Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008582

Physical Location & Seq

Genomic Coordinates Forward (+)

3630134 .. 3635468

Gene Structure 5335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGATTCAAAGGACGATAAGGTTTCATAAGTTGGTTCGATCTCTTGGAGTTGCTTCTTCATTATCTCCGTCGTCCAAGAATCTTGGAGTTTACCGTTGCTTCGGAACTGTAGCTTCATCGAATGCAGAACAAGCATGTGATCCATTTGAATACAGCTATGATCTTGATAAGCATGAGTATGCTGATGTGGATTGGGATAATCTCGGGTTTGGTTTAGTGCAAACTGATTACATGTACGTTATGAAATGTTCCAACGACGGGAAATTTGAACAAGGCCAACTCAGTCGTTACGGAAATATTGAACTTAACCCTGCTGCTGGAGTTTTAAATTATGGACAGGCAATATATGAAGGCACAAAAGCACACAGGAATAAAGATGGGAATCTCCTTCTCTTTCGTCCAGACCAGAACGCAATGCGGATGAAGATTGGCGCAGAAAGAATGTGCATGCCCTCACTGCCGGTTGATCAATTCATTGATGCCGTGAAGCAAACTGCTCAAGCAAACAAGCGTTGGGTTCCTCCTCCAGGCAAAGGGTCTTTGTATGTTAGGCCTCTACTTCTAGGAAGTGGCCCCATATTAGGCTTGGCACCGTCACCTGAGTACACATTCCTTATATATGCTTCCCCGGTCAGAAATTATTTCAAGGAGGGCTCTGCACCCTTGAACATATATGTCGAGGAGGAGTATGATCGTGCCTCTCGTGGCGGAGCTGGAGGTGTCAAAACCATTACCAATTATGCCCCGGTATTGAAGGCACTAACCAGAGCAAAAAGCAAGGGATTTTCGGATGTTCTATATCTCGATTCAGTACATAACAAAAATCTGGAGGAGGTATCTTCTTGCAACATTTTCATTCTGAAAGGCAACGTGATTTCAACTCCTCCCACATCGGGGACTATTCTTTCCGGAGTTACTCGAAGAAGTATTATTGAAATTGCTCGTGATCATGGTTACCAGGTTGAGGAACGAGTTATTCCAGTGGAGGAATTGAGTGAAGTCGATGAAGTGTTCTGCACTGGAACTGCTGTTGGTGTTGCTCCTGTGGGCAGCATTACATATCAAGGCAAAAGGATGGAGTACAAAACGGGAGCTGGGACTGCATGTCCACAACTTTACTCAACCCTAGTAGGAATTCAAACGGGACAGATTGAGGATAAGAAAGGCTGGATTGTGGAAATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

396

Amino Acids

43.43

Weight (kDa)

6.56

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_4	PF01063	115 - 352	7.1e-35	Amino-transferase class IV

