Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Forward (+)

5314975 .. 5317081

Gene Structure 2107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGACGATGATCGAATTCTGGCGCGAGAGAGGCGGCAGATGGAGGAGATCCGGCAACTCGATCTCGAAGAACTGCAGGTCGAAGAGGTCGACGACGACTCCTCCGGCGACGACCGCGACGCTACTGGTCGCCGCACGTCCGATGATTATGCCTTCGATACCTGTTTGGCTTCGTTGCATACGTATCTTGGTGAGGTTGAAGACACTCATCACAGGGTGGCTTTTCTTGATGGGGGCGCCGTCTTGAAGCTCCCTATTTTCTATCTCGAAGGAGTTGTCCTCTTCCCAGAAGCAACCCTTCCCTTAAGAGTTATTCAACCGAATTTTGTACTATCTATTGAGAGAGCACTAACCCAAGTTGATGCTCCTTATACCATTGGTGTGATTCGGGTATTCAGAGATCCTGATAATGGAAGAATAAGGTTTGCGAATGTTGGGACAACCGCAGAGATTCGGCAATATCGGCGATTAGAGGATGGCTCACTGAATGTGGTAACTCGTGGCCAACAGAGATTTCGTCTAAGACGCCGTTGGATTGATGTGGAAGGAGCGCCATGTGGAGAAGTCCAAATCATCCAGGAAGATATACCATTGAGGGCCCCACGGGATGCATTCAGAGATTTGGCACCATTTAGTAATCCAAGAGGCCATAATTTCTCTGTTAAACTGCCTTTAAATGATTCTTGTGCAGGATCAAATGATGATCTATGGATGTGGACAATGATTCAGAGACAAATTCAGATTAAAGCTTTGAGAGTGCACTGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

257

Amino Acids

29.44

Weight (kDa)

