Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007604

Physical Location & Seq

Genomic Coordinates Reverse (-)

5415234 .. 5421199

Gene Structure 5966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGATGGCTGTGACGTCTTCCTGCAAAGATGGTGGGATGAAGATGCAGATGGACAATGGCAAGTACGTAAGGTACACGCCGGAGCAAGTGGAAGCTTTAGAGCGGTTGTACCATGAGTGCCCGAAGCCGAGCTCCATGCGCCGCCAGCAGCTCATCCGCGAGTGCCCTATCCTCTCCAACATCGAGCCGAAGCAGATCAAAGTTTGGTTCCAAAACCGCAGATGCAGAGAGAAGCAGCGGAAGGAGGCGTCGAGATTGCAGACTGTGAACAGAAAGCTGACGGCGATGAATAAGCTTCTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCTCAGCTGGTCTATGAGAACAGCTATTTCCGCCAGCACACACAAAATGCAACTCTGGCAACGACAGACACGAGTTGTGAGTCGGTCGTGACGAGCGGTCAACACCATTTGACTGCACAGCAGCATCCACCACCAAGGGATGCCAGCCCTGCAGGACTTCTGTCCATTGCAGAGGAAACTTTAGCAGAGTTTTTATCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAATTGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCACGGTTGCACTGGTGTGGCAGCACGTGCATGCGGCCTTGTAGGTCTAGACCCTACAAGAGTCGCTGAAATACTCAAAGATCGGCCTTCGTGGTTCCGAAACTGCCGATCTGTGGATGTGCTCAATGTAATGTCCACTGGCAATGGTGGAACCATTGAACTTCTTTACATGCAGCTCTACGCACCCACTACTTTGGCACCAGCTCGAGACTTCTGGTTGCTTCGCTACACATCGGTTCTAGAAGACGGTAGTCTCGTGGTATGTGAAAGATCACTTAACAACACACAGAATGGTCCTAGCATGCCACCAGTGCAGAATTTTGTGAGAGCGGAAATGCTGCCGAGCGGGTACCTAATTAGACCTTGTGAAGGTGGTGGCTCGATCCTTCACATTGTTGATCATATGGATTTAGAGCCTTGGAGTGTACCTGAAGTGTTGCGCCCGCTTTATGAGTCACCAACACTTCTTGCTCAGAAGACAACTATGGCGGCATTACGCAACCTTAGGCAGATATCTCAAGAAGTTTCTAAGCCTAATTCCGCCGGTTGGGGAAGAAGGCCTGCAGCTCTCCGTGCTCTTAGTCAGAGATTGAGCAAGGGTTTCAACGAAGCAGTTAACGGGTTTACAGATGAGGGATGGTCTGTTCTAGAAAGTGATGGTGTCGATGATGTTACCCTTCTTGTGAACTCGTCTCCGGGCAAGATGATGAGTGCAAATCTTTATACCGATGGAGTTCCATCTATGAGCACTGCAGTCTTATGTGCCAAAGCATCCATGTTACTCCAAAATGTGCCTCCAGCCATACTTCTCAGATTCTTGCGAGAACACCGATCAGAGTGGGCTGACAGAAGCATTGATGCTTATTCAGCTGCTGCTGTTAAAGCTGGTCCCTGCAACATGCTAGGGCCTCGAGTTGGAAGTTTCGGGGATCAGGTTATTCTTCCCCTAGCTCACACAATTGAGCACGAAGAGTTCATGGAGGTCATTAAGATTGAGAACATGGGGCACTATCGAGAGGATATGATTATGCCTGCTGCTGACATTTTCCTCTTGCAACTGTGTAGTGGAGTGGATGAGAATGCCGTTGGGACCTGCTCTGAACTAGTATTTGCTCCCATCGATGCATCGTTTTCGGATGATGCTCCAATTCTACCTTCTGGTTTCCGCATCATCCCTCTTGATTCTCGGATGGATACTCCCAGTCCAAACCGTACGCTTGATCTTGCCTCGGCTCTTGAAGTTGGACCCGCAGGAAGCAGAGCTTCTGGTGATAATGCTGGCCACTCTGGCAATACAAAGTCTGTAATGACAATAGCATTCCAGTTTGCATTTGAAATTCACCTCCAAGAAAATGTAGCCTCCATGGCTCGGCAGTATGTGCGCAGTATCATAGCATCAGTGCAGAGGGTGGCACTGGCGCTCTCCCCTTCTCGTTTTGGTTCTCATGCTGGTTTCCGGCCTCCACCTGGCACTCCCGAAGCACAAACACTTGCCGGTTGGATTTGTCAGAGCTATAGGTGCTATCTAGGTGGAGAACTACTAAAAACTGAAGGAAGCGAGTCCATTCTCAAATCCCTTTGGCATCACCCGGATGCAATCTTATGCTGCTCTTTGAAGGCAATGCCAATTTTTACATTCGGAAACCAGGCAGCCCTGGACATGCTTGAGACGACGTTAATTGCACTTCAAGACATTATGCTGGAAAAGATTTTCGATGACAATGGAAGGAAGACACTCTGCTCCGAGTTCCCGCAGATAATGCAGCAGGGTTTTATGTGTCTTCAAGGAGGAATATGTATGTCAAGCATGGGAAGGCCGATCTCGTACGAGAGAGCAGTAGCATGGAAGGTGCTGAATGAAGAAGAAACCGCTCACTGCATCTGCTTCATGTTCATCAACTGGTCATTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0010014 GO:0010016 GO:0010033 GO:0010065 GO:0010067 GO:0010072 GO:0010087 GO:0010089 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090421 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

843

Amino Acids

92.85

Weight (kDa)

5.97

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	21 - 79	4.7e-16	Homeodomain
START	PF01852	167 - 375	5.4e-54	START domain
MEKHLA	PF08670	701 - 841	2.3e-48	MEKHLA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32880
fragaria_vesca	FvH4_2g35360 FvH4_2g35360 FvH4_2g35360 FvH4_2g35360
malus_domestica	MD08G1112900.v1.1 MD15G1092200.v1.1
prunus_persica	Prupe.1G447100_v2.0.a1 Prupe.1G447100_v2.0.a1
pyrus_communis	pycom08g09360 pycom110g00010 pycom15g08570
rosa_chinensis	RchiOBHm_Chr6g0306551
rosa_laevigata	RLG00000010786
rosa_multiflora	Rmu_sc0002971.1_g000003 Rmu_sc0002971.1_g000004
rosa_roxburghii	Rroxscaffold_7G00161680
rosa_rugosa	Rorug06G0350500 Rorug06G0350500
rosa_samantha	Rh6AG462700 Rh6BG438100 Rh6CG476800 Rh6DG463500
rosa_wichuraiana	Rw6G040320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
AatII	GACGTC	1 cut(s)	17
Acc16I	TGCGCA	1 cut(s)	1997
Acc36I	ACCTGC	2 cut(s)	319, 1715
Acc65I	GGTACC	1 cut(s)	963
AccB1I	GGYRCC	2 cut(s)	811, 963
AccBSI	CCGCTC	5 cut(s)	103, 429, 944, 960, 2486
AccII	CGCG	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	586
AclWI	GGATC	2 cut(s)	991, 1551
AcoI	YGGCCR	1 cut(s)	1894
AcsI	RAATTY	2 cut(s)	931, 1950
AcuI	CTGAAG	2 cut(s)	1065, 2184
AcvI	CACGTG	1 cut(s)	641
AcyI	GRCGYC	2 cut(s)	14, 248
AfaI	GTAC	7 cut(s)	65, 74, 110, 965, 1041, 1828, 2441
AfiI	CCNNNNNNNGG	6 cut(s)	727, 983, 1161, 1529, 1983, 2081
AgsI	TTSAA	7 cut(s)	773, 1219, 1853, 1949, 2230, 2303, 2399
AhdI	GACNNNNNGTC	1 cut(s)	429
AhlI	ACTAGT	1 cut(s)	1717
AjnI	CCWGG	5 cut(s)	568, 580, 2080, 2259, 2268
