pycom15g08600

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015152
Physical Location & Seq
Forward (+)
5462009 .. 5467321
5313 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2064 bp
ATGCCCGGCGTCGCCTATGACTCCGGCGACATGGCTGGCGCATTAGGCTCCAATGACACCGCTATGGTCCCACACTCGCCTGAGATCCGGCAACCCGTCGTGTACTCACTTCACCACGGCCTCAACCCTCCGATCGCTCGCCTCTCCATCTCGTGGTCCCGGGGCAACACTCTGCGCGTGTCAGTTCTCCGTCCGCCTTCCGGCGAAGACTCCGAAAAGGATGAAGTTGGCGGGAAAGTGGTGGAGGTGAGGCTTAGTAATGGAGACGGCGAAAATGGCGATGCGAAGTGGCGGAGGATCGGTTACGGTTCTGTGCCGCCGTTCGCCCTACTACAGAGCCGGAGGAGCTCGGTTGCGAGCTTATCGAAGGTGTCAATGGGTCCGTCGCTGTACAACATTGATTGGTGGGAGTATGTGATGGAGTACAGCAAGGACATAAATTCACTTCTTGGTAGCTCTAAGTCGCTTCCTATTGCAGTGATCGAAGACCCGAAGATGGTTTTGAGGGATCTCGATAGTCTACTTTCCAGCACACAGCCAACGGTCCATTCGAAGCTTGTGGATTTTCAAAATGAACTTGTTGAGTTACAGGTTATTGAGGACAATCCTAAATATTGGGAAGTATTATCTTCGGCACTGGCAGTTGGCTGGATTGAGATTGTGGTGAAAATGTTGCGGTTACATGGATCTTATCAACTTCATCAGCTTGGAAACCGTGAGACAGAGAATGGACTTGTAGAGACAGTTTCCGTCCTTATTTCAAAGATGCCACGCATGCGTCCTGAAGTAGAAGATGGAAAGTTAGGTGAATGCTTCAAAGCAAAGCCAGATTTTATCAAGGCATGGGAGAAATGGAGAGCGCAAATTACTAAACTCGACTGCAGTGCATTCTGGCGTCATTGTGATCACCGTCAAACCCGGGAGGGGTTGAAAAATATGATACAAATTATGCTCGGAAACACTGACAATCTCTGCAACGTAACTTGCCATTGGATAGAGCTGTTTGTTTCTCACTTTCTATATGTCAGACCATTCACAGTGGGTCTTGAAAGCATGCATGACCTAGCCCAGAAGTGCATGCAGTTAAAACCAAGGTCTGGTTCCCATGGGTTGATAGCAATTCTTCTTGGAATCCTAGGGGAAAATACCGAGGTTGTCCTAGCAGAATGCTCAAGAGCATTTGGGCCTTGGATGGTTGCCCATGCCATTGAGTTGTTGACTACTGGGAGCGATGAAGCAGAACTTCTTCTACAGGAAGAACGCGATAGCCTGGGGGGAATTAGTATAGCAGAATCACATCGACTTGTCTATGCTCAAGTCCTGTCGTCACATCCATTGACTTGGCAAATTGCTCCAATTTACTTGACATCTTGCACGAAGCAGGGAATGGCTTTGTTAGAGATTCTATTGTATAAGCTGCCAATTCAACATAATGAAACGCTACTTAAGAATATAGAGATATGCCGTCTTTATGAACTCAACACTGTTAGTTCAAACATTATGAAGATTGCTGGGGTGTACCATTGGAAGCATGGTAGGAAAGGTGCTGGAGTTTTTTGGCTTCAACAAGCCCGAGATGAAGTTCGTCTTAGCAGGATTGCTCAGCAATTGTTTGATTCTGTTGGAAAGTCGATATCTGATGAAAGTTTCAAGCAATGGGAAGGCTTGATTGAATTGTTGGGTTCTGAATCCAAGGCTACAGGGGGTCTTGAATTTTTGCACAAGTATAGGGATTTCAAAAAGTCCCTTAAGCAAGTTTATGATGGAAAAACCACTGATGCTGCTCGGCAAGCTGTAGAATCTTTGATATCGCTTATGAAAAACCCATCTACGCCTCAGCGCTTTTGGCTGCCTCTTCTGCATGACTCGTTAAAGCTGCTTAACTGGCCGGACCGGCCTCTGCTAGATGTGTCTCAGACAACCCTCTTGTTGAATAAACTGCAAGAGTTGTCCATGGCTAAGCTCCGTCCAGACTTTATCGAGGCAGACTTGCCACCGCAAGCACTCATTTCTGTACGGTTAGCTCTTGCTGCAAATCTCGGCCGTGCCACCTTAGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
Nucleopor_Nup85

Protein Analysis

688

Amino Acids

77.08