5.15

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LON_substr_bdg	PF02190	83 - 194	5.6e-22	ATP-dependent protease La (LON) substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	2 cut(s)	236, 625
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	25, 117
AciI	CCGC	4 cut(s)	34, 115, 133, 444
AclWI	GGATC	3 cut(s)	43, 395, 700
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	15, 322, 735
AcyI	GRCGYC	2 cut(s)	237, 526
AdeI	CACNNNGTG	1 cut(s)	217
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflII	CTTAAG	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	200, 247, 317
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	576
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	2 cut(s)	250, 749
AluI	AGCT	2 cut(s)	250, 749
Alw21I	GWGCWC	2 cut(s)	349, 762
Alw26I	GTCTC	1 cut(s)	724
Alw44I	GTGCAC	1 cut(s)	758
AlwI	GGATC	3 cut(s)	43, 395, 700
AoxI	GGCC	3 cut(s)	502, 597, 646
ApaI	GGGCCC	1 cut(s)	601
ApaLI	GTGCAC	1 cut(s)	758
ApoI	RAATTY	3 cut(s)	15, 322, 735
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AspLEI	GCGC	3 cut(s)	25, 239, 553
AspS9I	GGNCC	2 cut(s)	597, 598
AsuHPI	GGTGA	1 cut(s)	203
BaeGI	GKGCMC	2 cut(s)	601, 762
BalI	TGGCCA	1 cut(s)	504
BanI	GGYRCC	2 cut(s)	236, 625
BanII	GRGCYC	1 cut(s)	601
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	349, 762
BccI	CCATC	3 cut(s)	34, 224, 470
BceAI	ACGGC	2 cut(s)	224, 513
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	724
BfmI	CTRYAG	1 cut(s)	74
BfoI	RGCGCY	2 cut(s)	240, 554
BfrI	CTTAAG	1 cut(s)	304
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	2 cut(s)	35, 133
BlsI	GCNGC	2 cut(s)	36, 134
Bme1390I	CCNGG	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	597, 598
BmiI	GGNNCC	4 cut(s)	238, 599, 600, 627
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	2 cut(s)	352, 598
BpiI	GAAGAC	1 cut(s)	207
BplI	GAGNNNNNCTC	4 cut(s)	264, 296, 464, 496
BsaAI	YACGTR	1 cut(s)	183
BsaHI	GRCGYC	2 cut(s)	237, 526
BsaJI	CCNNGG	1 cut(s)	602
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 86, 113, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	578
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	4 cut(s)	481, 573, 613, 717
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	2 cut(s)	59, 91
BseSI	GKGCMC	2 cut(s)	601, 762
BsgI	GTGCAG	1 cut(s)	708
Bsh1236I	CGCG	2 cut(s)	25, 117
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	504, 599, 648
BshNI	GGYRCC	2 cut(s)	236, 625
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	349, 762
BsiSI	CCGG	2 cut(s)	52, 105
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	3 cut(s)	504, 599, 648
Bsp120I	GGGCCC	1 cut(s)	597
Bsp1286I	GDGCHC	3 cut(s)	349, 601, 762
Bsp143I	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
BspACI	CCGC	4 cut(s)	34, 115, 133, 444
BspANI	GGCC	3 cut(s)	504, 599, 648
BspFNI	CGCG	2 cut(s)	25, 117
BspLI	GGNNCC	4 cut(s)	238, 599, 600, 627
BspMAI	CTGCAG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	3 cut(s)	43, 395, 700
BspT107I	GGYRCC	2 cut(s)	236, 625
BspTI	CTTAAG	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
BssNI	GRCGYC	2 cut(s)	237, 526
BssSI	CACGAG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	1 cut(s)	764
Bst6I	CTCTTC	2 cut(s)	78, 287
BstACI	GRCGYC	2 cut(s)	237, 526
BstAFI	CTTAAG	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	521
BstDSI	CCRYGG	1 cut(s)	602
BstF5I	GGATG	4 cut(s)	481, 573, 613, 717
BstFNI	CGCG	2 cut(s)	25, 117
BstH2I	RGCGCY	2 cut(s)	240, 554
BstHHI	GCGC	3 cut(s)	25, 239, 553
BstKTI	GATC	6 cut(s)	13, 51, 64, 403, 695, 706
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 114, 463
BstNI	CCWGG	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	576
BstSFI	CTRYAG	1 cut(s)	74
BstSLI	GKGCMC	2 cut(s)	601, 762
BstSNI	TACGTA	1 cut(s)	183
BstUI	CGCG	2 cut(s)	25, 117
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	48, 400
BstYI	RGATCY	2 cut(s)	48, 400
BsuRI	GGCC	3 cut(s)	504, 599, 648
BtgI	CCRYGG	1 cut(s)	602
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	4 cut(s)	481, 573, 613, 717
BtsIMutI	CAGTG	2 cut(s)	482, 760
BveI	ACCTGC	1 cut(s)	67
CfoI	GCGC	3 cut(s)	25, 239, 553
Cfr13I	GGNCC	2 cut(s)	597, 598
CseI	GACGC	2 cut(s)	128, 534
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	1 cut(s)	555
CviJI	RGCY	8 cut(s)	170, 221, 250, 480, 504, 599, 648, 749
CviKI_1	RGCY	8 cut(s)	170, 221, 250, 480, 504, 599, 648, 749
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	1 cut(s)	521
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	6 cut(s)	12, 50, 63, 402, 694, 705