AjuI	GAANNNNNNNTTGG	2 cut(s)	1753, 1785
AleI	CACNNNNGTG	1 cut(s)	629
AloI	GAACNNNNNNTCC	2 cut(s)	1242, 1274
Alw21I	GWGCWC	5 cut(s)	134, 738, 1192, 1364, 1581
Alw26I	GTCTC	5 cut(s)	339, 816, 872, 1311, 2276
AlwI	GGATC	2 cut(s)	991, 1551
AlwNI	CAGNNNCTG	1 cut(s)	1487
Ama87I	CYCGRG	2 cut(s)	819, 1524
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	8 cut(s)	534, 649, 698, 1172, 1520, 1894, 2072, 2429
ApoI	RAATTY	2 cut(s)	931, 1950
Asp718I	GGTACC	1 cut(s)	963
AspLEI	GCGC	4 cut(s)	141, 1056, 1998, 2035
AspS9I	GGNCC	7 cut(s)	559, 584, 908, 1502, 1520, 1704, 1859
AsuC2I	CCSGG	2 cut(s)	1311, 2204
AsuHPI	GGTGA	4 cut(s)	1062, 1895, 1946, 2192
AvaI	CYCGRG	2 cut(s)	819, 1524
AvaII	GGWCC	6 cut(s)	559, 584, 908, 1502, 1704, 1859
AxyI	CCTNAGG	1 cut(s)	1118
BaeGI	GKGCMC	3 cut(s)	122, 167, 1623
BalI	TGGCCA	1 cut(s)	1896
BanI	GGYRCC	2 cut(s)	811, 963
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	2 cut(s)	403, 869
BbrPI	CACGTG	1 cut(s)	641
BbsI	GAAGAC	5 cut(s)	9, 864, 1097, 2351, 2387
Bbv12I	GWGCWC	5 cut(s)	134, 738, 1192, 1364, 1581
BccI	CCATC	9 cut(s)	23, 43, 295, 1245, 1265, 1337, 1360, 1739, 1798
BceAI	ACGGC	2 cut(s)	297, 1682
BcgI	CGANNNNNNTGC	4 cut(s)	118, 152, 1728, 1762
BciT130I	CCWGG	5 cut(s)	570, 582, 2082, 2261, 2270
BciVI	GTATCC	1 cut(s)	1801
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	2 cut(s)	1311, 2204
BcoDI	GTCTC	5 cut(s)	339, 816, 872, 1311, 2276
BcuI	ACTAGT	1 cut(s)	1717
BfaI	CTAG	8 cut(s)	662, 854, 912, 1262, 1517, 1562, 1718, 2141
BfmI	CTRYAG	4 cut(s)	483, 1176, 1365, 2128
BfoI	RGCGCY	1 cut(s)	2036
BfuAI	ACCTGC	2 cut(s)	319, 1715
BfuI	GTATCC	1 cut(s)	1801
BglI	GCCNNNNNGGC	2 cut(s)	1902, 1979
Bme1390I	CCNGG	7 cut(s)	570, 582, 1311, 2082, 2204, 2261, 2270
Bme18I	GGWCC	6 cut(s)	559, 584, 908, 1502, 1704, 1859
BmeRI	GACNNNNNGTC	1 cut(s)	429
BmeT110I	CYCGRG	2 cut(s)	819, 1524
BmgT120I	GGNCC	7 cut(s)	559, 584, 908, 1502, 1520, 1704, 1859
BmiI	GGNNCC	9 cut(s)	209, 560, 710, 766, 813, 965, 1504, 1705, 1861
BmrFI	CCNGG	7 cut(s)	570, 582, 1311, 2082, 2204, 2261, 2270
BmrI	ACTGGG	1 cut(s)	1809
BmuI	ACTGGG	1 cut(s)	1809
BoxI	GACNNNNGTC	2 cut(s)	493, 864
BpiI	GAAGAC	5 cut(s)	9, 864, 1097, 2351, 2387
BpmI	CTGGAG	1 cut(s)	1395
BpuEI	CTTGAG	2 cut(s)	1116, 2300
BpuMI	CCSGG	2 cut(s)	1311, 2204
Bsa29I	ATCGAT	1 cut(s)	1734
BsaAI	YACGTR	2 cut(s)	67, 641
