Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012231

Physical Location & Seq

Genomic Coordinates Forward (+)

4510822 .. 4512886

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGATTCGTATCTTGAAAAAGAAAAGGGGCAAATGGCAAAGGGCAGAGGTGTGGAAAATCTCAAGTCAACCTCACCTCATCATTTGGTCTTGGTTGTTCCAAACACCACCTCATTTCCCACTTTGTCACTTTAATAACACTGATCATGATCTTCGTTTTCGGCCCTCCTATATAATTACATGCTATCTGGCTCCAAGGCTCTGTCATTCAGTACTCCACTCACCACATATGGGAATGAGCAGCATGAAGGTGCATCAGTTCGCACGTGGACTCTGGGAACACGAACCCTCCCTCACGCTTGGCGGCACCAAACGCTTACGCCCTCTTGCTCCCAGACTGGCCAACACGGCCGCCACCTCCGACACTACTACCACCCTCGCTCCTTTCGATCTCAAGAGTTTCATCAGACCTGAAAGTAGCCCCAGAAAACTTGGATCTTCTAACCAGCTTCAGGAGAAGAAAGATTCCCCTCACCCTCAGGTAGAGTCGCACCCAGGAGGGACACGCTGGAACCCTACGCAAGAACAGATAGGGATACTAGAAATGTTGTATAGAGGAGGAATGCGCACTCCTAATGCACAACAAATAGAGCAAATCACGGCTCAACTTGGCAAGTACGGCAAGATCGAAGGCAAGAATGTGTTTTACTGGTTCCAGAATCACAAGGCACGCGAGAGGCAGAAGCAAAAACGCAGCAGCCTTGGCCTCAGCCACTCTCCAAGAACACCGACTTCTGTAATTACCACCCTGGGAGAAGTAGTGGTGGAAAGAGAGGAAGATAATCCGTACAAGAGAAAGGGTAGGAGCTGGGAATTTGATTGCTTGGTAGAAGGTGATCATAGTAGTAGTACAAGTAGTGTAGTATGTAAGCTCGACAACGACGACGCCATTGAGGGAGGTAGAACTCTGGAGCTCTTTCCATTACATCCAGAAGGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051716 GO:0061458 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

315

Amino Acids

35.99

Weight (kDa)

9.7

Isoelectric Point (pI)

