pycom15g09130

BAH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004827
Physical Location & Seq
Forward (+)
5892926 .. 5899864
6939 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2181 bp
ATGGAACAAGATACACGGACTGAAAAGCTTGAATTTACATGGGGAAAGAAGAAAGGAAAGGGAGGGAAAAATAAGGACGTTCAGTTTTACGAATCTTTTACTTTTGATGGTGAAGAGTACACGCTGTATGATTGCGTTTATCTTTACAAGGAAGATGAACCTGAACCTGAGATTGGAAAGCTAATAAAAATATGGGAAACTGGTGAGAAGGCAAAGAAAGTTAAAGTTCTATGGTTTTTTCGTCCTTGTGAGATTTCAAATTTTCTTGGAGGTGAAGAGGTACTTGAGAATGAGTTGTTTTTGGCATCCGGTGATGGTGTGGGCCTTGCGAATCTTAATCCATTGGAAGCCATTGCTGGAAAATGCAATGTTCTTTGCATTTCAAAGGACAAGGAAAATCCTCAACCATCAGACGAAGAGCTTCAAATGGCCGAATTTGTGTTTCGTCGAACCTTTGATGTTGGGCTGCAAAAAATCACTGACAAGATAGAGGGAGCAATTGCTGGGATTGATGTTAAATTCATGTTTAACAGAAAGGATATTCAGAAGCCTGGTGGCGTTCTGAAAGTTGATTTAGGAAAAAATGAAGTTTGTGGGAATTCCATAGCAAGTAATGAAACAGTGGTTCTATCAAACAAAAACTCATTTAAAGAAAATATCACTTTAGAGACAAATGGAAATATTGTTGATTCGTCAACACTAGAAAATGGTGATTTGGTTAAGCATAAACCATCACTTGTAGAAAAACCTGCTTATGGTGTAGGTTTAAATTCAAATGAAAAGGATAAAATGAATGAAAAACAGGAACATGTGTCAAATCCCAAGGTCTTGTTGAGTTCTGAAGTTAAAAGTGATGAAGGTGAGGTTAAGCGTGGTAAAGTTCATGCACAAGAAGTTGAAGTGGAAGAAAAAGTGACGTTCACTAAGGATAACGTTGATTCGGATAATAGGCCAACCAAGAAGGCGAAGCTTGATGATGATAAAGGTAGTGAGCAAATACTTGCGGAGGTGGAAAGAAAGAAAAAATGTACCAATGTTTGTGATCCAAAGGCAAAGAATGACACTTCAATTGAAGCGGTCAATGACAAAAAGAATAGTAGTGACCTGAATTGTATGAATGTTACAAAGGCTGTATCCCCAAAGGTTCCTGTTGAAGTGGACCATGGCCAATCTAAAAAGCCAAAGCTTGACACTTCAATTGAAGTGCCCAATGACAAAAGCAAAAGTAGTGACCTAAAGCGTGTGAATGCTACAAAAGTTTTATCATCGACTACCTCTGCTCTTGATGATGAATCCAAACATAAGTGTGTAGAGGATTCTCTTGGAACAAACAATGCTTTTCTCAAGAAGATGAAGCCTGATGATAAGGCAATGACCATTTCCAAAGGCAACAATGGCAAGTTGCCTAAAGCATCTCAACGTAAAGTCAAACATGTAGAGGATTCTCGTGGAGCAAATGAAGAGTCTTGCAAGAAGATAAAGCTCGATGAGAAATCCATGGCACTTTCTGATGGCAAGTTGCCTAAAGTACCTCCTACACAATCTCAAAGTATGGTCGAAAATGTTGATGGCCAAGAAGTTACTCGACGTCCCGATGTTGACAGAAGAACATGGTTCAAGGGATTTCCTTGGGAGGATAGAATTCAGGCTGCACATGAGCAAGGCACCCTTGTTCTGCTCCAGAATTTGGATCCAGCATACACTTCAGCTCTAGTGGAGGACATACTATGGCATGGTTTTAAGGAGAGCTGCACGGCTAAGATGATTCAGCGGACCGCAAATTCTAGTCCTCACTATGGACAAGCTCTTGTTATTCTCAAAACTAGGGAAGCAGCACAAAAGGTTGTTAGAGAATTGGATAAGGGATGTTTATTGTTGTCAAATGGAAGGCCTCTTGTTGGCAGCTTTGGAACTCCTTGTTCCTCAGAAAAGAAGGCACCCTTTTTTGGTCATCTTACTATTGAGAAACTACGGCACCAAAATGCACGGGAAATGAAAGAAGCCATATCTACTTCACATTGTTCCCAGCCCAACACTATTGAATACGATATGGCCATGGAGTGGTGTTTACAACAAGAAAGATCAGATCTCTTGTGGAGGAACTTATATAAGCAACAAGGAAAGGAGTTGAGAAAACTCAAAGCGGAACTTAAACTGAAACCTGCACTTAAGAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAH RRM_1

Protein Analysis

727

Amino Acids

81.36

Weight (kDa)

7.97

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 39 - 151 1.6e-11 BAH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1591
