pycom15g10030

RNA methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015123
Physical Location & Seq
Forward (+)
6555853 .. 6556491
639 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGGACCTTATAAGGTCCGATGATTGGGTGGTGCTGTTGGATGAGCGTGGGAAAGACATAGGGTCGGAGCGGATGGCAGAGTTGGTGGGGGATGCAGGGAATACAGGAGCTTCAAGACTATCCTTCTGCGTCGGTGGACCTTACGGCCATGGAAAACAATTGCGAGAACGTGCTGATGTTTGTATCAAGTTGTCTTCTATGGTTTTAAACCATCAAATTGCATTAGTTGTTCTTGTGGAACAACTTTATAGGTCATGGACTATTCTGAAAGGACAGAACTATCATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPOUT_MTase

Protein Analysis

97

Amino Acids

10.76

Weight (kDa)

6.82

Isoelectric Point (pI)

18.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPOUT_MTase PF02590 4 - 95 5.1e-33 Predicted SPOUT methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10620 AT5G10620
fragaria_vesca FvH4_2g30670
malus_domestica MD15G1110100.v1.1
prunus_persica Prupe.1G462300_v2.0.a1
pyrus_communis pycom15g10030
rosa_chinensis RchiOBHm_Chr6g0312221
rosa_laevigata RLG00000010341
rosa_multiflora Rmu_sc0010924.1_g000004
rosa_roxburghii Rroxscaffold_7G00156940
rosa_rugosa Rorug06G0394200
rosa_samantha Rh6AG511100 Rh6BG522100 Rh6CG527900 Rh6DG513300
rosa_wichuraiana Rw6G044450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 70
AciI CCGC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 1 cut(s) 114
AhdI GACNNNNNGTC 1 cut(s) 61
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AoxI GGCC 1 cut(s) 145
AspS9I GGNCC 3 cut(s) 4, 15, 137
AvaII GGWCC 3 cut(s) 4, 15, 137
BbsI GAAGAC 1 cut(s) 186
BccI CCATC 2 cut(s) 67, 219
BceAI ACGGC 1 cut(s) 160
Bme18I GGWCC 3 cut(s) 4, 15, 137
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgT120I GGNCC 3 cut(s) 4, 15, 137
BmsI GCATC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 3 cut(s) 46, 78, 97
BseLI CCNNNNNNNGG 1 cut(s) 24
BshFI GGCC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 24
BsnI GGCC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 148
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 3 cut(s) 46, 78, 97
BstV2I GAAGAC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 3 cut(s) 46, 78, 97
Cfr13I GGNCC 3 cut(s) 4, 15, 137
CseI GACGC 1 cut(s) 118
CviAII CATG 2 cut(s) 149, 255
CviJI RGCY 2 cut(s) 110, 147
CviKI_1 RGCY 2 cut(s) 110, 147
DraI TTTAAA 1 cut(s) 207
DriI GACNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 148
Eco47I GGWCC 3 cut(s) 4, 15, 137
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 152, 258
FaiI YATR 6 cut(s) 11, 59, 150, 200, 249, 256
FatI CATG 2 cut(s) 148, 254
FokI GGATG 3 cut(s) 53, 85, 104
HaeIII GGCC 1 cut(s) 147
HgaI GACGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 152, 258
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 3 cut(s) 19, 67, 267
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 95, 221
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 152, 258
LmnI GCTCC 2 cut(s) 67, 107
LpnPI CCDG 2 cut(s) 81, 90
LweI GCATC 1 cut(s) 82
MaeII ACGT 1 cut(s) 169
MbiI CCGCTC 1 cut(s) 70
MboII GAAGA 1 cut(s) 186
MfeI CAATTG 1 cut(s) 158
MluCI AATT 2 cut(s) 158, 216
MmeI TCCRAC 2 cut(s) 18, 45
MseI TTAA 1 cut(s) 206
MunI CAATTG 1 cut(s) 158
NcoI CCATGG 1 cut(s) 148
NlaIII CATG 2 cut(s) 152, 258
PsiI TTATAA 1 cut(s) 11
PspPI GGNCC 3 cut(s) 4, 15, 137
SaqAI TTAA 1 cut(s) 206
Sau96I GGNCC 3 cut(s) 4, 15, 137
SetI ASST 6 cut(s) 9, 17, 112, 142, 172, 254
SfaNI GCATC 1 cut(s) 82
SinI GGWCC 3 cut(s) 4, 15, 137
Sse9I AATT 2 cut(s) 158, 216
SsiI CCGC 1 cut(s) 70
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 172
TasI AATT 2 cut(s) 158, 216
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
VpaK11BI GGWCC 3 cut(s) 4, 15, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.