Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008459

Physical Location & Seq

Genomic Coordinates Forward (+)

5317135 .. 5318802

Gene Structure 1668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAAGAATCAACAACTTCAAGCAGTGATGATGAGAAGTCACATTTACAATTGCAATCAAAAGACTCTGATTCTTCAGATTCATTGCATTCATGCCCTGAGATTAGTAATGCTGATTTGGCAAGCAGTTCCATGTCAGACATGCAATCCTGCAAACAGAAAGAGCCAAATAAATGTTGGAGAAATACGGACTTAAATCAGTTTCGTAGAGTTCCAAGAGCATTCTGGCCCCATTGGGTATACCGCATGTACGACTCTTATTGTCTTGCTCAAAGAGCAGCAGATATGTGGAAAGAGATAGTTGGGGCACCAAGCACGGATCGTCTTGTGAAGAAGCCTGATCTTTTGTCATTTTATATCGCTAGTAAAATCCCTGTCTCAGAATCTACAAGGCAGGAGCTTTTGGAGATTGACGGCATTTCATATAGGTTGCGTAGAGAAATTGAGTTGCTTCAGAGGTTCGATCTTATTCGGTGTAAAACATGTCAGACTATCATTGCGAGGCGGAGGAATATGCTGGTGATGTCAAGTGAAGGTCCTCTTGGTGCTTATGTGAACCCACATGGCCACGTTCATGAGATAATGACTTTCTACAAAGCAAATGGCTTGGCACTTATAGGACCACCAACGAGTGAATACAGCTGGTTTCCTGGGTATGCGTGGACAATAACAAACTGTACGGGCTGCGAAACCCAAATGGGTTGGCTCTTTACAGCCACAAAAATGAATTTGAAGCCAAAATTTTTTTGGGGGATTCGAAGTTCCCAAGTTTCAGATGACCTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007423 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009790 GO:0009887 GO:0009888 GO:0009987 GO:0010498 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0031461 GO:0031464 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033333 GO:0033334 GO:0033339 GO:0035107 GO:0035113 GO:0035118 GO:0035138 GO:0035239 GO:0035295 GO:0036211 GO:0042471 GO:0042472 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043583 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048513 GO:0048562 GO:0048568 GO:0048598 GO:0048729 GO:0048731 GO:0048736 GO:0048839 GO:0048856 GO:0051603 GO:0060173 GO:0060429 GO:0060562 GO:0070647 GO:0071599 GO:0071600 GO:0071704 GO:0080008 GO:0090596 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LON_substr_bdg Yippee-Mis18

Protein Analysis

263

Amino Acids

30.13

Weight (kDa)

7.03

Isoelectric Point (pI)