Acc36I ACCTGC 2 cut(s) 757, 2170
AccB1I GGYRCC 3 cut(s) 1664, 1936, 1974
AccB7I CCANNNNNTGG 2 cut(s) 1687, 2061
AciI CCGC 5 cut(s) 1004, 1076, 1771, 1776, 2144
AclI AACGTT 1 cut(s) 933
AclWI GGATC 3 cut(s) 1037, 1685, 1698
AcoI YGGCCR 4 cut(s) 429, 1165, 1570, 2052
AcsI RAATTY 9 cut(s) 32, 259, 434, 518, 598, 769, 1641, 1684, 1780
AcuI CTGAAG 2 cut(s) 861, 1689
AcyI GRCGYC 1 cut(s) 1588
AfaI GTAC 4 cut(s) 119, 282, 1030, 1530
AfiI CCNNNNNNNGG 7 cut(s) 173, 755, 1687, 1796, 1898, 1946, 2061
AflII CTTAAG 1 cut(s) 2168
AflIII ACRYGT 2 cut(s) 808, 1432
AjnI CCWGG 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
Alw26I GTCTC 1 cut(s) 662
AlwI GGATC 3 cut(s) 1037, 1685, 1698
AoxI GGCC 7 cut(s) 322, 429, 950, 1165, 1570, 1889, 2052
ApeKI GCWGC 5 cut(s) 466, 1649, 1749, 1832, 1902
ApoI RAATTY 9 cut(s) 32, 259, 434, 518, 598, 769, 1641, 1684, 1780
ArsI GACNNNNNNTTYG 2 cut(s) 1448, 1480
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 322, 1159, 1773
AsuHPI GGTGA 6 cut(s) 122, 215, 284, 323, 722, 872
AvaII GGWCC 2 cut(s) 1159, 1773
BaeGI GKGCMC 1 cut(s) 1209
BalI TGGCCA 3 cut(s) 1167, 1572, 2054
BamHI GGATCC 1 cut(s) 1690
BanI GGYRCC 3 cut(s) 1664, 1936, 1974
BauI CACGAG 1 cut(s) 1446
BbvI GCAGC 5 cut(s) 453, 1636, 1736, 1844, 1914
BccI CCATC 6 cut(s) 101, 308, 415, 739, 1505, 1562
BceAI ACGGC 2 cut(s) 1770, 1988
BciT130I CCWGG 1 cut(s) 552
BciVI GTATCC 1 cut(s) 1144
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 4 cut(s) 701, 1712, 1785, 1824
BfrI CTTAAG 1 cut(s) 2168
BfuAI ACCTGC 2 cut(s) 757, 2170
BfuI GTATCC 1 cut(s) 1144
BglII AGATCT 1 cut(s) 2086
BisI GCNGC 5 cut(s) 467, 1650, 1750, 1833, 1903
BlsI GCNGC 5 cut(s) 468, 1651, 1751, 1834, 1904
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 1159, 1773
BmgT120I GGNCC 3 cut(s) 322, 1159, 1773
BmiI GGNNCC 5 cut(s) 1146, 1666, 1692, 1938, 1976
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 314, 1421
BpmI CTGGAG 1 cut(s) 1664
BpuEI CTTGAG 2 cut(s) 305, 1328
BsaHI GRCGYC 1 cut(s) 1588
BsaJI CCNNGG 5 cut(s) 822, 1162, 1497, 1628, 2055
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 7 cut(s) 173, 755, 1687, 1796, 1898, 1946, 2061
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 3 cut(s) 351, 373, 1377
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 5 cut(s) 822, 1162, 1497, 1628, 2055
BseGI GGATG 2 cut(s) 305, 1871
BseLI CCNNNNNNNGG 7 cut(s) 173, 755, 1687, 1796, 1898, 1946, 2061
BseMI GCAATG 3 cut(s) 351, 373, 1377
BseMII CTCAG 2 cut(s) 159, 1938
BseNI ACTGG 1 cut(s) 205
BseSI GKGCMC 1 cut(s) 1209
BseXI GCAGC 5 cut(s) 453, 1636, 1736, 1844, 1914