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10070 AT1G10070 AT1G10070
fragaria_vesca	FvH4_2g32430
malus_domestica	MD08G1075600.v1.1 MD15G1063100.v1.1
prunus_persica	Prupe.1G417100_v2.0.a1
pyrus_communis	pycom08g06240 pycom15g05970
rosa_chinensis	RchiOBHm_Chr3g0458081 RchiOBHm_Chr6g0310241
rosa_laevigata	RLG00000010496
rosa_multiflora	Rmu_sc0002348.1_g000024 Rmu_sc0008163.1_g000019
rosa_roxburghii	Rroxscaffold_7G00158710
rosa_rugosa	Rorug06G0378400
rosa_samantha	Rh3BG088200 Rh3CG088800 Rh3DG089100 Rh6AG492600 Rh6DG493400
rosa_wichuraiana	Rw3G007260 Rw6G042870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccIII	TCCGGA	1 cut(s)	908
AciI	CCGC	2 cut(s)	418, 708
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	263, 1134
AfaI	GTAC	4 cut(s)	236, 605, 813, 1082
AfiI	CCNNNNNNNGG	8 cut(s)	258, 317, 527, 533, 581, 893, 894, 964
AflIII	ACRYGT	1 cut(s)	231
AhdI	GACNNNNNGTC	1 cut(s)	1104
AjnI	CCWGG	2 cut(s)	526, 957
AluBI	AGCT	4 cut(s)	113, 156, 713, 1094
AluI	AGCT	4 cut(s)	113, 156, 713, 1094
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	203
Aor13HI	TCCGGA	1 cut(s)	908
AoxI	GGCC	3 cut(s)	274, 551, 571
ApeKI	GCWGC	2 cut(s)	314, 1050
ApoI	RAATTY	2 cut(s)	263, 1134
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	2 cut(s)	629, 746
AsuHPI	GGTGA	1 cut(s)	588
AvaI	CYCGRG	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	656
BauI	CACGAG	2 cut(s)	702, 942
BbvI	GCAGC	2 cut(s)	301, 1062
BccI	CCATC	2 cut(s)	371, 1069
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	2 cut(s)	528, 959
BclI	TGATCA	2 cut(s)	466, 946
BcnI	CCSGG	2 cut(s)	629, 746
BfaI	CTAG	2 cut(s)	563, 1127
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	2 cut(s)	315, 1051
BlsI	GCNGC	2 cut(s)	316, 1052
Bme1390I	CCNGG	4 cut(s)	528, 629, 746, 959
BmeRI	GACNNNNNGTC	1 cut(s)	1104
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	3 cut(s)	519, 574, 591
BmrFI	CCNGG	4 cut(s)	528, 629, 746, 959
BmsI	GCATC	1 cut(s)	469
BpmI	CTGGAG	4 cut(s)	339, 510, 735, 848
BpuEI	CTTGAG	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	629, 746
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	627, 744
BsaWI	WCCGGW	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	8 cut(s)	258, 317, 527, 533, 581, 893, 894, 964
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	2 cut(s)	980, 1024
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	381
BseAI	TCCGGA	1 cut(s)	908
BseBI	CCWGG	2 cut(s)	528, 959
BseDI	CCNNGG	2 cut(s)	627, 744
BseGI	GGATG	3 cut(s)	426, 796, 1080
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	8 cut(s)	258, 317, 527, 533, 581, 893, 894, 964
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	295, 591
BseNI	ACTGG	2 cut(s)	980, 1024
BseRI	GAGGAG	5 cut(s)	513, 695, 698, 845, 873
BseXI	GCAGC	2 cut(s)	301, 1062
BseYI	CCCAGC	1 cut(s)	1094
BsgI	GTGCAG	2 cut(s)	642, 1000
BshFI	GGCC	3 cut(s)	276, 553, 573
BshNI	GGYRCC	1 cut(s)	589
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	461, 629, 746, 909
BslFI	GGGAC	3 cut(s)	910, 1111, 1158
BslI	CCNNNNNNNGG	8 cut(s)	258, 317, 527, 533, 581, 893, 894, 964
BsmFI	GGGAC	3 cut(s)	910, 1111, 1158
BsmI	GAATGC	1 cut(s)	127
BsnI	GGCC	3 cut(s)	276, 553, 573