Weight (kDa)

6.31

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleopor_Nup85 PF07575 171 - 649 5.9e-126 Nup85 Nucleoporin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32910
fragaria_vesca FvH4_2g35520
malus_domestica MD15G1093200.v1.1
prunus_persica Prupe.1G448000_v2.0.a1
pyrus_communis pycom15g08600
rosa_chinensis RchiOBHm_Chr6g0306261
rosa_laevigata RLG00000010809
rosa_multiflora Rmu_sc0017002.1_g000002 Rmu_sc0037804.1_g000002
rosa_roxburghii Rroxscaffold_7G00161900
rosa_rugosa Rorug06G0348400
rosa_samantha Rh6AG460900 Rh6BG440100 Rh6CG475200 Rh6DG461500
rosa_wichuraiana Rw6G040160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 153, 1097
AccI GTMKAC 1 cut(s) 520
AccII CGCG 2 cut(s) 177, 1263
AciI CCGC 7 cut(s) 60, 194, 231, 292, 317, 676, 1997
AclWI GGATC 4 cut(s) 79, 305, 516, 694
AcoI YGGCCR 2 cut(s) 1886, 2041
AcsI RAATTY 2 cut(s) 439, 1712
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 2 cut(s) 9, 895
AfaI GTAC 5 cut(s) 104, 392, 425, 1520, 2016
AfeI AGCGCT 1 cut(s) 1841
AfiI CCNNNNNNNGG 5 cut(s) 153, 200, 496, 924, 1097
AflII CTTAAG 2 cut(s) 1445, 1748
AjnI CCWGG 1 cut(s) 1269
AjuI GAANNNNNNNTTGG 4 cut(s) 532, 564, 1084, 1116
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 4 cut(s) 258, 713, 734, 1917
AlwI GGATC 4 cut(s) 79, 305, 516, 694
Ama87I CYCGRG 3 cut(s) 159, 918, 1572
Aor51HI AGCGCT 1 cut(s) 1841
AoxI GGCC 5 cut(s) 118, 1184, 1886, 1895, 2041
ApeKI GCWGC 5 cut(s) 1417, 1781, 1849, 1876, 2030
ApoI RAATTY 2 cut(s) 439, 1712
Asp700I GAANNNNTTC 1 cut(s) 1245
AspA2I CCTAGG 1 cut(s) 1135
AspLEI GCGC 4 cut(s) 41, 177, 862, 1842
AspS9I GGNCC 6 cut(s) 67, 156, 380, 544, 1184, 1891
AsuC2I CCSGG 5 cut(s) 6, 160, 161, 919, 920
AsuHPI GGTGA 5 cut(s) 104, 259, 676, 818, 899
AsuII TTCGAA 1 cut(s) 551
AvaI CYCGRG 3 cut(s) 159, 918, 1572
AvaII GGWCC 5 cut(s) 67, 156, 380, 544, 1891
AvrII CCTAGG 1 cut(s) 1135
BanII GRGCYC 1 cut(s) 350
BauI CACGAG 1 cut(s) 151
BbsI GAAGAC 2 cut(s) 213, 492
Bbv12I GWGCWC 1 cut(s) 350
BbvCI CCTCAGC 1 cut(s) 1836
BbvI GCAGC 5 cut(s) 1404, 1768, 1836, 1863, 2017
BccI CCATC 7 cut(s) 155, 412, 490, 788, 1186, 1757, 1834
BceAI ACGGC 5 cut(s) 133, 283, 304, 1449, 2028
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciT130I CCWGG 1 cut(s) 1271
BclI TGATCA 1 cut(s) 904
BcnI CCSGG 5 cut(s) 6, 160, 161, 919, 920
BcoDI GTCTC 4 cut(s) 258, 713, 734, 1917
