 328
BtsIMutI	CAGTG	2 cut(s)	295, 462
Cac8I	GCNNGC	2 cut(s)	267, 539
CciI	TCATGA	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	437, 586
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	13, 574, 683
CviAII	CATG	2 cut(s)	192, 277
CviQI	GTAC	3 cut(s)	13, 574, 683
DdeI	CTNAG	5 cut(s)	24, 90, 261, 308, 721
DpnI	GATC	4 cut(s)	115, 333, 345, 735
DpnII	GATC	4 cut(s)	113, 331, 343, 733
DraIII	CACNNNGTG	1 cut(s)	301
EaeI	YGGCCR	2 cut(s)	225, 487
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	62, 132
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	2 cut(s)	195, 280
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	2 cut(s)	191, 276
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	2 cut(s)	181, 335
Fsp4HI	GCNGC	1 cut(s)	305
FspBI	CTAG	2 cut(s)	248, 512
GluI	GCNGC	1 cut(s)	305
GsuI	CTGGAG	2 cut(s)	116, 348
HaeIII	GGCC	3 cut(s)	227, 489, 587
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	195, 280
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HinfI	GANTC	4 cut(s)	396, 550, 593, 618
Hpy166II	GTNNAC	1 cut(s)	705
Hpy188I	TCNGA	2 cut(s)	262, 724
Hpy188III	TCNNGA	7 cut(s)	145, 277, 390, 554, 737, 760, 823
Hpy8I	GTNNAC	1 cut(s)	705
HpyAV	CCTTC	3 cut(s)	43, 200, 651
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	5 cut(s)	269, 360, 445, 636, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	495, 534
HpyF3I	CTNAG	5 cut(s)	24, 90, 261, 308, 721
HpySE526I	ACGT	1 cut(s)	202
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	195, 280
KpnI	GGTACC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	113, 331, 343, 733
LmnI	GCTCC	1 cut(s)	135
LweI	GCATC	4 cut(s)	159, 313, 369, 655
MaeI	CTAG	2 cut(s)	248, 512
MaeII	ACGT	1 cut(s)	202
MalI	GATC	4 cut(s)	115, 333, 345, 735
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	4 cut(s)	113, 331, 343, 733
MboII	GAAGA	4 cut(s)	277, 355, 365, 569
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	3 cut(s)	132, 295, 543
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	42, 561, 581, 607
MluNI	TGGCCA	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	544, 627
MnlI	CCTC	9 cut(s)	19, 90, 99, 265, 313, 386, 599, 668, 730
Mox20I	TGGCCA	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	3 cut(s)	45, 216, 368
Msp20I	TGGCCA	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	64, 134
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	64, 134
MwoI	GCNNNNNNNGC	2 cut(s)	495, 534
NdeII	GATC	4 cut(s)	113, 331, 343, 733
NlaIII	CATG	2 cut(s)	195, 280
NlaIV	GGNNCC	2 cut(s)	14, 775
NmeAIII	GCCGAG	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	390
PagI	TCATGA	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	396, 593
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	2 cut(s)	544, 626
PpsI	GAGTC	2 cut(s)	544, 626
PsiI	TTATAA	2 cut(s)	185, 650
Psp6I	CCWGG	2 cut(s)	62, 132
PspGI	CCWGG	2 cut(s)	62, 132
PspN4I	GGNNCC	2 cut(s)	14, 775
PspPI	GGNCC	2 cut(s)	437, 586
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	3 cut(s)	14, 575, 684
RsaNI	GTAC	3 cut(s)	13, 574, 683
SaqAI	TTAA	3 cut(s)	45, 216, 368
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	4 cut(s)	113, 331, 343, 733
Sau96I	GGNCC	2 cut(s)	437, 586
SchI	GAGTC	2 cut(s)	544, 627
ScrFI	CCNGG	2 cut(s)	64, 134
SduI	GDGCHC	3 cut(s)	132, 295, 543
SfaNI	GCATC	4 cut(s)	159, 313, 369, 655
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	4 cut(s)	42, 561, 581, 607
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	2 cut(s)	248, 512
StyD4I	CCNGG	2 cut(s)	62, 132
StyI	CCWWGG	1 cut(s)	628
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	391, 591, 616
TasI	AATT	4 cut(s)	42, 561, 581, 607
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	396, 593
Tru1I	TTAA	3 cut(s)	45, 216, 368
Tru9I	TTAA	3 cut(s)	45, 216, 368
TscAI	CASTG	2 cut(s)	295, 469
TspDTI	ATGAA	4 cut(s)	389, 420, 483, 778
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	295, 469
VpaK11BI	GGWCC	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XhoI	CTCGAG	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	2 cut(s)	248, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.