Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007062

Physical Location & Seq

Genomic Coordinates Reverse (-)

4124831 .. 4128002

Gene Structure 3172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTTCAACTTCACACCATCTCACTTTTCTCGTCGAATTCCTTCACTTTCTCACCCGCCGTCGCCTTCCGCACTCCCGCAGCTAAAACTTTGTCCTCCGCCGCCGCCGCGCTTCCCTTCATTCGTTTCCCAAATTACCGATCCGCCCGCCCTCCCCGGCGCTGCTCTGTGGGTAAGTGTGAAGCACTGAAAGTTGAAGCAATGGCGGCGGAAGACGGTCAGGATCTTCGCCTTGCTAGAATTTCATCTGCTATCAGAGTCATCCGGGACTTCCCCAAGCCAGGGATTTTGTTCCAAGATATTACCACATTGCTCCTGGATACCAAGGCTTTCAAGGACACTATTGATTTGTTTGTTGAGAGGTACAAAGACAAAGAAATCTCTGTTGTTGCAGGTGTTGAAGCTAGAGGTTTTATATTTGGCCCTCCTATTGCCTTGGCCATTGGGGCAAAATTTGTTCCCTTGAGAAAGCCAAAGAAGTTGCCTGGGAAGGTTATTTCTGAAGAGTACTCTTTGGAGTATGGAACAGATAAAATAGAGATGCACGTGGGAGCTGTAGAAGCCGGTGAACGTGCCTTGATCATAGATGACCTCATTGCAACCGGGGGAACCTTGGGTGCTGCCATCAGGCTTCTTGAGCGTGTAGGGGTGCATGTCGTTGAGTGTGCCTGTGTAATTGAATTGCCAGAACTAAAGGGTCGGGAACGATTGGGGGAGAAACCATTGTTTGTTCTAGTTAGCGGAGAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003999 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006167 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009308 GO:0009507 GO:0009536 GO:0009690 GO:0009987 GO:0010817 GO:0016740 GO:0016757 GO:0016763 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032261 GO:0034641 GO:0034654 GO:0034754 GO:0042445 GO:0043094 GO:0043101 GO:0043173 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044209 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046390 GO:0046483 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

Pribosyltran

Protein Analysis

251

Amino Acids

27.19

Weight (kDa)