BfaI CTAG 4 cut(s) 1064, 1136, 1160, 1904
BfmI CTRYAG 5 cut(s) 332, 880, 1250, 1698, 1794
BfoI RGCGCY 1 cut(s) 1843
BfrI CTTAAG 2 cut(s) 1445, 1748
BglI GCCNNNNNGGC 1 cut(s) 1894
BisI GCNGC 6 cut(s) 317, 1418, 1782, 1850, 1877, 2031
BlnI CCTAGG 1 cut(s) 1135
BlpI GCTNAGC 2 cut(s) 1602, 1959
BlsI GCNGC 6 cut(s) 318, 1419, 1783, 1851, 1878, 2032
Bme1390I CCNGG 6 cut(s) 6, 160, 161, 919, 920, 1271
Bme18I GGWCC 5 cut(s) 67, 156, 380, 544, 1891
BmeT110I CYCGRG 3 cut(s) 159, 918, 1572
BmgT120I GGNCC 6 cut(s) 67, 156, 380, 544, 1184, 1891
BmiI GGNNCC 5 cut(s) 49, 69, 158, 381, 1102
BmrFI CCNGG 6 cut(s) 6, 160, 161, 919, 920, 1271
BmrI ACTGGG 1 cut(s) 1233
BmsI GCATC 3 cut(s) 271, 756, 1768
BmuI ACTGGG 1 cut(s) 1233
BpiI GAAGAC 2 cut(s) 213, 492
BpmI CTGGAG 1 cut(s) 1569
Bpu10I CCTNAGC 1 cut(s) 1836
Bpu1102I GCTNAGC 2 cut(s) 1602, 1959
Bpu14I TTCGAA 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 1156, 1299
BpuMI CCSGG 5 cut(s) 6, 160, 161, 919, 920
BsaHI GRCGYC 2 cut(s) 9, 895
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 5 cut(s) 153, 200, 496, 924, 1097
Bse118I RCCGGY 1 cut(s) 1893
Bse1I ACTGG 3 cut(s) 642, 1228, 1889
Bse3DI GCAATG 1 cut(s) 1661
BseBI CCWGG 1 cut(s) 1271
BseGI GGATG 3 cut(s) 226, 1197, 1330
BseLI CCNNNNNNNGG 5 cut(s) 153, 200, 496, 924, 1097
BseMI GCAATG 1 cut(s) 1661
BseMII CTCAG 4 cut(s) 72, 1616, 1850, 1928
BseNI ACTGG 3 cut(s) 642, 1228, 1889
BseRI GAGGAG 1 cut(s) 358
BseX3I CGGCCG 1 cut(s) 2041
BseXI GCAGC 5 cut(s) 1404, 1768, 1836, 1863, 2017
BseYI CCCAGC 1 cut(s) 1511
Bsh1236I CGCG 2 cut(s) 177, 1263
Bsh1285I CGRYCG 2 cut(s) 135, 2044
BshFI GGCC 5 cut(s) 120, 1186, 1888, 1897, 2043
BsiEI CGRYCG 2 cut(s) 135, 2044
BsiHKAI GWGCWC 1 cut(s) 350
BsiHKCI CYCGRG 3 cut(s) 159, 918, 1572
BsiSI CCGG 9 cut(s) 6, 24, 88, 160, 201, 340, 919, 1889, 1894
BslFI GGGAC 3 cut(s) 53, 142, 1729
BslI CCNNNNNNNGG 5 cut(s) 153, 200, 496, 924, 1097
BsmAI GTCTC 4 cut(s) 258, 713, 734, 1917
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 3 cut(s) 53, 142, 1729
BsmI GAATGC 3 cut(s) 815, 887, 1172
BsnI GGCC 5 cut(s) 120, 1186, 1888, 1897, 2043
BsoBI CYCGRG 3 cut(s) 159, 918, 1572
Bsp119I TTCGAA 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
Bsp1720I GCTNAGC 2 cut(s) 1602, 1959
Bsp19I CCATGG 2 cut(s) 1105, 1953
BspACI CCGC 7 cut(s) 60, 194, 231, 292, 317, 676, 1997
BspANI GGCC 5 cut(s) 120, 1186, 1888, 1897, 2043