BsaHI	GRCGYC	2 cut(s)	14, 248
BsaJI	CCNNGG	6 cut(s)	467, 569, 1031, 1842, 1977, 2268
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	6 cut(s)	727, 983, 1161, 1529, 1983, 2081
Bse118I	RCCGGY	2 cut(s)	1157, 2108
Bse1I	ACTGG	8 cut(s)	544, 631, 757, 923, 1815, 1936, 2034, 2519
Bse21I	CCTNAGG	1 cut(s)	1118
Bse3DI	GCAATG	3 cut(s)	498, 763, 2241
BseAI	TCCGGA	1 cut(s)	586
BseBI	CCWGG	5 cut(s)	570, 582, 2082, 2261, 2270
BseCI	ATCGAT	1 cut(s)	1734
BseDI	CCNNGG	6 cut(s)	467, 569, 1031, 1842, 1977, 2268
BseLI	CCNNNNNNNGG	6 cut(s)	727, 983, 1161, 1529, 1983, 2081
BseMI	GCAATG	3 cut(s)	498, 763, 2241
BseMII	CTCAG	3 cut(s)	350, 1100, 1438
BseNI	ACTGG	8 cut(s)	544, 631, 757, 923, 1815, 1936, 2034, 2519
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	3 cut(s)	122, 167, 1623
BsgI	GTGCAG	3 cut(s)	432, 947, 2036
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	8 cut(s)	536, 651, 700, 1174, 1522, 1896, 2074, 2431
BshNI	GGYRCC	2 cut(s)	811, 963
BshVI	ATCGAT	1 cut(s)	1734
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	5 cut(s)	134, 738, 1192, 1364, 1581
BsiHKCI	CYCGRG	2 cut(s)	819, 1524
BsiSI	CCGG	7 cut(s)	80, 587, 1158, 1310, 2071, 2109, 2204
BsiWI	CGTACG	2 cut(s)	1826, 2439
BslFI	GGGAC	2 cut(s)	1488, 1717
BslI	CCNNNNNNNGG	6 cut(s)	727, 983, 1161, 1529, 1983, 2081
BsmAI	GTCTC	5 cut(s)	339, 816, 872, 1311, 2276
BsmBI	CGTCTC	2 cut(s)	1311, 2276
BsmFI	GGGAC	2 cut(s)	1488, 1717
BsmI	GAATGC	2 cut(s)	1699, 1931
BsnI	GGCC	8 cut(s)	536, 651, 700, 1174, 1522, 1896, 2074, 2431
BsoBI	CYCGRG	2 cut(s)	819, 1524
Bsp1286I	GDGCHC	8 cut(s)	122, 134, 167, 738, 1192, 1364, 1581, 1623
Bsp13I	TCCGGA	1 cut(s)	586
Bsp19I	CCATGG	1 cut(s)	1977
BspANI	GGCC	8 cut(s)	536, 651, 700, 1174, 1522, 1896, 2074, 2431
BspCNI	CTCAG	3 cut(s)	349, 1099, 1437
BspDI	ATCGAT	1 cut(s)	1734
BspEI	TCCGGA	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	9 cut(s)	209, 560, 710, 766, 813, 965, 1504, 1705, 1861
BspMAI	CTGCAG	3 cut(s)	487, 1180, 1369
BspMI	ACCTGC	2 cut(s)	319, 1715
BspPI	GGATC	2 cut(s)	991, 1551
BspT107I	GGYRCC	2 cut(s)	811, 963
BsrBI	CCGCTC	5 cut(s)	103, 429, 944, 960, 2486
BsrDI	GCAATG	3 cut(s)	498, 763, 2241
BsrFI	RCCGGY	2 cut(s)	1157, 2108
BsrI	ACTGG	8 cut(s)	544, 631, 757, 923, 1815, 1936, 2034, 2519
BssAI	RCCGGY	2 cut(s)	1157, 2108
BssECI	CCNNGG	6 cut(s)	467, 569, 1031, 1842, 1977, 2268