8.86

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	110 - 235	1.8e-17	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27450 AT1G27450 AT1G27450 AT1G27450
fragaria_vesca	FvH4_2g33240 FvH4_2g33240 FvH4_2g33240
malus_domestica	MD08G1086300.v1.1 MD08G1086400.v1.1 MD15G1071300.v1.1
prunus_persica	Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1 Prupe.1G424200_v2.0.a1
pyrus_communis	pycom08g07090 pycom15g06710
rosa_chinensis	RchiOBHm_Chr6g0309401
rosa_laevigata	RLG00000010569
rosa_multiflora	Rmu_sc0012466.1_g000005 Rmu_sc0017306.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159430
rosa_rugosa	Rorug06G0371900
rosa_samantha	Rh6BG494200 Rh6CG499200 Rh6DG485400
rosa_wichuraiana	Rw6G042240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	383
AccII	CGCG	1 cut(s)	110
AclWI	GGATC	2 cut(s)	135, 231
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	3 cut(s)	37, 240, 452
AcuI	CTGAAG	1 cut(s)	522
AcvI	CACGTG	1 cut(s)	547
AfaI	GTAC	2 cut(s)	365, 509
AfiI	CCNNNNNNNGG	2 cut(s)	281, 282
AgsI	TTSAA	5 cut(s)	8, 197, 334, 401, 680
AjnI	CCWGG	3 cut(s)	280, 315, 484
AluBI	AGCT	3 cut(s)	83, 404, 554
AluI	AGCT	3 cut(s)	83, 404, 554
AlwI	GGATC	2 cut(s)	135, 231
AoxI	GGCC	2 cut(s)	421, 438
ApeKI	GCWGC	3 cut(s)	80, 162, 620
ApoI	RAATTY	3 cut(s)	37, 240, 452
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	112, 162
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	3 cut(s)	157, 266, 604
AsuHPI	GGTGA	2 cut(s)	45, 578
BalI	TGGCCA	1 cut(s)	440
BbrPI	CACGTG	1 cut(s)	547
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	92, 149, 607
BccI	CCATC	2 cut(s)	26, 632
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	3 cut(s)	282, 317, 486
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	3 cut(s)	157, 266, 604
BfaI	CTAG	3 cut(s)	237, 405, 734
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	383
BfuI	GTATCC	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	7 cut(s)	81, 102, 105, 108, 163, 207, 621
BlsI	GCNGC	7 cut(s)	82, 103, 106, 109, 164, 208, 622
BmcAI	AGTACT	1 cut(s)	509
Bme1390I	CCNGG	6 cut(s)	157, 266, 282, 317, 486, 604
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	6 cut(s)	157, 266, 282, 317, 486, 604
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	484, 656
BpuMI	CCSGG	3 cut(s)	157, 266, 604
BsaAI	YACGTR	1 cut(s)	547
BsaJI	CCNNGG	7 cut(s)	155, 281, 324, 435, 485, 603, 612
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 282
Bse118I	RCCGGY	1 cut(s)	563
Bse3DI	GCAATG	3 cut(s)	207, 308, 594
BseBI	CCWGG	3 cut(s)	282, 317, 486
BseDI	CCNNGG	7 cut(s)	155, 281, 324, 435, 485, 603, 612
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	281, 282
BseMI	GCAATG	3 cut(s)	207, 308, 594
BseXI	GCAGC	3 cut(s)	92, 149, 607
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	423, 440
BsiSI	CCGG	4 cut(s)	157, 265, 564, 603
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	281, 282
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	423, 440
Bsp143I	GATC	3 cut(s)	140, 223, 579
BspANI	GGCC	2 cut(s)	423, 440
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	610
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	135, 231
BsrDI	GCAATG	3 cut(s)	207, 308, 594
BsrFI	RCCGGY	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	7 cut(s)	155, 281, 324, 435, 485, 603, 612
BssMI	GATC	3 cut(s)	140, 223, 579
BssT1I	CCWWGG	3 cut(s)	324, 435, 612
Bst2UI	CCWGG	3 cut(s)	282, 317, 486
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	547
BstC8I	GCNNGC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	112, 162
BstKTI	GATC	3 cut(s)	143, 226, 582
BstMBI	GATC	3 cut(s)	140, 223, 579
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 206, 446, 560, 637
BstNI	CCWGG	3 cut(s)	282, 317, 486
BstNSI	RCATGY	1 cut(s)	656
BstSCI	CCNGG	6 cut(s)	155, 264, 280, 315, 484, 602
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	3 cut(s)	92, 149, 607
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	423, 440
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	185
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	148
CfoI	GCGC	2 cut(s)	112, 162
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	364, 508
CviAII	CATG	2 cut(s)	653, 750
CviQI	GTAC	2 cut(s)	364, 508