BspCNI CTCAG 4 cut(s) 73, 1615, 1849, 1927
BspFNI CGCG 2 cut(s) 177, 1263
BspLI GGNNCC 5 cut(s) 49, 69, 158, 381, 1102
BspMAI CTGCAG 1 cut(s) 884
BspPI GGATC 4 cut(s) 79, 305, 516, 694
BspT104I TTCGAA 1 cut(s) 551
BspTI CTTAAG 2 cut(s) 1445, 1748
BsrDI GCAATG 1 cut(s) 1661
BsrFI RCCGGY 1 cut(s) 1893
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 3 cut(s) 642, 1228, 1889
BssAI RCCGGY 1 cut(s) 1893
BssMI GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
BssNI GRCGYC 2 cut(s) 9, 895
BssSI CACGAG 1 cut(s) 151
BssT1I CCWWGG 6 cut(s) 1091, 1105, 1135, 1187, 1692, 1953
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 1271
Bst4CI ACNGT 8 cut(s) 308, 544, 716, 745, 911, 1039, 1486, 2019
Bst6I CTCTTC 1 cut(s) 1860
BstACI GRCGYC 2 cut(s) 9, 895
BstAFI CTTAAG 2 cut(s) 1445, 1748
BstAUI TGTACA 1 cut(s) 390
BstBI TTCGAA 1 cut(s) 551
BstC8I GCNNGC 8 cut(s) 37, 139, 358, 776, 1055, 1079, 1791, 2001
BstDEI CTNAG 9 cut(s) 81, 254, 459, 1589, 1602, 1836, 1914, 1959, 2053
BstDSI CCRYGG 3 cut(s) 115, 1105, 1953
BstF5I GGATG 3 cut(s) 226, 1197, 1330
BstFNI CGCG 2 cut(s) 177, 1263
BstH2I RGCGCY 1 cut(s) 1843
BstHHI GCGC 4 cut(s) 41, 177, 862, 1842
BstKTI GATC 7 cut(s) 87, 135, 300, 483, 511, 689, 907
BstMAI GTCTC 4 cut(s) 258, 713, 734, 1917
BstMBI GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
BstMCI CGRYCG 2 cut(s) 135, 2044
BstNI CCWGG 1 cut(s) 1271
BstNSI RCATGY 3 cut(s) 778, 1057, 1081
BstSCI CCNGG 6 cut(s) 4, 158, 159, 917, 918, 1269
BstSFI CTRYAG 5 cut(s) 332, 880, 1250, 1698, 1794
BstUI CGCG 2 cut(s) 177, 1263
BstV1I GCAGC 5 cut(s) 1404, 1768, 1836, 1863, 2017
BstV2I GAAGAC 2 cut(s) 213, 492
BstX2I RGATCY 3 cut(s) 84, 508, 686
BstXI CCANNNNNNTGG 1 cut(s) 1341
BstYI RGATCY 3 cut(s) 84, 508, 686
BstZI CGGCCG 1 cut(s) 2041
BsuRI GGCC 5 cut(s) 120, 1186, 1888, 1897, 2043
BtgI CCRYGG 3 cut(s) 115, 1105, 1953
BtgZI GCGATG 2 cut(s) 294, 1245
BtsCI GGATG 3 cut(s) 226, 1197, 1330
BtsI GCAGTG 2 cut(s) 483, 889
BtsIMutI CAGTG 7 cut(s) 483, 635, 889, 960, 1044, 1482, 1773
Cac8I GCNNGC 8 cut(s) 37, 139, 358, 776, 1055, 1079, 1791, 2001
CfoI GCGC 4 cut(s) 41, 177, 862, 1842
Cfr10I RCCGGY 1 cut(s) 1893
Cfr13I GGNCC 6 cut(s) 67, 156, 380, 544, 1184, 1891
Cfr9I CCCGGG 2 cut(s) 159, 918
CpoI CGGWCCG 1 cut(s) 1891
CseI GACGC 2 cut(s) 767, 884
Csp6I GTAC 5 cut(s) 103, 391, 424, 1519, 2015
CspI CGGWCCG 1 cut(s) 1891
CviQI GTAC 5 cut(s) 103, 391, 424, 1519, 2015