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	656
Bsp13I	TCCGGA	1 cut(s)	908
Bsp143I	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
BspACI	CCGC	2 cut(s)	418, 708
BspANI	GGCC	3 cut(s)	276, 553, 573
BspCNI	CTCAG	2 cut(s)	294, 592
BspEI	TCCGGA	1 cut(s)	908
BspLI	GGNNCC	3 cut(s)	519, 574, 591
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	980, 1024
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	627, 744
BssMI	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
BssSI	CACGAG	2 cut(s)	702, 942
Bst2BI	CACGAG	2 cut(s)	702, 942
Bst2UI	CCWGG	2 cut(s)	528, 959
Bst4CI	ACNGT	3 cut(s)	95, 109, 594
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	281, 600
BstEII	GGTNACC	1 cut(s)	953
BstENI	CCTNNNNNAGG	1 cut(s)	525
BstF5I	GGATG	3 cut(s)	426, 796, 1080
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	6 cut(s)	41, 142, 163, 469, 694, 949
BstMBI	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 457, 1100
BstNI	CCWGG	2 cut(s)	528, 959
BstNSI	RCATGY	4 cut(s)	138, 235, 451, 1107
BstPI	GGTNACC	1 cut(s)	953
BstSCI	CCNGG	4 cut(s)	526, 627, 744, 957
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	301, 1062
BsuRI	GGCC	3 cut(s)	276, 553, 573
BtsCI	GGATG	3 cut(s)	426, 796, 1080
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	3 cut(s)	455, 987, 1017
Cac8I	GCNNGC	1 cut(s)	449
CfoI	GCGC	1 cut(s)	434
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	957
Csp6I	GTAC	4 cut(s)	235, 604, 812, 1081
CviAII	CATG	6 cut(s)	135, 173, 232, 448, 950, 1104
CviQI	GTAC	4 cut(s)	235, 604, 812, 1081
DdeI	CTNAG	2 cut(s)	281, 600
DpnI	GATC	6 cut(s)	40, 141, 162, 468, 693, 948
DpnII	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
DraI	TTTAAA	1 cut(s)	327
DriI	GACNNNNNGTC	1 cut(s)	1104
Eam1105I	GACNNNNNGTC	1 cut(s)	1104
EciI	GGCGGA	1 cut(s)	723
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	953
EcoNI	CCTNNNNNAGG	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	1134
EcoRII	CCWGG	2 cut(s)	526, 957
EcoT38I	GRGCYC	1 cut(s)	656
FaeI	CATG	6 cut(s)	138, 176, 235, 451, 953, 1107
FaqI	GGGAC	3 cut(s)	910, 1111, 1158
FatI	CATG	6 cut(s)	134, 172, 231, 447, 949, 1103
FbaI	TGATCA	2 cut(s)	466, 946
Fnu4HI	GCNGC	2 cut(s)	315, 1051
FokI	GGATG	3 cut(s)	433, 803, 1087
FriOI	GRGCYC	1 cut(s)	656
Fsp4HI	GCNGC	2 cut(s)	315, 1051
FspBI	CTAG	2 cut(s)	563, 1127
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	2 cut(s)	315, 1051
GsaI	CCCAGC	1 cut(s)	1098
GsuI	CTGGAG	4 cut(s)	339, 510, 735, 848
HaeIII	GGCC	3 cut(s)	276, 553, 573
HapII	CCGG	4 cut(s)	461, 629, 746, 909
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	6 cut(s)	138, 176, 235, 451, 953, 1107
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	4 cut(s)	4, 79, 382, 806
HpaII	CCGG	4 cut(s)	461, 629, 746, 909
HphI	GGTGA	1 cut(s)	588
Hpy166II	GTNNAC	3 cut(s)	91, 606, 1109
Hpy188I	TCNGA	4 cut(s)	104, 635, 790, 861
Hpy188III	TCNNGA	6 cut(s)	164, 401, 803, 827, 909, 944
Hpy8I	GTNNAC	3 cut(s)	91, 606, 1109
Hpy99I	CGWCG	2 cut(s)	73, 260
HpyAV	CCTTC	3 cut(s)	344, 398, 748
HpyCH4III	ACNGT	3 cut(s)	95, 109, 594
HpyCH4IV	ACGT	2 cut(s)	237, 870
HpyCH4V	TGCA	7 cut(s)	125, 220, 447, 659, 846, 1017, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 457, 1100