DpnII	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
DraI	TTTAAA	1 cut(s)	675
DraIII	CACNNNGTG	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	2 cut(s)	78, 287
EarI	CTCTTC	2 cut(s)	78, 287
Eco105I	TACGTA	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	601
EcoO109I	RGGNCCY	2 cut(s)	597, 598
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	601
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
FaeI	CATG	1 cut(s)	558
FaiI	YATR	7 cut(s)	150, 180, 372, 556, 587, 651, 709
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	35, 133
FokI	GGATG	4 cut(s)	488, 560, 620, 724
FriOI	GRGCYC	1 cut(s)	601
Fsp4HI	GCNGC	2 cut(s)	35, 133
GlaI	GCGC	3 cut(s)	24, 238, 552
GluI	GCNGC	2 cut(s)	35, 133
HaeII	RGCGCY	2 cut(s)	240, 554
HaeIII	GGCC	3 cut(s)	504, 599, 648
HapII	CCGG	2 cut(s)	52, 105
HgaI	GACGC	2 cut(s)	128, 534
HhaI	GCGC	3 cut(s)	25, 239, 553
Hin1I	GRCGYC	2 cut(s)	237, 526
Hin1II	CATG	1 cut(s)	558
Hin6I	GCGC	3 cut(s)	23, 237, 551
HinP1I	GCGC	3 cut(s)	23, 237, 551
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	5 cut(s)	98, 385, 451, 680, 724
HpaII	CCGG	2 cut(s)	52, 105
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	91, 717, 760
Hpy188I	TCNGA	5 cut(s)	142, 398, 617, 729, 741
Hpy188III	TCNNGA	5 cut(s)	65, 227, 244, 266, 404
Hpy8I	GTNNAC	3 cut(s)	91, 717, 760
Hpy99I	CGWCG	4 cut(s)	95, 98, 113, 122
HpyAV	CCTTC	4 cut(s)	163, 263, 308, 539
HpyCH4III	ACNGT	1 cut(s)	764
HpyCH4IV	ACGT	2 cut(s)	137, 182
HpyCH4V	TGCA	5 cut(s)	76, 178, 611, 689, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 114, 463
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	2 cut(s)	137, 182
Hsp92I	GRCGYC	2 cut(s)	237, 526
Hsp92II	CATG	1 cut(s)	558
HspAI	GCGC	3 cut(s)	23, 237, 551
KasI	GGCGCC	1 cut(s)	236
Kzo9I	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
LmnI	GCTCC	3 cut(s)	255, 370, 548
LweI	GCATC	2 cut(s)	352, 598
MaeII	ACGT	2 cut(s)	137, 182
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	6 cut(s)	12, 50, 63, 402, 694, 705
MboI	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
MboII	GAAGA	6 cut(s)	80, 95, 212, 274, 426, 593
MflI	RGATCY	2 cut(s)	48, 400
MhlI	GDGCHC	3 cut(s)	349, 601, 762
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	4 cut(s)	15, 322, 652, 735
MluNI	TGGCCA	1 cut(s)	504
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	512
MnlI	CCTC	9 cut(s)	24, 37, 79, 112, 187, 290, 466, 588, 638
Mox20I	TGGCCA	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	4 cut(s)	305, 663, 674, 744
MslI	CAYNNNNRTG	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	504
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	2 cut(s)	52, 105
MspR9I	CCNGG	1 cut(s)	578
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	2 cut(s)	25, 117
MwoI	GCNNNNNNNGC	3 cut(s)	31, 114, 463
NarI	GGCGCC	1 cut(s)	237
NdeII	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
NlaIII	CATG	1 cut(s)	558
NlaIV	GGNNCC	4 cut(s)	238, 599, 600, 627
NsiI	ATGCAT	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 179
PctI	GAATGC	1 cut(s)	611
PfeI	GAWTC	4 cut(s)	385, 451, 680, 724
PfoI	TCCNGGA	1 cut(s)	576
PkrI	GCNGC	2 cut(s)	36, 134
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	4 cut(s)	238, 599, 600, 627
PspOMI	GGGCCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	597, 598
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	48, 400
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	380
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	305, 663, 674, 744
SatI	GCNGC	2 cut(s)	35, 133
Sau3AI	GATC	6 cut(s)	10, 48, 61, 400, 692, 703
Sau96I	GGNCC	2 cut(s)	597, 598
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	3 cut(s)	349, 601, 762
SetI	ASST	9 cut(s)	81, 90, 140, 164, 185, 198, 252, 425, 751
SfaNI	GCATC	2 cut(s)	352, 598
SfcI	CTRYAG	1 cut(s)	74
SfoI	GGCGCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
SnaBI	TACGTA	1 cut(s)	183
Sse9I	AATT	4 cut(s)	15, 322, 652, 735
SsiI	CCGC	4 cut(s)	34, 115, 133, 444
SspDI	GGCGCC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	1 cut(s)	764
TaiI	ACGT	2 cut(s)	140, 185
TaqI	TCGA	7 cut(s)	13, 60, 66, 81, 90, 156, 267
TasI	AATT	4 cut(s)	15, 322, 652, 735
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	2 cut(s)	37, 135
TfiI	GAWTC	4 cut(s)	385, 451, 680, 724
Tru1I	TTAA	4 cut(s)	305, 663, 674, 744
Tru9I	TTAA	4 cut(s)	305, 663, 674, 744
TscAI	CASTG	2 cut(s)	489, 767
TspRI	CASTG	2 cut(s)	489, 767
Vha464I	CTTAAG	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	758
XapI	RAATTY	3 cut(s)	15, 322, 735
XmiI	GTMKAC	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.