62.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yippee-Mis18	PF03226	157 - 254	9.2e-07	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25740 AT2G25740
fragaria_vesca	FvH4_2g35320 FvH4_2g35320 FvH4_2g35320 FvH4_2g35320
malus_domestica	MD08G1111400.v1.1 MD15G1090900.v1.1
prunus_persica	Prupe.1G445300_v2.0.a1 Prupe.1G445300_v2.0.a1
pyrus_communis	pycom08g09250 pycom15g08480 pycom15g08490
rosa_chinensis	RchiOBHm_Chr6g0306601
rosa_laevigata	RLG00000010781
rosa_multiflora	Rmu_sc0017624.1_g000002
rosa_roxburghii	Rroxscaffold_7G00161620
rosa_rugosa	Rorug06G0350900
rosa_samantha	Rh6AG463200 Rh6BG437700 Rh6CG477500 Rh6DG464000
rosa_wichuraiana	Rw6G040360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	2 cut(s)	244, 505
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	727, 740
AcuI	CTGAAG	2 cut(s)	60, 437
AfaI	GTAC	2 cut(s)	251, 679
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	2 cut(s)	21, 733
AjnI	CCWGG	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AloI	GAACNNNNNNTCC	2 cut(s)	745, 777
AluBI	AGCT	2 cut(s)	400, 642
AluI	AGCT	2 cut(s)	400, 642
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	2 cut(s)	227, 565
ApeKI	GCWGC	2 cut(s)	278, 684
ApoI	RAATTY	2 cut(s)	727, 740
AspS9I	GGNCC	3 cut(s)	228, 536, 620
AsuHPI	GGTGA	1 cut(s)	532
AsuII	TTCGAA	1 cut(s)	757
AvaII	GGWCC	2 cut(s)	536, 620
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	290, 671
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	651
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	363, 787
BisI	GCNGC	2 cut(s)	279, 685
BlsI	GCNGC	2 cut(s)	280, 686
Bme1390I	CCNGG	1 cut(s)	651
Bme18I	GGWCC	2 cut(s)	536, 620
BmgT120I	GGNCC	3 cut(s)	228, 536, 620
BmiI	GGNNCC	2 cut(s)	230, 309
BmrFI	CCNGG	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	757
BsaJI	CCNNGG	1 cut(s)	650
Bse3DI	GCAATG	2 cut(s)	83, 495
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	1 cut(s)	650
BseMI	GCAATG	2 cut(s)	83, 495
BseMII	CTCAG	2 cut(s)	90, 393
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	290, 671
BsgI	GTGCAG	1 cut(s)	767
BshFI	GGCC	2 cut(s)	229, 567
BshNI	GGYRCC	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	382
BsmI	GAATGC	2 cut(s)	88, 221
BsnI	GGCC	2 cut(s)	229, 567
Bsp119I	TTCGAA	1 cut(s)	757
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	319, 340, 463
BspACI	CCGC	2 cut(s)	244, 505
BspANI	GGCC	2 cut(s)	229, 567
BspCNI	CTCAG	2 cut(s)	91, 392
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	230, 309
BspPI	GGATC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	757
BspT107I	GGYRCC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	83, 495
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	3 cut(s)	319, 340, 463
BssNAI	GTATAC	1 cut(s)	241
Bst1107I	GTATAC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	2 cut(s)	99, 379
BstKTI	GATC	3 cut(s)	322, 343, 466
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	3 cut(s)	319, 340, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 275
BstNI	CCWGG	1 cut(s)	651
BstNSI	RCATGY	3 cut(s)	145, 250, 486
BstSCI	CCNGG	1 cut(s)	649
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	2 cut(s)	290, 671
BstZ17I	GTATAC	1 cut(s)	241
BsuRI	GGCC	2 cut(s)	229, 567
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	574
Cfr13I	GGNCC	3 cut(s)	228, 536, 620
Csp6I	GTAC	2 cut(s)	250, 678
CviAII	CATG	7 cut(s)	93, 133, 142, 247, 483, 563, 575
CviQI	GTAC	2 cut(s)	250, 678
DdeI	CTNAG	2 cut(s)	99, 379
DpnI	GATC	3 cut(s)	321, 342, 465
DpnII	GATC	3 cut(s)	319, 340, 463
EaeI	YGGCCR	1 cut(s)	565
EciI	GGCGGA	1 cut(s)	520
Eco47I	GGWCC	2 cut(s)	536, 620
Eco57I	CTGAAG	2 cut(s)	60, 437
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	649