HpyF3I	CTNAG	2 cut(s)	281, 600
HpySE526I	ACGT	2 cut(s)	237, 870
Hsp92II	CATG	6 cut(s)	138, 176, 235, 451, 953, 1107
HspAI	GCGC	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	908
Ksp22I	TGATCA	2 cut(s)	466, 946
Kzo9I	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
LmnI	GCTCC	3 cut(s)	710, 1045, 1091
Lsp1109I	GCAGC	2 cut(s)	301, 1062
LweI	GCATC	1 cut(s)	469
MabI	ACCWGGT	1 cut(s)	957
MaeI	CTAG	2 cut(s)	563, 1127
MaeII	ACGT	2 cut(s)	237, 870
MaeIII	GTNAC	4 cut(s)	287, 594, 913, 953
MalI	GATC	6 cut(s)	40, 141, 162, 468, 693, 948
MboI	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
MboII	GAAGA	4 cut(s)	48, 436, 831, 933
MhlI	GDGCHC	1 cut(s)	656
MluCI	AATT	9 cut(s)	263, 328, 470, 637, 736, 936, 989, 1134, 1179
MmeI	TCCRAC	1 cut(s)	276
MroI	TCCGGA	1 cut(s)	908
MseI	TTAA	2 cut(s)	306, 326
MslI	CAYNNNNRTG	1 cut(s)	177
MspI	CCGG	4 cut(s)	461, 629, 746, 909
MspR9I	CCNGG	4 cut(s)	528, 629, 746, 959
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	528, 959
MwoI	GCNNNNNNNGC	3 cut(s)	131, 457, 1100
NciI	CCSGG	2 cut(s)	629, 746
NdeII	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
NlaIII	CATG	6 cut(s)	138, 176, 235, 451, 953, 1107
NlaIV	GGNNCC	3 cut(s)	519, 574, 591
NmuCI	GTSAC	1 cut(s)	594
NspI	RCATGY	4 cut(s)	138, 235, 451, 1107
PaeI	GCATGC	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	700
PctI	GAATGC	1 cut(s)	127
PfeI	GAWTC	4 cut(s)	4, 79, 382, 806
PkrI	GCNGC	2 cut(s)	316, 1052
PscI	ACATGT	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	526, 957
PspEI	GGTNACC	1 cut(s)	953
PspFI	CCCAGC	1 cut(s)	1094
PspGI	CCWGG	2 cut(s)	526, 957
PspN4I	GGNNCC	3 cut(s)	519, 574, 591
PspPI	GGNCC	1 cut(s)	572
RsaI	GTAC	4 cut(s)	236, 605, 813, 1082
RsaNI	GTAC	4 cut(s)	235, 604, 812, 1081
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	306, 326
SatI	GCNGC	2 cut(s)	315, 1051
Sau3AI	GATC	6 cut(s)	38, 139, 160, 466, 691, 946
Sau96I	GGNCC	1 cut(s)	572
ScrFI	CCNGG	4 cut(s)	528, 629, 746, 959
SduI	GDGCHC	1 cut(s)	656
SexAI	ACCWGGT	1 cut(s)	957
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
SphI	GCATGC	1 cut(s)	451
Sse9I	AATT	9 cut(s)	263, 328, 470, 637, 736, 936, 989, 1134, 1179
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	2 cut(s)	418, 708
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	2 cut(s)	563, 1127
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	4 cut(s)	526, 627, 744, 957
TaaI	ACNGT	3 cut(s)	95, 109, 594
TaiI	ACGT	2 cut(s)	240, 873
TaqI	TCGA	6 cut(s)	37, 119, 678, 804, 919, 1002
TasI	AATT	9 cut(s)	263, 328, 470, 637, 736, 936, 989, 1134, 1179
TatI	WGTACW	3 cut(s)	603, 811, 1080
TfiI	GAWTC	4 cut(s)	4, 79, 382, 806
Tru1I	TTAA	2 cut(s)	306, 326
Tru9I	TTAA	2 cut(s)	306, 326
TscAI	CASTG	3 cut(s)	462, 987, 1024
TseFI	GTSAC	1 cut(s)	594
TseI	GCWGC	2 cut(s)	314, 1050
Tsp45I	GTSAC	1 cut(s)	594
TspDTI	ATGAA	9 cut(s)	14, 48, 105, 257, 363, 437, 463, 844, 1020
TspGWI	ACGGA	2 cut(s)	57, 306
TspRI	CASTG	3 cut(s)	462, 987, 1024
XagI	CCTNNNNNAGG	1 cut(s)	525
XapI	RAATTY	2 cut(s)	263, 1134
XceI	RCATGY	4 cut(s)	138, 235, 451, 1107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XspI	CTAG	2 cut(s)	563, 1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.