BseYI CCCAGC 2 cut(s) 503, 2025
BsgI GTGCAG 3 cut(s) 1635, 1735, 2148
BshFI GGCC 7 cut(s) 324, 431, 952, 1167, 1572, 1891, 2054
BshNI GGYRCC 3 cut(s) 1664, 1936, 1974
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 1575
BslI CCNNNNNNNGG 7 cut(s) 173, 755, 1687, 1796, 1898, 1946, 2061
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 1575
BsmI GAATGC 1 cut(s) 1252
BsnI GGCC 7 cut(s) 324, 431, 952, 1167, 1572, 1891, 2054
Bsp1286I GDGCHC 1 cut(s) 1209
Bsp143I GATC 4 cut(s) 1042, 1690, 2081, 2086
Bsp19I CCATGG 3 cut(s) 1162, 1497, 2055
BspACI CCGC 5 cut(s) 1004, 1076, 1771, 1776, 2144
BspANI GGCC 7 cut(s) 324, 431, 952, 1167, 1572, 1891, 2054
BspCNI CTCAG 2 cut(s) 160, 1937
BspLI GGNNCC 5 cut(s) 1146, 1666, 1692, 1938, 1976
BspMI ACCTGC 2 cut(s) 757, 2170
BspPI GGATC 3 cut(s) 1037, 1685, 1698
BspQI GCTCTTC 1 cut(s) 411
BspT107I GGYRCC 3 cut(s) 1664, 1936, 1974
BspTI CTTAAG 1 cut(s) 2168
BsrDI GCAATG 3 cut(s) 351, 373, 1377
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 5 cut(s) 822, 1162, 1497, 1628, 2055
BssMI GATC 4 cut(s) 1042, 1690, 2081, 2086
BssNI GRCGYC 1 cut(s) 1588
BssSI CACGAG 1 cut(s) 1446
BssT1I CCWWGG 5 cut(s) 822, 1162, 1497, 1628, 2055
Bst2BI CACGAG 1 cut(s) 1446
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 622
Bst6I CTCTTC 4 cut(s) 108, 270, 411, 1455
BstACI GRCGYC 1 cut(s) 1588
BstAFI CTTAAG 1 cut(s) 2168
BstDEI CTNAG 4 cut(s) 168, 924, 1758, 1924
BstDSI CCRYGG 3 cut(s) 1162, 1497, 2055
BstF5I GGATG 2 cut(s) 305, 1871
BstKTI GATC 4 cut(s) 1045, 1693, 2084, 2089
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 4 cut(s) 1042, 1690, 2081, 2086
BstMWI GCNNNNNNNGC 1 cut(s) 1395
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 2 cut(s) 812, 1436
BstSCI CCNGG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 1209
BstV1I GCAGC 5 cut(s) 453, 1636, 1736, 1844, 1914
BstX2I RGATCY 2 cut(s) 1690, 2086
BstYI RGATCY 2 cut(s) 1690, 2086
BsuI GTATCC 1 cut(s) 1144
BsuRI GGCC 7 cut(s) 324, 431, 952, 1167, 1572, 1891, 2054
BtgI CCRYGG 3 cut(s) 1162, 1497, 2055
BtsCI GGATG 2 cut(s) 305, 1871
BtsIMutI CAGTG 2 cut(s) 477, 627
BveI ACCTGC 2 cut(s) 757, 2170
Cfr13I GGNCC 3 cut(s) 322, 1159, 1773
CpoI CGGWCCG 1 cut(s) 1773
Csp6I GTAC 4 cut(s) 118, 281, 1029, 1529
CspI CGGWCCG 1 cut(s) 1773
CviQI GTAC 4 cut(s) 118, 281, 1029, 1529
DdeI CTNAG 4 cut(s) 168, 924, 1758, 1924
DpnI GATC 4 cut(s) 1044, 1692, 2083, 2088
DpnII GATC 4 cut(s) 1042, 1690, 2081, 2086
DraI TTTAAA 2 cut(s) 649, 768
EaeI YGGCCR 4 cut(s) 429, 1165, 1570, 2052
Eam1104I CTCTTC 4 cut(s) 108, 270, 411, 1455
EarI CTCTTC 4 cut(s) 108, 270, 411, 1455