DdeI CTNAG 9 cut(s) 81, 254, 459, 1589, 1602, 1836, 1914, 1959, 2053
DpnI GATC 7 cut(s) 86, 134, 299, 482, 510, 688, 906
DpnII GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
EaeI YGGCCR 2 cut(s) 1886, 2041
EagI CGGCCG 1 cut(s) 2041
Eam1104I CTCTTC 1 cut(s) 1860
EarI CTCTTC 1 cut(s) 1860
EciI GGCGGA 2 cut(s) 183, 307
Ecl136II GAGCTC 1 cut(s) 348
EclXI CGGCCG 1 cut(s) 2041
Eco130I CCWWGG 6 cut(s) 1091, 1105, 1135, 1187, 1692, 1953
Eco24I GRGCYC 1 cut(s) 350
Eco32I GATATC 2 cut(s) 1635, 1809
Eco47I GGWCC 5 cut(s) 67, 156, 380, 544, 1891
Eco47III AGCGCT 1 cut(s) 1841
Eco52I CGGCCG 1 cut(s) 2041
Eco53kI GAGCTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 804
Eco88I CYCGRG 3 cut(s) 159, 918, 1572
EcoICRI GAGCTC 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 1269
EcoRV GATATC 2 cut(s) 1635, 1809
EcoT14I CCWWGG 6 cut(s) 1091, 1105, 1135, 1187, 1692, 1953
EcoT22I ATGCAT 1 cut(s) 1059
EcoT38I GRGCYC 1 cut(s) 350
ErhI CCWWGG 6 cut(s) 1091, 1105, 1135, 1187, 1692, 1953
Esp3I CGTCTC 1 cut(s) 258
FalI AAGNNNNNCTT 4 cut(s) 1227, 1259, 1572, 1604
FaqI GGGAC 3 cut(s) 53, 142, 1729
FauI CCCGC 1 cut(s) 224
FbaI TGATCA 1 cut(s) 904
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 6 cut(s) 317, 1418, 1782, 1850, 1877, 2031
FokI GGATG 3 cut(s) 233, 1204, 1317
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 6 cut(s) 317, 1418, 1782, 1850, 1877, 2031
FspBI CTAG 4 cut(s) 1064, 1136, 1160, 1904
GlaI GCGC 4 cut(s) 40, 176, 861, 1841
GluI GCNGC 6 cut(s) 317, 1418, 1782, 1850, 1877, 2031
GsaI CCCAGC 1 cut(s) 1515
GsuI CTGGAG 1 cut(s) 1569
HaeII RGCGCY 1 cut(s) 1843
HaeIII GGCC 5 cut(s) 120, 1186, 1888, 1897, 2043
HapII CCGG 9 cut(s) 6, 24, 88, 160, 201, 340, 919, 1889, 1894
HgaI GACGC 2 cut(s) 767, 884
HhaI GCGC 4 cut(s) 41, 177, 862, 1842
Hin1I GRCGYC 2 cut(s) 9, 895
Hin6I GCGC 4 cut(s) 39, 175, 860, 1840
HinP1I GCGC 4 cut(s) 39, 175, 860, 1840
HincII GTYRAC 1 cut(s) 1218
HindII GTYRAC 1 cut(s) 1218
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 9 cut(s) 20, 209, 1131, 1292, 1402, 1616, 1688, 1799, 1865
HpaII CCGG 9 cut(s) 6, 24, 88, 160, 201, 340, 919, 1889, 1894
HphI GGTGA 5 cut(s) 104, 259, 676, 818, 899
Hpy166II GTNNAC 4 cut(s) 103, 521, 1218, 1519
Hpy188I TCNGA 7 cut(s) 132, 214, 956, 1028, 1639, 1687, 1917
Hpy188III TCNNGA 6 cut(s) 512, 782, 1046, 1173, 1709, 1970
Hpy8I GTNNAC 4 cut(s) 103, 521, 1218, 1519
