Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010075

Physical Location & Seq

Genomic Coordinates Forward (+)

4306360 .. 4308106

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTGTTAATTTTACCTCCACAAATCCTCATCGAAATGTCGGATTCCGAGGGCACCGCCGTAGCAACACCGCAAGACCAAACCTCCGCCATGGAGCCCGAATCCGAACAGCAGAAGCACCACGACGCACCAGCTCACAAAGAGAAGCCCAGCGTCCACACCTCCTTCAGCATATGGCCGCCGACCCAGCGCACCCGCGACGCCGTCGTCAACCGCCTCATCGAGACCCTCACCACGCCCTCCCCTCTCTCCAAGCGCTACGGCACCATGGCTGCCGACGAGGCTTCCGACACCGCCCACCTCATCGAGGACGACGCCTTCGCCGCCGCCGGTGGCTCCGCCGCTACCGAGGAGGACGGGATTCAGATCCTGCAGGTTTACTCCAAGGAGATCAGCAAGCGCATGCTCGACAGCGTCAAGTCCAGGAACGCCGCTGCTTCCCCTGGTCAAAACGGCGCCGCGGAGCCCGAGACTGCGAGCTCTGCGGTGGACCCCACCGCTGCCGCCGCCAGTGAGGATGCTATGGCCAAAGATTTGCAGAAGTTCAAACTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0007049 GO:0007275 GO:0008150 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016363 GO:0019867 GO:0022622 GO:0031090 GO:0031965 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0034399 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0070013 GO:0071944 GO:0090696 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WPP

Protein Analysis

186

Amino Acids

19.67

Weight (kDa)