FaeI	CATG	7 cut(s)	96, 136, 145, 250, 486, 566, 578
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	7 cut(s)	92, 132, 141, 246, 482, 562, 574
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	279, 685
Fsp4HI	GCNGC	2 cut(s)	279, 685
FspBI	CTAG	2 cut(s)	363, 787
GluI	GCNGC	2 cut(s)	279, 685
HaeIII	GGCC	2 cut(s)	229, 567
Hin1II	CATG	7 cut(s)	96, 136, 145, 250, 486, 566, 578
HinfI	GANTC	7 cut(s)	8, 65, 71, 80, 254, 383, 754
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	3 cut(s)	241, 556, 663
Hpy188I	TCNGA	7 cut(s)	70, 79, 139, 382, 456, 489, 775
Hpy188III	TCNNGA	1 cut(s)	575
Hpy8I	GTNNAC	3 cut(s)	241, 556, 663
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	1 cut(s)	677
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	5 cut(s)	55, 88, 145, 153, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 275
HpyF3I	CTNAG	2 cut(s)	99, 379
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	7 cut(s)	96, 136, 145, 250, 486, 566, 578
Kzo9I	GATC	3 cut(s)	319, 340, 463
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	2 cut(s)	290, 671
MaeI	CTAG	2 cut(s)	363, 787
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	3 cut(s)	321, 342, 465
MboI	GATC	3 cut(s)	319, 340, 463
MboII	GAAGA	3 cut(s)	17, 66, 343
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	4 cut(s)	50, 441, 727, 740
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	2 cut(s)	59, 248
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	4 cut(s)	450, 495, 501, 549
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	2 cut(s)	573, 722
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	642
MspR9I	CCNGG	1 cut(s)	651
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	2 cut(s)	88, 221
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	119, 275
NdeII	GATC	3 cut(s)	319, 340, 463
NlaIII	CATG	7 cut(s)	96, 136, 145, 250, 486, 566, 578
NlaIV	GGNNCC	2 cut(s)	230, 309
NmuCI	GTSAC	1 cut(s)	39
NspI	RCATGY	3 cut(s)	145, 250, 486
NspV	TTCGAA	1 cut(s)	757
PagI	TCATGA	1 cut(s)	574
PciI	ACATGT	1 cut(s)	482
PctI	GAATGC	2 cut(s)	88, 221
PfeI	GAWTC	5 cut(s)	8, 71, 80, 383, 754
PkrI	GCNGC	2 cut(s)	280, 686
PleI	GAGTC	2 cut(s)	59, 248
PpsI	GAGTC	2 cut(s)	59, 248
PpuMI	RGGWCCY	1 cut(s)	536
PscI	ACATGT	1 cut(s)	482
Psp5II	RGGWCCY	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	2 cut(s)	230, 309
PspPI	GGNCC	3 cut(s)	228, 536, 620
PspPPI	RGGWCCY	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	642
RsaI	GTAC	2 cut(s)	251, 679
RsaNI	GTAC	2 cut(s)	250, 678
RseI	CAYNNNNRTG	2 cut(s)	573, 722
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	279, 685
Sau3AI	GATC	3 cut(s)	319, 340, 463
Sau96I	GGNCC	3 cut(s)	228, 536, 620
SchI	GAGTC	2 cut(s)	59, 248
ScrFI	CCNGG	1 cut(s)	651
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	7 cut(s)	402, 431, 461, 538, 573, 644, 783
SfuI	TTCGAA	1 cut(s)	757
SinI	GGWCC	2 cut(s)	536, 620
SmiMI	CAYNNNNRTG	2 cut(s)	573, 722
Sse9I	AATT	4 cut(s)	50, 441, 727, 740
SsiI	CCGC	2 cut(s)	244, 505
SspMI	CTAG	2 cut(s)	363, 787
StyD4I	CCNGG	1 cut(s)	649
TaaI	ACNGT	1 cut(s)	677
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	462, 757
TasI	AATT	4 cut(s)	50, 441, 727, 740
TfiI	GAWTC	5 cut(s)	8, 71, 80, 383, 754
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	2 cut(s)	278, 684
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	5 cut(s)	72, 81, 411, 563, 740
TspGWI	ACGGA	2 cut(s)	203, 332
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	536, 620
XapI	RAATTY	2 cut(s)	727, 740
XceI	RCATGY	3 cut(s)	145, 250, 486
XcmI	CCANNNNNNNNNTGG	3 cut(s)	174, 222, 744
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	2 cut(s)	363, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.