BssNI	GRCGYC	2 cut(s)	14, 248
BssSI	CACGAG	2 cut(s)	403, 869
BssT1I	CCWWGG	3 cut(s)	467, 1031, 1977
Bst2BI	CACGAG	2 cut(s)	403, 869
Bst2UI	CCWGG	5 cut(s)	570, 582, 2082, 2261, 2270
Bst4CI	ACNGT	5 cut(s)	265, 620, 863, 1674, 1826
Bst6I	CTCTTC	1 cut(s)	1578
BstACI	GRCGYC	2 cut(s)	14, 248
BstAPI	GCANNNNNTGC	3 cut(s)	641, 1993, 2374
BstBAI	YACGTR	2 cut(s)	67, 641
BstC8I	GCNNGC	9 cut(s)	146, 368, 478, 646, 917, 1058, 1176, 1647, 1894
BstDEI	CTNAG	6 cut(s)	336, 1086, 1118, 1143, 1193, 1424
BstDSI	CCRYGG	1 cut(s)	1977
BstENI	CCTNNNNNAGG	1 cut(s)	981
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	2036
BstHHI	GCGC	4 cut(s)	141, 1056, 1998, 2035
BstMAI	GTCTC	5 cut(s)	339, 816, 872, 1311, 2276
BstMCI	CGRYCG	1 cut(s)	420
BstNI	CCWGG	5 cut(s)	570, 582, 2082, 2261, 2270
BstNSI	RCATGY	5 cut(s)	648, 787, 919, 1516, 2278
BstPAI	GACNNNNGTC	2 cut(s)	493, 864
BstSCI	CCNGG	7 cut(s)	568, 580, 1309, 2080, 2202, 2259, 2268
BstSFI	CTRYAG	4 cut(s)	483, 1176, 1365, 2128
BstSLI	GKGCMC	3 cut(s)	122, 167, 1623
BstSNI	TACGTA	1 cut(s)	67
BstUI	CGCG	1 cut(s)	159
BstV2I	GAAGAC	5 cut(s)	9, 864, 1097, 2351, 2387
BstXI	CCANNNNNNTGG	2 cut(s)	569, 808
Bsu15I	ATCGAT	1 cut(s)	1734
Bsu36I	CCTNAGG	1 cut(s)	1118
BsuI	GTATCC	1 cut(s)	1801
BsuRI	GGCC	8 cut(s)	536, 651, 700, 1174, 1522, 1896, 2074, 2431
BsuTUI	ATCGAT	1 cut(s)	1734
BtgI	CCRYGG	1 cut(s)	1977
BtgZI	GCGATG	1 cut(s)	299
BtsI	GCAGTG	2 cut(s)	1362, 2488
BtsIMutI	CAGTG	8 cut(s)	537, 624, 750, 930, 1362, 2019, 2027, 2488
BveI	ACCTGC	2 cut(s)	319, 1715
Cac8I	GCNNGC	9 cut(s)	146, 368, 478, 646, 917, 1058, 1176, 1647, 1894
CaiI	CAGNNNCTG	1 cut(s)	1487
CfoI	GCGC	4 cut(s)	141, 1056, 1998, 2035
Cfr10I	RCCGGY	2 cut(s)	1157, 2108
Cfr13I	GGNCC	7 cut(s)	559, 584, 908, 1502, 1520, 1704, 1859
ClaI	ATCGAT	1 cut(s)	1734
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	7 cut(s)	64, 73, 109, 964, 1040, 1827, 2440
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviQI	GTAC	7 cut(s)	64, 73, 109, 964, 1040, 1827, 2440
DdeI	CTNAG	6 cut(s)	336, 1086, 1118, 1143, 1193, 1424
DriI	GACNNNNNGTC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	1894
Eam1104I	CTCTTC	1 cut(s)	1578
Eam1105I	GACNNNNNGTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	1578
EciI	GGCGGA	2 cut(s)	353, 1144
Ecl136II	GAGCTC	1 cut(s)	132
Eco105I	TACGTA	1 cut(s)	67