56.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	168 - 227	1.8e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G46480 AT1G46480
fragaria_vesca	FvH4_2g34030 FvH4_2g34030
malus_domestica	MD08G1096300.v1.1 MD15G1079000.v1.1
prunus_persica	Prupe.1G432100_v2.0.a1
pyrus_communis	pycom08g07830 pycom15g07360
rosa_chinensis	RchiOBHm_Chr6g0308351
rosa_laevigata	RLG00000010648
rosa_multiflora	Rmu_sc0005523.1_g000011
rosa_roxburghii	Rroxscaffold_7G00160220
rosa_rugosa	Rorug06G0366200
rosa_samantha	Rh6AG475500 Rh6BG485900 Rh6CG491100 Rh6DG477400
rosa_wichuraiana	Rw6G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	305
AccII	CGCG	1 cut(s)	672
AciI	CCGC	2 cut(s)	303, 351
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	2 cut(s)	339, 348
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	1 cut(s)	434
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	885
AfaI	GTAC	4 cut(s)	213, 617, 788, 850
AfiI	CCNNNNNNNGG	2 cut(s)	230, 451
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	493, 747
AluBI	AGCT	4 cut(s)	448, 807, 871, 913
AluI	AGCT	4 cut(s)	448, 807, 871, 913
Alw21I	GWGCWC	1 cut(s)	915
AlwI	GGATC	1 cut(s)	442
AoxI	GGCC	4 cut(s)	161, 339, 348, 703
ApeKI	GCWGC	3 cut(s)	240, 693, 696
ApoI	RAATTY	1 cut(s)	812
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	162
AsuHPI	GGTGA	4 cut(s)	65, 213, 464, 845
AxyI	CCTNAGG	1 cut(s)	477
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	915
BbrPI	CACGTG	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	915
BbvCI	CCTCAGC	1 cut(s)	707
BbvI	GCAGC	3 cut(s)	252, 705, 708
BceAI	ACGGC	3 cut(s)	363, 615, 634
BciT130I	CCWGG	2 cut(s)	495, 749
BciVI	GTATCC	1 cut(s)	528
BclI	TGATCA	2 cut(s)	142, 835
BfaI	CTAG	1 cut(s)	539
BfuI	GTATCC	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	5 cut(s)	241, 304, 351, 694, 697
BlsI	GCNGC	5 cut(s)	242, 305, 352, 695, 698
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	495, 749
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	4 cut(s)	192, 307, 512, 653
BmrFI	CCNGG	2 cut(s)	495, 749
BmsI	GCATC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	929
Bpu10I	CCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	2 cut(s)	46, 377
BsaAI	YACGTR	1 cut(s)	266
BsaBI	GATNNNNATC	2 cut(s)	8, 147
BsaHI	GRCGYC	1 cut(s)	885
BsaJI	CCNNGG	5 cut(s)	194, 493, 700, 747, 748
BsaXI	ACNNNNNCTCC	6 cut(s)	272, 302, 364, 394, 744, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 451
Bse1I	ACTGG	2 cut(s)	342, 653
Bse21I	CCTNAGG	1 cut(s)	477
Bse8I	GATNNNNATC	2 cut(s)	8, 147
BseBI	CCWGG	2 cut(s)	495, 749
BseDI	CCNNGG	5 cut(s)	194, 493, 700, 747, 748
BseGI	GGATG	1 cut(s)	925
BseJI	GATNNNNATC	2 cut(s)	8, 147
BseLI	CCNNNNNNNGG	2 cut(s)	230, 451
BseMII	CTCAG	2 cut(s)	491, 721
BseNI	ACTGG	2 cut(s)	342, 653
BseRI	GAGGAG	1 cut(s)	570
BseX3I	CGGCCG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	252, 705, 708
BseYI	CCCAGC	1 cut(s)	807
Bsh1236I	CGCG	1 cut(s)	672
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	4 cut(s)	163, 341, 350, 705
BshNI	GGYRCC	1 cut(s)	305
BsiEI	CGRYCG	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	915
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	2 cut(s)	230, 451
BsmFI	GGGAC	1 cut(s)	514
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	4 cut(s)	163, 341, 350, 705
Bsp1286I	GDGCHC	1 cut(s)	915
Bsp143I	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
BspACI	CCGC	2 cut(s)	303, 351
BspANI	GGCC	4 cut(s)	163, 341, 350, 705
BspCNI	CTCAG	2 cut(s)	490, 720
BspFNI	CGCG	1 cut(s)	672
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	192, 307, 512, 653
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	342, 653
BssECI	CCNNGG	5 cut(s)	194, 493, 700, 747, 748
BssMI	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
BssNI	GRCGYC	1 cut(s)	885
BssT1I	CCWWGG	2 cut(s)	194, 700
Bst2UI	CCWGG	2 cut(s)	495, 749
BstACI	GRCGYC	1 cut(s)	885
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	2 cut(s)	477, 707
BstF5I	GGATG	1 cut(s)	925
BstFNI	CGCG	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	6 cut(s)	145, 151, 391, 437, 627, 838
BstMBI	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	4 cut(s)	312, 347, 618, 702
BstNI	CCWGG	2 cut(s)	495, 749
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	493, 747
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	252, 705, 708
BstX2I	RGATCY	1 cut(s)	434
BstYI	RGATCY	1 cut(s)	434
BstZI	CGGCCG	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	477
BsuI	GTATCC	1 cut(s)	528
BsuRI	GGCC	4 cut(s)	163, 341, 350, 705
BtsCI	GGATG	1 cut(s)	925
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	670
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	4 cut(s)	212, 616, 787, 849
CviAII	CATG	3 cut(s)	146, 180, 244
CviQI	GTAC	4 cut(s)	212, 616, 787, 849