4.75

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WPP	PF13943	55 - 146	3.6e-37	WPP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47200 AT5G27940 AT5G43070
fragaria_vesca	FvH4_2g33670 FvH4_2g33670
malus_domestica	MD08G1091600.v1.1 MD15G1075600.v1.1
prunus_persica	Prupe.1G429000_v2.0.a1
pyrus_communis	pycom08g07390 pycom15g07080
rosa_chinensis	RchiOBHm_Chr6g0308881
rosa_laevigata	RLG00000010608
rosa_multiflora	Rmu_sc0004046.1_g000014
rosa_roxburghii	Rroxscaffold_7G00159820
rosa_rugosa	Rorug06G0368900 Rorug06G0369000
rosa_samantha	Rh6AG480500 Rh6BG490000 Rh6CG495400 Rh6DG480800
rosa_wichuraiana	Rw6G041880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	364
AccB1I	GGYRCC	3 cut(s)	53, 263, 455
AccII	CGCG	2 cut(s)	198, 461
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	2 cut(s)	176, 525
AcuI	CTGAAG	1 cut(s)	151
AcyI	GRCGYC	3 cut(s)	201, 315, 456
AfeI	AGCGCT	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	307
AgsI	TTSAA	1 cut(s)	547
AjnI	CCWGG	2 cut(s)	422, 442
AluBI	AGCT	2 cut(s)	134, 480
AluI	AGCT	2 cut(s)	134, 480
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	2 cut(s)	218, 464
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	467
Aor51HI	AGCGCT	1 cut(s)	257
AoxI	GGCC	2 cut(s)	176, 525
ApeKI	GCWGC	3 cut(s)	272, 434, 500
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	4 cut(s)	192, 258, 402, 458
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	3 cut(s)	53, 263, 455
BanII	GRGCYC	3 cut(s)	99, 468, 482
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	259, 421, 487
BceAI	ACGGC	4 cut(s)	44, 188, 277, 469
BciT130I	CCWGG	2 cut(s)	424, 444
BcoDI	GTCTC	2 cut(s)	218, 464
BfmI	CTRYAG	1 cut(s)	371
BfoI	RGCGCY	2 cut(s)	259, 459
BfuAI	ACCTGC	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	424, 444
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	7 cut(s)	55, 96, 265, 337, 457, 465, 492
BmrFI	CCNGG	2 cut(s)	424, 444
BmsI	GCATC	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	365
BsaHI	GRCGYC	3 cut(s)	201, 315, 456
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	7 cut(s)	48, 90, 267, 348, 384, 442, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	307
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	2 cut(s)	424, 444
BseDI	CCNNGG	7 cut(s)	48, 90, 267, 348, 384, 442, 459
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	259, 421, 487
BseYI	CCCAGC	2 cut(s)	149, 186
Bsh1236I	CGCG	2 cut(s)	198, 461
BshFI	GGCC	2 cut(s)	178, 527
BshNI	GGYRCC	3 cut(s)	53, 263, 455
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	307
BsmAI	GTCTC	2 cut(s)	218, 464
BsnI	GGCC	2 cut(s)	178, 527
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	4 cut(s)	56, 99, 468, 482
Bsp143I	GATC	2 cut(s)	366, 390
Bsp19I	CCATGG	2 cut(s)	90, 267
BspANI	GGCC	2 cut(s)	178, 527
BspFNI	CGCG	2 cut(s)	198, 461
BspLI	GGNNCC	7 cut(s)	55, 96, 265, 337, 457, 465, 492
BspMAI	CTGCAG	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	361
BspT107I	GGYRCC	3 cut(s)	53, 263, 455
BspTNI	GGTCTC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	510
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	7 cut(s)	48, 90, 267, 348, 384, 442, 459
BssMI	GATC	2 cut(s)	366, 390
BssNI	GRCGYC	3 cut(s)	201, 315, 456
BssT1I	CCWWGG	3 cut(s)	90, 267, 384
Bst2UI	CCWGG	2 cut(s)	424, 444
BstACI	GRCGYC	3 cut(s)	201, 315, 456
BstC8I	GCNNGC	3 cut(s)	398, 404, 478
BstDSI	CCRYGG	3 cut(s)	90, 267, 459
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	2 cut(s)	198, 461
BstH2I	RGCGCY	2 cut(s)	259, 459
BstHHI	GCGC	4 cut(s)	192, 258, 402, 458
BstKTI	GATC	2 cut(s)	369, 393
BstMAI	GTCTC	2 cut(s)	218, 464
BstMBI	GATC	2 cut(s)	366, 390
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 281, 323, 482, 506
BstNI	CCWGG	2 cut(s)	424, 444
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	422, 442
BstSFI	CTRYAG	1 cut(s)	371
BstSLI	GKGCMC	1 cut(s)	56
BstUI	CGCG	2 cut(s)	198, 461
BstV1I	GCAGC	3 cut(s)	259, 421, 487
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	178, 527
BtgI	CCRYGG	3 cut(s)	90, 267, 459
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	517
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	3 cut(s)	398, 404, 478
CaiI	CAGNNNCTG	1 cut(s)	370
CfoI	GCGC	4 cut(s)	192, 258, 402, 458
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	490
Cfr42I	CCGCGG	1 cut(s)	462
CseI	GACGC	5 cut(s)	134, 142, 209, 323, 403
CviAII	CATG	4 cut(s)	91, 268, 403, 555
DinI	GGCGCC	1 cut(s)	457
DpnI	GATC	2 cut(s)	368, 392
DpnII	GATC	2 cut(s)	366, 390