Eco130I	CCWWGG	3 cut(s)	467, 1031, 1977
Eco147I	AGGCCT	1 cut(s)	1174
Eco24I	GRGCYC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	1128
Eco47I	GGWCC	6 cut(s)	559, 584, 908, 1502, 1704, 1859
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	2 cut(s)	1065, 2184
Eco72I	CACGTG	1 cut(s)	641
Eco81I	CCTNAGG	1 cut(s)	1118
Eco88I	CYCGRG	2 cut(s)	819, 1524
EcoICRI	GAGCTC	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	981
EcoO109I	RGGNCCY	2 cut(s)	1520, 1704
EcoRII	CCWGG	5 cut(s)	568, 580, 2080, 2259, 2268
EcoRV	GATATC	1 cut(s)	1128
EcoT14I	CCWWGG	3 cut(s)	467, 1031, 1977
EcoT22I	ATGCAT	1 cut(s)	1741
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	3 cut(s)	467, 1031, 1977
Esp3I	CGTCTC	2 cut(s)	1311, 2276
FalI	AAGNNNNNCTT	2 cut(s)	1861, 1893
FaqI	GGGAC	2 cut(s)	1488, 1717
FauI	CCCGC	4 cut(s)	953, 1065, 1870, 2373
FauNDI	CATATG	1 cut(s)	1017
FbaI	TGATCA	1 cut(s)	1012
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	8 cut(s)	662, 854, 912, 1262, 1517, 1562, 1718, 2141
FspI	TGCGCA	1 cut(s)	1997
GlaI	GCGC	4 cut(s)	140, 1055, 1997, 2034
GsuI	CTGGAG	1 cut(s)	1395
HaeII	RGCGCY	1 cut(s)	2036
HaeIII	GGCC	8 cut(s)	536, 651, 700, 1174, 1522, 1896, 2074, 2431
HapII	CCGG	7 cut(s)	80, 587, 1158, 1310, 2071, 2109, 2204
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	4 cut(s)	141, 1056, 1998, 2035
Hin1I	GRCGYC	2 cut(s)	14, 248
Hin6I	GCGC	4 cut(s)	139, 1054, 1996, 2033
HinP1I	GCGC	4 cut(s)	139, 1054, 1996, 2033
HincII	GTYRAC	2 cut(s)	434, 1231
HindII	GTYRAC	2 cut(s)	434, 1231
HindIII	AAGCTT	2 cut(s)	93, 293
HinfI	GANTC	8 cut(s)	413, 590, 600, 675, 1067, 1428, 1796, 2174
HpaI	GTTAAC	1 cut(s)	1231
HpaII	CCGG	7 cut(s)	80, 587, 1158, 1310, 2071, 2109, 2204
HphI	GGTGA	4 cut(s)	1062, 1895, 1946, 2192
Hpy166II	GTNNAC	8 cut(s)	75, 268, 434, 750, 1040, 1231, 1239, 1300
Hpy8I	GTNNAC	8 cut(s)	75, 268, 434, 750, 1040, 1231, 1239, 1300
Hpy99I	CGWCG	2 cut(s)	253, 2290
HpyCH4III	ACNGT	5 cut(s)	265, 620, 863, 1674, 1826
HpyCH4IV	ACGT	4 cut(s)	14, 66, 640, 2288
HpyF3I	CTNAG	6 cut(s)	336, 1086, 1118, 1143, 1193, 1424
HpySE526I	ACGT	4 cut(s)	14, 66, 640, 2288
Hsp92I	GRCGYC	2 cut(s)	14, 248
HspAI	GCGC	4 cut(s)	139, 1054, 1996, 2033
Kpn2I	TCCGGA	1 cut(s)	586
KpnI	GGTACC	1 cut(s)	967
Ksp22I	TGATCA	1 cut(s)	1012
KspAI	GTTAAC	1 cut(s)	1231