DdeI	CTNAG	2 cut(s)	477, 707
DpnI	GATC	6 cut(s)	144, 150, 390, 436, 626, 837
DpnII	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
EaeI	YGGCCR	2 cut(s)	339, 348
EagI	CGGCCG	1 cut(s)	348
Ecl136II	GAGCTC	1 cut(s)	913
EclXI	CGGCCG	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	194, 700
Eco24I	GRGCYC	1 cut(s)	915
Eco52I	CGGCCG	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	913
Eco57I	CTGAAG	1 cut(s)	434
Eco72I	CACGTG	1 cut(s)	266
Eco81I	CCTNAGG	1 cut(s)	477
EcoICRI	GAGCTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	493, 747
EcoT14I	CCWWGG	2 cut(s)	194, 700
EcoT38I	GRGCYC	1 cut(s)	915
ErhI	CCWWGG	2 cut(s)	194, 700
FaeI	CATG	3 cut(s)	149, 183, 247
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	3 cut(s)	145, 179, 243
FauNDI	CATATG	1 cut(s)	228
FbaI	TGATCA	2 cut(s)	142, 835
Fnu4HI	GCNGC	5 cut(s)	241, 304, 351, 694, 697
FokI	GGATG	1 cut(s)	912
FriOI	GRGCYC	1 cut(s)	915
Fsp4HI	GCNGC	5 cut(s)	241, 304, 351, 694, 697
FspAI	RTGCGCAY	1 cut(s)	566
FspBI	CTAG	1 cut(s)	539
FspI	TGCGCA	1 cut(s)	566
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	5 cut(s)	241, 304, 351, 694, 697
GsaI	CCCAGC	1 cut(s)	811
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	4 cut(s)	163, 341, 350, 705
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	885
Hin1II	CATG	3 cut(s)	149, 183, 247
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	5 cut(s)	4, 270, 464, 485, 658
HphI	GGTGA	4 cut(s)	65, 213, 464, 845
Hpy166II	GTNNAC	2 cut(s)	68, 269
Hpy188I	TCNGA	2 cut(s)	361, 407
Hpy188III	TCNNGA	7 cut(s)	13, 146, 394, 452, 655, 908, 929
Hpy8I	GTNNAC	2 cut(s)	68, 269
Hpy99I	CGWCG	2 cut(s)	884, 887
HpyAV	CCTTC	4 cut(s)	241, 623, 824, 926
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	253, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	312, 347, 618, 702
HpyF3I	CTNAG	2 cut(s)	477, 707
HpySE526I	ACGT	1 cut(s)	265
Hsp92I	GRCGYC	1 cut(s)	885
Hsp92II	CATG	3 cut(s)	149, 183, 247
HspAI	GCGC	1 cut(s)	565
Ksp22I	TGATCA	2 cut(s)	142, 835
Kzo9I	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
LmnI	GCTCC	5 cut(s)	196, 334, 385, 804, 910
Lsp1109I	GCAGC	3 cut(s)	252, 705, 708
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	6 cut(s)	144, 150, 390, 436, 626, 837
MboI	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
MboII	GAAGA	4 cut(s)	143, 429, 469, 788
MflI	RGATCY	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	915
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	3 cut(s)	174, 738, 812
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	264, 494
MmeI	TCCRAC	1 cut(s)	384
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	341
MspR9I	CCNGG	2 cut(s)	495, 749
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	2 cut(s)	495, 749
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	4 cut(s)	312, 347, 618, 702
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
NlaIII	CATG	3 cut(s)	149, 183, 247
NlaIV	GGNNCC	4 cut(s)	192, 307, 512, 653
NmuCI	GTSAC	1 cut(s)	125
NsbI	TGCGCA	1 cut(s)	566
NspI	RCATGY	1 cut(s)	183
PagI	TCATGA	1 cut(s)	145
PasI	CCCWGGG	1 cut(s)	748
PcsI	WCGNNNNNNNCGW	3 cut(s)	384, 624, 879
PctI	GAATGC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	4, 464, 658
PkrI	GCNGC	5 cut(s)	242, 305, 352, 695, 698
PleI	GAGTC	2 cut(s)	264, 493
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	2 cut(s)	264, 493
Ppu21I	YACGTR	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	915
Psp6I	CCWGG	2 cut(s)	493, 747
PspCI	CACGTG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	2 cut(s)	493, 747
PspN4I	GGNNCC	4 cut(s)	192, 307, 512, 653
PspPI	GGNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	4 cut(s)	213, 617, 788, 850
RsaNI	GTAC	4 cut(s)	212, 616, 787, 849
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	5 cut(s)	241, 304, 351, 694, 697
Sau3AI	GATC	6 cut(s)	142, 148, 388, 434, 624, 835
Sau96I	GGNCC	1 cut(s)	162
ScaI	AGTACT	1 cut(s)	213
SchI	GAGTC	2 cut(s)	264, 494
ScrFI	CCNGG	2 cut(s)	495, 749
SduI	GDGCHC	1 cut(s)	915
SfaNI	GCATC	1 cut(s)	262
SfiI	GGCCNNNNNGGCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	61, 392
SmoI	CTYRAG	2 cut(s)	61, 392
Sse9I	AATT	3 cut(s)	174, 738, 812
SsiI	CCGC	2 cut(s)	303, 351
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	915
StyD4I	CCNGG	2 cut(s)	493, 747
StyI	CCWWGG	2 cut(s)	194, 700
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	387, 627, 873
TasI	AATT	3 cut(s)	174, 738, 812
TatI	WGTACW	2 cut(s)	211, 848
TauI	GCSGC	2 cut(s)	306, 353
TfiI	GAWTC	3 cut(s)	4, 464, 658
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	3 cut(s)	240, 693, 696
Tsp45I	GTSAC	1 cut(s)	125
TspDTI	ATGAA	2 cut(s)	260, 391
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	812
XceI	RCATGY	1 cut(s)	183
XspI	CTAG	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.