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	176, 525
EciI	GGCGGA	2 cut(s)	76, 328
Ecl136II	GAGCTC	1 cut(s)	480
Eco130I	CCWWGG	3 cut(s)	90, 267, 384
Eco24I	GRGCYC	3 cut(s)	99, 468, 482
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	490
Eco47III	AGCGCT	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	480
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	422, 442
EcoT14I	CCWWGG	3 cut(s)	90, 267, 384
EcoT38I	GRGCYC	3 cut(s)	99, 468, 482
EgeI	GGCGCC	1 cut(s)	457
EheI	GGCGCC	1 cut(s)	457
ErhI	CCWWGG	3 cut(s)	90, 267, 384
FaeI	CATG	4 cut(s)	94, 271, 406, 558
FaiI	YATR	7 cut(s)	92, 173, 175, 269, 404, 524, 556
FatI	CATG	4 cut(s)	90, 267, 402, 554
FauI	CCCGC	1 cut(s)	203
FauNDI	CATATG	1 cut(s)	173
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	3 cut(s)	99, 468, 482
GlaI	GCGC	4 cut(s)	191, 257, 401, 457
GsaI	CCCAGC	2 cut(s)	153, 190
HaeII	RGCGCY	2 cut(s)	259, 459
HaeIII	GGCC	2 cut(s)	178, 527
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	5 cut(s)	134, 142, 209, 323, 403
HhaI	GCGC	4 cut(s)	192, 258, 402, 458
Hin1I	GRCGYC	3 cut(s)	201, 315, 456
Hin1II	CATG	4 cut(s)	94, 271, 406, 558
Hin6I	GCGC	4 cut(s)	190, 256, 400, 456
HinP1I	GCGC	4 cut(s)	190, 256, 400, 456
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	44, 101, 361
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	4 cut(s)	157, 211, 379, 490
Hpy188I	TCNGA	5 cut(s)	43, 49, 106, 289, 366
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	4 cut(s)	157, 211, 379, 490
Hpy99I	CGWCG	5 cut(s)	128, 203, 209, 281, 317
HpyAV	CCTTC	2 cut(s)	175, 328
HpyCH4V	TGCA	2 cut(s)	373, 538
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 281, 323, 482, 506
Hsp92I	GRCGYC	3 cut(s)	201, 315, 456
Hsp92II	CATG	4 cut(s)	94, 271, 406, 558
HspAI	GCGC	4 cut(s)	190, 256, 400, 456
KasI	GGCGCC	1 cut(s)	455
KspI	CCGCGG	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	366, 390
LmnI	GCTCC	3 cut(s)	94, 341, 463
Lsp1109I	GCAGC	3 cut(s)	259, 421, 487
LweI	GCATC	1 cut(s)	508
MalI	GATC	2 cut(s)	368, 392
MboI	GATC	2 cut(s)	366, 390
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	4 cut(s)	56, 99, 468, 482
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	1 cut(s)	9
MluNI	TGGCCA	1 cut(s)	527
Mly113I	GGCGCC	1 cut(s)	456
MmeI	TCCRAC	2 cut(s)	21, 312
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	1 cut(s)	8
MslI	CAYNNNNRTG	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	3 cut(s)	434, 461, 500
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	424, 444
MvaI	CCWGG	2 cut(s)	424, 444
MvnI	CGCG	2 cut(s)	198, 461
MwoI	GCNNNNNNNGC	5 cut(s)	187, 281, 323, 482, 506
NarI	GGCGCC	1 cut(s)	456
NcoI	CCATGG	2 cut(s)	90, 267
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	2 cut(s)	366, 390
NlaIII	CATG	4 cut(s)	94, 271, 406, 558
NlaIV	GGNNCC	7 cut(s)	55, 96, 265, 337, 457, 465, 492
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	44, 101, 361
PflFI	GACNNNGTC	2 cut(s)	203, 413
PfoI	TCCNGGA	1 cut(s)	422
PluTI	GGCGCC	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	422, 442
PspFI	CCCAGC	2 cut(s)	149, 186
PspGI	CCWGG	2 cut(s)	422, 442
PspN4I	GGNNCC	7 cut(s)	55, 96, 265, 337, 457, 465, 492
PspPI	GGNCC	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	366
PsyI	GACNNNGTC	2 cut(s)	203, 413
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	1 cut(s)	482
SacII	CCGCGG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	8
Sau3AI	GATC	2 cut(s)	366, 390
Sau96I	GGNCC	1 cut(s)	490
SbfI	CCTGCAGG	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	424, 444
SdaI	CCTGCAGG	1 cut(s)	375
SduI	GDGCHC	4 cut(s)	56, 99, 468, 482
SetI	ASST	7 cut(s)	19, 86, 136, 164, 303, 378, 482
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	371
SfoI	GGCGCC	1 cut(s)	457
Sfr303I	CCGCGG	1 cut(s)	462
SgrAI	CRCCGGYG	1 cut(s)	329
SgrBI	CCGCGG	1 cut(s)	462
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	35
SphI	GCATGC	1 cut(s)	406
Sse8387I	CCTGCAGG	1 cut(s)	375
Sse9I	AATT	1 cut(s)	9
SspDI	GGCGCC	1 cut(s)	455
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	422, 442
StyI	CCWWGG	3 cut(s)	90, 267, 384
TaqI	TCGA	4 cut(s)	33, 222, 306, 408
TasI	AATT	1 cut(s)	9
TauI	GCSGC	8 cut(s)	181, 326, 329, 344, 434, 461, 506, 509
TfiI	GAWTC	3 cut(s)	44, 101, 361
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	3 cut(s)	272, 434, 500
TspRI	CASTG	1 cut(s)	517
Tth111I	GACNNNGTC	2 cut(s)	203, 413
VpaK11BI	GGWCC	1 cut(s)	490
XagI	CCTNNNNNAGG	1 cut(s)	305
XceI	RCATGY	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.