Eco130I CCWWGG 5 cut(s) 822, 1162, 1497, 1628, 2055
Eco147I AGGCCT 1 cut(s) 1891
Eco47I GGWCC 2 cut(s) 1159, 1773
Eco57I CTGAAG 2 cut(s) 861, 1689
EcoRI GAATTC 2 cut(s) 598, 1641
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 5 cut(s) 822, 1162, 1497, 1628, 2055
ErhI CCWWGG 5 cut(s) 822, 1162, 1497, 1628, 2055
FalI AAGNNNNNCTT 8 cut(s) 267, 299, 1653, 1685, 1925, 1957, 2133, 2165
FaqI GGGAC 1 cut(s) 1575
Fnu4HI GCNGC 5 cut(s) 467, 1650, 1750, 1833, 1903
FokI GGATG 2 cut(s) 292, 1878
Fsp4HI GCNGC 5 cut(s) 467, 1650, 1750, 1833, 1903
FspBI CTAG 4 cut(s) 701, 1712, 1785, 1824
GluI GCNGC 5 cut(s) 467, 1650, 1750, 1833, 1903
GsaI CCCAGC 2 cut(s) 507, 2029
GsuI CTGGAG 1 cut(s) 1664
HaeIII GGCC 7 cut(s) 324, 431, 952, 1167, 1572, 1891, 2054
HapII CCGG 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 1588
HincII GTYRAC 2 cut(s) 696, 1600
HindII GTYRAC 2 cut(s) 696, 1600
HindIII AAGCTT 3 cut(s) 26, 968, 1184
HinfI GANTC 9 cut(s) 92, 331, 689, 938, 1292, 1316, 1442, 1463, 1765
HpaII CCGG 1 cut(s) 309
HphI GGTGA 6 cut(s) 122, 215, 284, 323, 722, 872
Hpy166II GTNNAC 6 cut(s) 120, 696, 921, 1159, 1600, 2069
Hpy188I TCNGA 8 cut(s) 412, 546, 564, 841, 943, 1510, 1927, 2086
Hpy188III TCNNGA 4 cut(s) 1283, 1345, 1592, 1681
Hpy8I GTNNAC 6 cut(s) 120, 696, 921, 1159, 1600, 2069
Hpy99I CGWCG 2 cut(s) 450, 1590
HpyAV CCTTC 5 cut(s) 202, 851, 955, 1881, 1927
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4IV ACGT 5 cut(s) 78, 917, 933, 1420, 1588
HpyCH4V TGCA 9 cut(s) 366, 378, 469, 887, 1470, 1652, 1752, 1985, 2165
HpyF10VI GCNNNNNNNGC 1 cut(s) 1395
HpyF3I CTNAG 4 cut(s) 168, 924, 1758, 1924
HpySE526I ACGT 5 cut(s) 78, 917, 933, 1420, 1588
Hsp92I GRCGYC 1 cut(s) 1588
Kzo9I GATC 4 cut(s) 1042, 1690, 2081, 2086
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 494, 1451, 1683
Lsp1109I GCAGC 5 cut(s) 453, 1636, 1736, 1844, 1914
LweI GCATC 2 cut(s) 314, 1421
MaeI CTAG 4 cut(s) 701, 1712, 1785, 1824
MaeII ACGT 5 cut(s) 78, 917, 933, 1420, 1588
MaeIII GTNAC 5 cut(s) 913, 1100, 1120, 1229, 1579
MalI GATC 4 cut(s) 1044, 1692, 2083, 2088
MboI GATC 4 cut(s) 1042, 1690, 2081, 2086
MfeI CAATTG 3 cut(s) 498, 1068, 1197
MflI RGATCY 2 cut(s) 1690, 2086
MhlI GDGCHC 1 cut(s) 1209
MlsI TGGCCA 3 cut(s) 1167, 1572, 2054
MluNI TGGCCA 3 cut(s) 1167, 1572, 2054
MlyI GAGTC 1 cut(s) 1472
Mox20I TGGCCA 3 cut(s) 1167, 1572, 2054
MroXI GAANNNNTTC 1 cut(s) 420
MscI TGGCCA 3 cut(s) 1167, 1572, 2054
MslI CAYNNNNRTG 2 cut(s) 1305, 1980
Msp20I TGGCCA 3 cut(s) 1167, 1572, 2054
MspA1I CMGCKG 1 cut(s) 1771
MspCI CTTAAG 1 cut(s) 2168
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 3 cut(s) 498, 1068, 1197