DpnI	GATC	3 cut(s)	142, 225, 581
DpnII	GATC	3 cut(s)	140, 223, 579
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	3 cut(s)	88, 133, 224
Eco130I	CCWWGG	3 cut(s)	324, 435, 612
Eco57I	CTGAAG	1 cut(s)	522
Eco72I	CACGTG	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	280, 315, 484
EcoT14I	CCWWGG	3 cut(s)	324, 435, 612
ErhI	CCWWGG	3 cut(s)	324, 435, 612
FaeI	CATG	2 cut(s)	656, 753
FaiI	YATR	5 cut(s)	416, 522, 584, 654, 751
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	652, 749
FauI	CCCGC	3 cut(s)	64, 85, 155
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	7 cut(s)	81, 102, 105, 108, 163, 207, 621
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	7 cut(s)	81, 102, 105, 108, 163, 207, 621
FspBI	CTAG	3 cut(s)	237, 405, 734
GlaI	GCGC	2 cut(s)	111, 161
GluI	GCNGC	7 cut(s)	81, 102, 105, 108, 163, 207, 621
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	423, 440
HapII	CCGG	4 cut(s)	157, 265, 564, 603
HhaI	GCGC	2 cut(s)	112, 162
Hin1II	CATG	2 cut(s)	656, 753
Hin6I	GCGC	2 cut(s)	110, 160
HinP1I	GCGC	2 cut(s)	110, 160
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	4 cut(s)	157, 265, 564, 603
HphI	GGTGA	2 cut(s)	45, 578
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	2 cut(s)	257, 502
Hpy188III	TCNNGA	3 cut(s)	221, 635, 701
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	2 cut(s)	37, 65
HpyAV	CCTTC	4 cut(s)	52, 76, 127, 484
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	2 cut(s)	546, 571
HpyCH4V	TGCA	4 cut(s)	392, 544, 599, 652
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 206, 446, 560, 637
HpySE526I	ACGT	2 cut(s)	546, 571
Hsp92II	CATG	2 cut(s)	656, 753
HspAI	GCGC	2 cut(s)	110, 160
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	140, 223, 579
LmnI	GCTCC	2 cut(s)	318, 551
Lsp1109I	GCAGC	3 cut(s)	92, 149, 607
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	3 cut(s)	237, 405, 734
MaeII	ACGT	2 cut(s)	546, 571
MalI	GATC	3 cut(s)	142, 225, 581
MboI	GATC	3 cut(s)	140, 223, 579
MboII	GAAGA	3 cut(s)	218, 224, 515
MflI	RGATCY	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	6 cut(s)	37, 133, 240, 452, 675, 680
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	6 cut(s)	106, 162, 354, 401, 435, 602
Mox20I	TGGCCA	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	4 cut(s)	157, 265, 564, 603
MspR9I	CCNGG	6 cut(s)	157, 266, 282, 317, 486, 604
MvaI	CCWGG	3 cut(s)	282, 317, 486
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	5 cut(s)	107, 206, 446, 560, 637
NciI	CCSGG	3 cut(s)	157, 266, 604
NdeII	GATC	3 cut(s)	140, 223, 579
NlaIII	CATG	2 cut(s)	656, 753
NlaIV	GGNNCC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	656
PaqCI	CACCTGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	41
PfoI	TCCNGGA	2 cut(s)	264, 315
PkrI	GCNGC	7 cut(s)	82, 103, 106, 109, 164, 208, 622
PleI	GAGTC	1 cut(s)	266
PmaCI	CACGTG	1 cut(s)	547
PmlI	CACGTG	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	266
Ppu21I	YACGTR	1 cut(s)	547
Psp6I	CCWGG	3 cut(s)	280, 315, 484
PspCI	CACGTG	1 cut(s)	547
PspGI	CCWGG	3 cut(s)	280, 315, 484
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	365, 509
RsaNI	GTAC	2 cut(s)	364, 508
SatI	GCNGC	7 cut(s)	81, 102, 105, 108, 163, 207, 621
Sau3AI	GATC	3 cut(s)	140, 223, 579
Sau96I	GGNCC	1 cut(s)	422
ScaI	AGTACT	1 cut(s)	509
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	6 cut(s)	157, 266, 282, 317, 486, 604
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	463, 635
SmoI	CTYRAG	2 cut(s)	463, 635
Sse9I	AATT	6 cut(s)	37, 133, 240, 452, 675, 680
SspMI	CTAG	3 cut(s)	237, 405, 734
StyD4I	CCNGG	6 cut(s)	155, 264, 280, 315, 484, 602
StyI	CCWWGG	3 cut(s)	324, 435, 612
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	2 cut(s)	549, 574
TaqI	TCGA	1 cut(s)	35
TasI	AATT	6 cut(s)	37, 133, 240, 452, 675, 680
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	4 cut(s)	104, 107, 110, 209
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	3 cut(s)	80, 162, 620
TspDTI	ATGAA	2 cut(s)	109, 234
TspRI	CASTG	1 cut(s)	192
XapI	RAATTY	3 cut(s)	37, 240, 452
XceI	RCATGY	1 cut(s)	656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	3 cut(s)	237, 405, 734
ZrmI	AGTACT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.