LmnI	GCTCC	5 cut(s)	82, 137, 1732, 1762, 2360
MaeI	CTAG	8 cut(s)	662, 854, 912, 1262, 1517, 1562, 1718, 2141
MaeII	ACGT	4 cut(s)	14, 66, 640, 2288
MaeIII	GTNAC	5 cut(s)	10, 421, 1068, 1285, 1392
MbiI	CCGCTC	5 cut(s)	103, 429, 944, 960, 2486
MfeI	CAATTG	2 cut(s)	563, 1572
MhlI	GDGCHC	8 cut(s)	122, 134, 167, 738, 1192, 1364, 1581, 1623
MlsI	TGGCCA	1 cut(s)	1896
MluNI	TGGCCA	1 cut(s)	1896
MlyI	GAGTC	4 cut(s)	422, 684, 1076, 2183
MmeI	TCCRAC	4 cut(s)	201, 1510, 1837, 2093
Mox20I	TGGCCA	1 cut(s)	1896
Mph1103I	ATGCAT	1 cut(s)	1741
MroI	TCCGGA	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	1896
MseI	TTAA	6 cut(s)	891, 1230, 1494, 1602, 2291, 2527
MslI	CAYNNNNRTG	3 cut(s)	629, 643, 2205
Msp20I	TGGCCA	1 cut(s)	1896
MspA1I	CMGCKG	3 cut(s)	238, 340, 1484
MspI	CCGG	7 cut(s)	80, 587, 1158, 1310, 2071, 2109, 2204
MspR9I	CCNGG	7 cut(s)	570, 582, 1311, 2082, 2204, 2261, 2270
MunI	CAATTG	2 cut(s)	563, 1572
Mva1269I	GAATGC	2 cut(s)	1699, 1931
MvaI	CCWGG	5 cut(s)	570, 582, 2082, 2261, 2270
MvnI	CGCG	1 cut(s)	159
NciI	CCSGG	2 cut(s)	1311, 2204
NcoI	CCATGG	1 cut(s)	1977
NdeI	CATATG	1 cut(s)	1017
NlaIV	GGNNCC	9 cut(s)	209, 560, 710, 766, 813, 965, 1504, 1705, 1861
NmeAIII	GCCGAG	4 cut(s)	153, 981, 1823, 1963
NmuCI	GTSAC	3 cut(s)	10, 421, 1068
NsbI	TGCGCA	1 cut(s)	1997
NsiI	ATGCAT	1 cut(s)	1741
NspI	RCATGY	5 cut(s)	648, 787, 919, 1516, 2278
OliI	CACNNNNGTG	1 cut(s)	629
PaeI	GCATGC	2 cut(s)	648, 919
PaeR7I	CTCGAG	2 cut(s)	819, 1524
PaqCI	CACCTGC	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	1174
PcsI	WCGNNNNNNNCGW	3 cut(s)	401, 422, 867
PctI	GAATGC	2 cut(s)	1699, 1931
PfeI	GAWTC	4 cut(s)	590, 600, 1428, 1796
Pfl23II	CGTACG	2 cut(s)	1826, 2439
PleI	GAGTC	4 cut(s)	421, 683, 1075, 2182
PmaCI	CACGTG	1 cut(s)	641
PmlI	CACGTG	1 cut(s)	641
PpsI	GAGTC	4 cut(s)	421, 683, 1075, 2182
Ppu21I	YACGTR	2 cut(s)	67, 641
PpuMI	RGGWCCY	1 cut(s)	1704
PshAI	GACNNNNGTC	2 cut(s)	493, 864
Psp124BI	GAGCTC	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	1704
Psp6I	CCWGG	5 cut(s)	568, 580, 2080, 2259, 2268
PspCI	CACGTG	1 cut(s)	641
PspGI	CCWGG	5 cut(s)	568, 580, 2080, 2259, 2268
PspLI	CGTACG	2 cut(s)	1826, 2439
PspN4I	GGNNCC	9 cut(s)	209, 560, 710, 766, 813, 965, 1504, 1705, 1861
PspPI	GGNCC	7 cut(s)	559, 584, 908, 1502, 1520, 1704, 1859
PspPPI	RGGWCCY	1 cut(s)	1704
PspXI	VCTCGAGB	1 cut(s)	1524