Hpy99I CGWCG 3 cut(s) 14, 101, 388
HpyAV CCTTC 3 cut(s) 207, 361, 1655
HpyCH4III ACNGT 8 cut(s) 308, 544, 716, 745, 911, 1039, 1486, 2019
HpyCH4IV ACGT 1 cut(s) 978
HpyF3I CTNAG 9 cut(s) 81, 254, 459, 1589, 1602, 1836, 1914, 1959, 2053
HpySE526I ACGT 1 cut(s) 978
Hsp92I GRCGYC 2 cut(s) 9, 895
HspAI GCGC 4 cut(s) 39, 175, 860, 1840
Ksp22I TGATCA 1 cut(s) 904
Kzo9I GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
LmnI GCTCC 5 cut(s) 53, 345, 1227, 1357, 1968
Lsp1109I GCAGC 5 cut(s) 1404, 1768, 1836, 1863, 2017
LweI GCATC 3 cut(s) 271, 756, 1768
MaeI CTAG 4 cut(s) 1064, 1136, 1160, 1904
MaeII ACGT 1 cut(s) 978
MaeIII GTNAC 5 cut(s) 302, 585, 678, 979, 1326
MalI GATC 7 cut(s) 86, 134, 299, 482, 510, 688, 906
MboI GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
MfeI CAATTG 1 cut(s) 1607
MflI RGATCY 3 cut(s) 84, 508, 686
MhlI GDGCHC 1 cut(s) 350
MlyI GAGTC 3 cut(s) 14, 203, 1859
MmeI TCCRAC 1 cut(s) 1603
Mph1103I ATGCAT 1 cut(s) 1059
MroXI GAANNNNTTC 1 cut(s) 1245
MseI TTAA 5 cut(s) 1085, 1446, 1749, 1871, 1881
MslI CAYNNNNRTG 1 cut(s) 62
MspCI CTTAAG 2 cut(s) 1445, 1748
MspI CCGG 9 cut(s) 6, 24, 88, 160, 201, 340, 919, 1889, 1894
MspR9I CCNGG 6 cut(s) 6, 160, 161, 919, 920, 1271
MunI CAATTG 1 cut(s) 1607
Mva1269I GAATGC 3 cut(s) 815, 887, 1172
MvaI CCWGG 1 cut(s) 1271
MvnI CGCG 2 cut(s) 177, 1263
NciI CCSGG 5 cut(s) 6, 160, 161, 919, 920
NcoI CCATGG 2 cut(s) 1105, 1953
NdeII GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
NlaIV GGNNCC 5 cut(s) 49, 69, 158, 381, 1102
NmeAIII GCCGAG 2 cut(s) 1765, 2019
NmuCI GTSAC 1 cut(s) 1326
NsiI ATGCAT 1 cut(s) 1059
NspI RCATGY 3 cut(s) 778, 1057, 1081
NspV TTCGAA 1 cut(s) 551
PaeI GCATGC 3 cut(s) 778, 1057, 1081
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PctI GAATGC 3 cut(s) 815, 887, 1172
PdmI GAANNNNTTC 1 cut(s) 1245
PfeI GAWTC 6 cut(s) 1131, 1292, 1402, 1616, 1688, 1799
PflMI CCANNNNNTGG 2 cut(s) 153, 1097
PkrI GCNGC 6 cut(s) 318, 1419, 1783, 1851, 1878, 2032
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 3 cut(s) 14, 203, 1859
PpsI GAGTC 3 cut(s) 14, 203, 1859
Psp124BI GAGCTC 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 1269
PspFI CCCAGC 1 cut(s) 1511
PspGI CCWGG 1 cut(s) 1269
PspN4I GGNNCC 5 cut(s) 49, 69, 158, 381, 1102
PspPI GGNCC 6 cut(s) 67, 156, 380, 544, 1184, 1891
PsrI GAACNNNNNNTAC 2 cut(s) 1233, 1265
PstI CTGCAG 1 cut(s) 884
