Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

3955486 .. 3957944

Gene Structure 2459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTGGAGCACTCTCTTGGTCCCAACGGAGGTCTTGTATATTGCATGGATTATCTAGGGAAGAATATTGACTGGTTGGAGGCGAAGTTGAAGCCGCTTCTGAAAGATCATTATATTCTCTTTGATCTCCCCGGCCAAGTGGAACTATTCTTTCTTCACTCCAACGCCAAGAATGTTATCATGAAGCTCGTAAAGAAGTTAAACCTCAGGTTGACCGCTGTGCATTTGGTTGATGCCCATCTTTGCAGTGATCCTGGAAAGTATGTTAGTGCATTGATTCTCTCTTTATCAACCATGCTTCATATGGAACTCCCTCACATAAATGTCTTGTCTAAGATTGATCTAATAGAGAGTTACGGAAAGCTAGCTTTCAACCTTGATTTCTTCACAGATGTAGAGGATTTATCTTATCTTCAGTACAAGCTTGATCAGGATCCTCGTTCAGCTAAGTACAGAAAGCTTACTAAGGAGCTTTGTGAAGTAGTTGAAGATTACAGTCTTGTCAATTTTGCAACCTTAGATATCCAGGATAAAGAGAGTGTAGGGAATCTAGTTAAACTGATAGACAAGAGCAATGGGTACATTTTTGCTGGTATAGACGCGAGTGCAGTAGAATTCAGCAAGATTGCAGTCGCAGTGCAAGAGAAGTACATGAAGGATGACGAAACTTTTGACGACGACAATGAACAGCCAGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

234

Amino Acids

26.41

Weight (kDa)

4.92

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	1 - 193	4.1e-50	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	602
AciI	CCGC	2 cut(s)	95, 216
AclWI	GGATC	3 cut(s)	245, 428, 441
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	614
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	4 cut(s)	419, 452, 581, 650
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	91, 373, 488
AjnI	CCWGG	3 cut(s)	253, 525, 691
AluBI	AGCT	7 cut(s)	187, 364, 368, 424, 446, 460, 472
AluI	AGCT	7 cut(s)	187, 364, 368, 424, 446, 460, 472
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	3 cut(s)	245, 428, 441
AoxI	GGCC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	1 cut(s)	132
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	1 cut(s)	246
BciT130I	CCWGG	3 cut(s)	255, 527, 693
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	3 cut(s)	56, 365, 551
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	4 cut(s)	132, 255, 527, 693
Bme18I	GGWCC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	22, 435
BmrFI	CCNGG	4 cut(s)	132, 255, 527, 693
BmsI	GCATC	1 cut(s)	223
BmtI	GCTAGC	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	132
BsaBI	GATNNNNATC	2 cut(s)	237, 432
BsaJI	CCNNGG	1 cut(s)	130
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 71, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	77
Bse21I	CCTNAGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	580
Bse8I	GATNNNNATC	2 cut(s)	237, 432
BseBI	CCWGG	3 cut(s)	255, 527, 693
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	664
BseJI	GATNNNNATC	2 cut(s)	237, 432
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	580
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	602
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	690
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
BspACI	CCGC	2 cut(s)	95, 216
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	602
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	22, 435
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	3 cut(s)	245, 428, 441
BsrDI	GCAATG	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
Bst2UI	CCWGG	3 cut(s)	255, 527, 693
Bst4CI	ACNGT	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	5 cut(s)	206, 333, 447, 465, 517
BstF5I	GGATG	1 cut(s)	664
BstFNI	CGCG	1 cut(s)	602
BstKTI	GATC	6 cut(s)	109, 127, 253, 343, 430, 436
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
BstNI	CCWGG	3 cut(s)	255, 527, 693
BstSCI	CCNGG	4 cut(s)	130, 253, 525, 691
BstUI	CGCG	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	2 cut(s)	253, 642
BtsIMutI	CAGTG	2 cut(s)	253, 642
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	4 cut(s)	418, 451, 580, 649
CviAII	CATG	4 cut(s)	46, 181, 295, 652
CviQI	GTAC	4 cut(s)	418, 451, 580, 649
DdeI	CTNAG	5 cut(s)	206, 333, 447, 465, 517
DpnI	GATC	6 cut(s)	108, 126, 252, 342, 429, 435
DpnII	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
EaeI	YGGCCR	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	3 cut(s)	253, 525, 691
EcoRV	GATATC	1 cut(s)	523
FaeI	CATG	4 cut(s)	49, 184, 298, 655
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	4 cut(s)	45, 180, 294, 651
FauNDI	CATATG	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	3 cut(s)	56, 365, 551
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	49, 184, 298, 655
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HindIII	AAGCTT	2 cut(s)	422, 458
HinfI	GANTC	2 cut(s)	277, 547
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	181, 431
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	1 cut(s)	649
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4V	TGCA	8 cut(s)	45, 223, 246, 272, 512, 608, 629, 640
HpyF3I	CTNAG	5 cut(s)	206, 333, 447, 465, 517
Hsp92II	CATG	4 cut(s)	49, 184, 298, 655
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
LmnI	GCTCC	2 cut(s)	7, 469
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	3 cut(s)	56, 365, 551
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	6 cut(s)	108, 126, 252, 342, 429, 435
MboI	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
MboII	GAAGA	5 cut(s)	73, 146, 376, 404, 500
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	505, 614
MmeI	TCCRAC	2 cut(s)	57, 186
MnlI	CCTC	6 cut(s)	23, 73, 215, 324, 391, 447
MseI	TTAA	2 cut(s)	200, 555
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	4 cut(s)	132, 255, 527, 693
MvaI	CCWGG	3 cut(s)	255, 527, 693
MvnI	CGCG	1 cut(s)	602
NciI	CCSGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	49, 184, 298, 655
NlaIV	GGNNCC	2 cut(s)	22, 435
PagI	TCATGA	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	277, 547
PfoI	TCCNGGA	2 cut(s)	253, 525
PkrI	GCNGC	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	253, 525, 691
PspGI	CCWGG	3 cut(s)	253, 525, 691
PspN4I	GGNNCC	2 cut(s)	22, 435
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	4 cut(s)	419, 452, 581, 650
RsaNI	GTAC	4 cut(s)	418, 451, 580, 649
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	200, 555
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	6 cut(s)	106, 124, 250, 340, 427, 433
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	4 cut(s)	132, 255, 527, 693
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	223
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	2 cut(s)	505, 614
SsiI	CCGC	2 cut(s)	95, 216
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	3 cut(s)	56, 365, 551
StyD4I	CCNGG	4 cut(s)	130, 253, 525, 691
TaaI	ACNGT	1 cut(s)	497
TasI	AATT	2 cut(s)	505, 614
TatI	WGTACW	3 cut(s)	417, 450, 648
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	277, 547
Tru1I	TTAA	2 cut(s)	200, 555
Tru9I	TTAA	2 cut(s)	200, 555
TscAI	CASTG	2 cut(s)	253, 642
TspDTI	ATGAA	4 cut(s)	197, 290, 668, 699
TspGWI	ACGGA	2 cut(s)	42, 372
TspRI	CASTG	2 cut(s)	253, 642
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XspI	CTAG	3 cut(s)	56, 365, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.