PstI	CTGCAG	3 cut(s)	487, 1180, 1369
PstNI	CAGNNNCTG	1 cut(s)	1487
PvuII	CAGCTG	2 cut(s)	340, 1484
RsaI	GTAC	7 cut(s)	65, 74, 110, 965, 1041, 1828, 2441
RsaNI	GTAC	7 cut(s)	64, 73, 109, 964, 1040, 1827, 2440
RseI	CAYNNNNRTG	3 cut(s)	629, 643, 2205
SacI	GAGCTC	1 cut(s)	134
SaqAI	TTAA	6 cut(s)	891, 1230, 1494, 1602, 2291, 2527
Sau96I	GGNCC	7 cut(s)	559, 584, 908, 1502, 1520, 1704, 1859
SbfI	CCTGCAGG	1 cut(s)	487
SchI	GAGTC	4 cut(s)	422, 684, 1076, 2183
ScrFI	CCNGG	7 cut(s)	570, 582, 1311, 2082, 2204, 2261, 2270
SdaI	CCTGCAGG	1 cut(s)	487
SduI	GDGCHC	8 cut(s)	122, 134, 167, 738, 1192, 1364, 1581, 1623
SfcI	CTRYAG	4 cut(s)	483, 1176, 1365, 2128
Sfr274I	CTCGAG	2 cut(s)	819, 1524
SinI	GGWCC	6 cut(s)	559, 584, 908, 1502, 1704, 1859
SlaI	CTCGAG	2 cut(s)	819, 1524
SmiMI	CAYNNNNRTG	3 cut(s)	629, 643, 2205
SmlI	CTYRAG	4 cut(s)	819, 1131, 1524, 2279
SmoI	CTYRAG	4 cut(s)	819, 1131, 1524, 2279
SnaBI	TACGTA	1 cut(s)	67
SpeI	ACTAGT	1 cut(s)	1717
SphI	GCATGC	2 cut(s)	648, 919
Sse8387I	CCTGCAGG	1 cut(s)	487
SseBI	AGGCCT	1 cut(s)	1174
SspMI	CTAG	8 cut(s)	662, 854, 912, 1262, 1517, 1562, 1718, 2141
SstI	GAGCTC	1 cut(s)	134
StuI	AGGCCT	1 cut(s)	1174
StyD4I	CCNGG	7 cut(s)	568, 580, 1309, 2080, 2202, 2259, 2268
StyI	CCWWGG	3 cut(s)	467, 1031, 1977
TaaI	ACNGT	5 cut(s)	265, 620, 863, 1674, 1826
TaiI	ACGT	4 cut(s)	17, 69, 643, 2291
TaqI	TCGA	9 cut(s)	183, 251, 820, 995, 1278, 1525, 1627, 1734, 2328
TaqII	GACCGA	1 cut(s)	406
TauI	GCSGC	3 cut(s)	144, 651, 1106
TfiI	GAWTC	4 cut(s)	590, 600, 1428, 1796
Tru1I	TTAA	6 cut(s)	891, 1230, 1494, 1602, 2291, 2527
Tru9I	TTAA	6 cut(s)	891, 1230, 1494, 1602, 2291, 2527
TscAI	CASTG	8 cut(s)	544, 631, 757, 930, 1369, 2019, 2034, 2495
TseFI	GTSAC	3 cut(s)	10, 421, 1068
Tsp45I	GTSAC	3 cut(s)	10, 421, 1068
TspDTI	ATGAA	7 cut(s)	53, 302, 590, 1579, 2487, 2491, 2497
TspGWI	ACGGA	1 cut(s)	1175
TspRI	CASTG	8 cut(s)	544, 631, 757, 930, 1369, 2019, 2034, 2495
VpaK11BI	GGWCC	6 cut(s)	559, 584, 908, 1502, 1704, 1859
XagI	CCTNNNNNAGG	1 cut(s)	981
XapI	RAATTY	2 cut(s)	931, 1950
XbaI	TCTAGA	3 cut(s)	661, 853, 1261
XceI	RCATGY	5 cut(s)	648, 787, 919, 1516, 2278
XhoI	CTCGAG	2 cut(s)	819, 1524
XspI	CTAG	8 cut(s)	662, 854, 912, 1262, 1517, 1562, 1718, 2141
ZraI	GACGTC	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	1741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.