PsuI RGATCY 3 cut(s) 84, 508, 686
PvuI CGATCG 1 cut(s) 135
RsaI GTAC 5 cut(s) 104, 392, 425, 1520, 2016
RsaNI GTAC 5 cut(s) 103, 391, 424, 1519, 2015
RseI CAYNNNNRTG 1 cut(s) 62
Rsr2I CGGWCCG 1 cut(s) 1891
RsrII CGGWCCG 1 cut(s) 1891
SacI GAGCTC 1 cut(s) 350
SaqAI TTAA 5 cut(s) 1085, 1446, 1749, 1871, 1881
SatI GCNGC 6 cut(s) 317, 1418, 1782, 1850, 1877, 2031
Sau3AI GATC 7 cut(s) 84, 132, 297, 480, 508, 686, 904
Sau96I GGNCC 6 cut(s) 67, 156, 380, 544, 1184, 1891
SchI GAGTC 3 cut(s) 14, 203, 1859
ScrFI CCNGG 6 cut(s) 6, 160, 161, 919, 920, 1271
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 3 cut(s) 271, 756, 1768
SfcI CTRYAG 5 cut(s) 332, 880, 1250, 1698, 1794
SfiI GGCCNNNNNGGCC 1 cut(s) 1894
SfuI TTCGAA 1 cut(s) 551
SinI GGWCC 5 cut(s) 67, 156, 380, 544, 1891
SmaI CCCGGG 2 cut(s) 161, 920
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 4 cut(s) 1171, 1314, 1445, 1748
SmoI CTYRAG 4 cut(s) 1171, 1314, 1445, 1748
SphI GCATGC 3 cut(s) 778, 1057, 1081
SsiI CCGC 7 cut(s) 60, 194, 231, 292, 317, 676, 1997
SspI AATATT 1 cut(s) 614
SspMI CTAG 4 cut(s) 1064, 1136, 1160, 1904
SstI GAGCTC 1 cut(s) 350
StyD4I CCNGG 6 cut(s) 4, 158, 159, 917, 918, 1269
StyI CCWWGG 6 cut(s) 1091, 1105, 1135, 1187, 1692, 1953
TaaI ACNGT 8 cut(s) 308, 544, 716, 745, 911, 1039, 1486, 2019
TaiI ACGT 1 cut(s) 981
TaqI TCGA 8 cut(s) 365, 483, 513, 551, 876, 1300, 1631, 1980
TatI WGTACW 3 cut(s) 102, 390, 423
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 6 cut(s) 1131, 1292, 1402, 1616, 1688, 1799
Tru1I TTAA 5 cut(s) 1085, 1446, 1749, 1871, 1881
Tru9I TTAA 5 cut(s) 1085, 1446, 1749, 1871, 1881
TscAI CASTG 7 cut(s) 483, 642, 889, 967, 1044, 1489, 1780
TseFI GTSAC 1 cut(s) 1326
TseI GCWGC 5 cut(s) 1417, 1781, 1849, 1876, 2030
Tsp45I GTSAC 1 cut(s) 1326
TspGWI ACGGA 4 cut(s) 179, 372, 739, 1955
TspMI CCCGGG 2 cut(s) 159, 918
TspRI CASTG 7 cut(s) 483, 642, 889, 967, 1044, 1489, 1780
Van91I CCANNNNNTGG 2 cut(s) 153, 1097
Vha464I CTTAAG 2 cut(s) 1445, 1748
VpaK11BI GGWCC 5 cut(s) 67, 156, 380, 544, 1891
XapI RAATTY 2 cut(s) 439, 1712
XceI RCATGY 3 cut(s) 778, 1057, 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 1529
XmaI CCCGGG 2 cut(s) 159, 918
XmaJI CCTAGG 1 cut(s) 1135
XmiI GTMKAC 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 1245
XspI CTAG 4 cut(s) 1064, 1136, 1160, 1904
Zsp2I ATGCAT 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.