Mva1269I GAATGC 1 cut(s) 1252
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 1395
NcoI CCATGG 3 cut(s) 1162, 1497, 2055
NdeII GATC 4 cut(s) 1042, 1690, 2081, 2086
NlaIV GGNNCC 5 cut(s) 1146, 1666, 1692, 1938, 1976
NmuCI GTSAC 3 cut(s) 913, 1100, 1229
NspI RCATGY 2 cut(s) 812, 1436
PceI AGGCCT 1 cut(s) 1891
PciI ACATGT 2 cut(s) 808, 1432
PciSI GCTCTTC 1 cut(s) 411
PctI GAATGC 1 cut(s) 1252
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 8 cut(s) 92, 331, 689, 938, 1292, 1316, 1442, 1765
PflMI CCANNNNNTGG 2 cut(s) 1687, 2061
PkrI GCNGC 5 cut(s) 468, 1651, 1751, 1834, 1904
PleI GAGTC 1 cut(s) 1471
PpsI GAGTC 1 cut(s) 1471
PscI ACATGT 2 cut(s) 808, 1432
Psp1406I AACGTT 1 cut(s) 933
Psp6I CCWGG 1 cut(s) 550
PspFI CCCAGC 2 cut(s) 503, 2025
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 5 cut(s) 1146, 1666, 1692, 1938, 1976
PspPI GGNCC 3 cut(s) 322, 1159, 1773
PsuI RGATCY 2 cut(s) 1690, 2086
RsaI GTAC 4 cut(s) 119, 282, 1030, 1530
RsaNI GTAC 4 cut(s) 118, 281, 1029, 1529
RseI CAYNNNNRTG 2 cut(s) 1305, 1980
Rsr2I CGGWCCG 1 cut(s) 1773
RsrII CGGWCCG 1 cut(s) 1773
SapI GCTCTTC 1 cut(s) 411
SatI GCNGC 5 cut(s) 467, 1650, 1750, 1833, 1903
Sau3AI GATC 4 cut(s) 1042, 1690, 2081, 2086
Sau96I GGNCC 3 cut(s) 322, 1159, 1773
SchI GAGTC 1 cut(s) 1472
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 1 cut(s) 1209
SfaNI GCATC 2 cut(s) 314, 1421
SinI GGWCC 2 cut(s) 1159, 1773
SmiMI CAYNNNNRTG 2 cut(s) 1305, 1980
SmlI CTYRAG 3 cut(s) 284, 1343, 2168
SmoI CTYRAG 3 cut(s) 284, 1343, 2168
SseBI AGGCCT 1 cut(s) 1891
SsiI CCGC 5 cut(s) 1004, 1076, 1771, 1776, 2144
SspI AATATT 1 cut(s) 682
SspMI CTAG 4 cut(s) 701, 1712, 1785, 1824
StuI AGGCCT 1 cut(s) 1891
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 5 cut(s) 822, 1162, 1497, 1628, 2055
TaaI ACNGT 1 cut(s) 622
TaiI ACGT 5 cut(s) 81, 920, 936, 1423, 1591
TaqI TCGA 5 cut(s) 448, 1268, 1485, 1557, 1585
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 8 cut(s) 92, 331, 689, 938, 1292, 1316, 1442, 1765
TscAI CASTG 2 cut(s) 484, 627
TseFI GTSAC 3 cut(s) 913, 1100, 1229
TseI GCWGC 5 cut(s) 466, 1649, 1749, 1832, 1902
Tsp45I GTSAC 3 cut(s) 913, 1100, 1229
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 484, 627
Van91I CCANNNNNTGG 2 cut(s) 1687, 2061
Vha464I CTTAAG 1 cut(s) 2168
VpaK11BI GGWCC 2 cut(s) 1159, 1773
XapI RAATTY 9 cut(s) 32, 259, 434, 518, 598, 769, 1641, 1684, 1780
XceI RCATGY 2 cut(s) 812, 1436
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 4 cut(s) 701, 1712, 1785, 1824
ZraI GACGTC 1 cut(s) 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.