pycom15g11630

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012579
Physical Location & Seq
Forward (+)
7885916 .. 7887127
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGGCTGCTATTTCACAAGGAGATGTGATTTACTCCATTCTACAATATCTTGATTTCAACAATTTTGGACAAACAGCTCGAACACTTGAGAGGGAATCCGGCTTGTTCTTCAGCTTGCCATATTTTGAAGGATGTTTCATTCATGGAGAGTTTGACGAGGCAGAAGAGTACTTCAACGGCTTCACCACAGTGCATGACAACATCTATTCAACGAAGGTCATTTTTGAGCTTCGTTGGCACAAGTTTTTGGAGGCACTGGACGATAATAACTATGAGGAAGCAAATGAACTTCTCCATGAAGAACTCACAACCTTCCTGCCGTACAATCAAAACCTGATTGCACAGGCGACCGAGATTATGAACTTACACGACGTTAGAATCTACCTACGACTTCAGGGCTATGGAGACCTCATAGAAGCAAGAACTGCGGCGATGATAGATATAAGGAGATGTTTGGAGGCGAATCCACTGCTGGTTGGGAAAATTCGATATCGAATTCCGAACCACTACAGTAGCGGCGGCCTTGCTAATCTAGCACTCCCTCCACCACCCGCAATTCTGCTAATTCGACGAGCATCCATAGCAGTGTTACAACCTCCAACAACTCCGTTGCTTGTACAAGTCCATTTCAGGCTTATTCCAGGCTTCGGATATTGGGTCGTAATTATATGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 ko04934 map04137 map04140 map04934
Pfam Domains
Protein Families
WD40

Protein Analysis

226

Amino Acids

25.8

Weight (kDa)

5.1

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR1-like_2nd PF21889 39 - 161 8.9e-30 TPR1-like, CTLH-containing domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 428, 516, 519, 552
AcsI RAATTY 2 cut(s) 483, 495
AcuI CTGAAG 2 cut(s) 94, 377
AfaI GTAC 3 cut(s) 170, 323, 618
AfiI CCNNNNNNNGG 1 cut(s) 647
AgsI TTSAA 4 cut(s) 58, 128, 175, 210
AjnI CCWGG 1 cut(s) 640
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 3 cut(s) 77, 114, 229
AluI AGCT 3 cut(s) 77, 114, 229
Alw26I GTCTC 1 cut(s) 399
AoxI GGCC 1 cut(s) 520
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 483, 495
AsuHPI GGTGA 1 cut(s) 175
BceAI ACGGC 2 cut(s) 193, 304
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 1 cut(s) 533
BfmI CTRYAG 1 cut(s) 508
BisI GCNGC 4 cut(s) 6, 429, 517, 520
BlsI GCNGC 4 cut(s) 7, 430, 518, 521
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 642
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 399
Bsc4I CCNNNNNNNGG 1 cut(s) 647
Bse1I ACTGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 642
BseGI GGATG 2 cut(s) 137, 575
BseLI CCNNNNNNNGG 1 cut(s) 647
BseNI ACTGG 1 cut(s) 261
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 1 cut(s) 522
BsiEI CGRYCG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 647
BsmAI GTCTC 1 cut(s) 399
BsnI GGCC 1 cut(s) 522
Bso31I GGTCTC 1 cut(s) 399
Bsp1407I TGTACA 1 cut(s) 616
BspACI CCGC 4 cut(s) 428, 516, 519, 552
BspANI GGCC 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 399
BsrGI TGTACA 1 cut(s) 616
BsrI ACTGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 2 cut(s) 190, 512
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 425
BstAUI TGTACA 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 116
BstF5I GGATG 2 cut(s) 137, 575
BstMAI GTCTC 1 cut(s) 399
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 4 cut(s) 235, 425, 533, 581
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 640
BstSFI CTRYAG 1 cut(s) 508
BsuRI GGCC 1 cut(s) 522
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 2 cut(s) 137, 575
BtsI GCAGTG 2 cut(s) 467, 591
BtsIMutI CAGTG 4 cut(s) 195, 254, 467, 591
Cac8I GCNNGC 1 cut(s) 116
Csp6I GTAC 3 cut(s) 169, 322, 617
CviAII CATG 3 cut(s) 143, 194, 296
CviQI GTAC 3 cut(s) 169, 322, 617
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 94, 377
EcoRI GAATTC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 640
EcoRV GATATC 1 cut(s) 491
FaeI CATG 3 cut(s) 146, 197, 299
FatI CATG 3 cut(s) 142, 193, 295
FauI CCCGC 1 cut(s) 559
Fnu4HI GCNGC 4 cut(s) 6, 429, 517, 520
FokI GGATG 2 cut(s) 144, 562
Fsp4HI GCNGC 4 cut(s) 6, 429, 517, 520
FspBI CTAG 1 cut(s) 533
GluI GCNGC 4 cut(s) 6, 429, 517, 520
HaeIII GGCC 1 cut(s) 522
HapII CCGG 1 cut(s) 99
Hin1II CATG 3 cut(s) 146, 197, 299
HinfI GANTC 3 cut(s) 95, 378, 463
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 501, 650
Hpy188III TCNNGA 1 cut(s) 50
Hpy99I CGWCG 2 cut(s) 374, 573
HpyAV CCTTC 3 cut(s) 122, 208, 322
HpyCH4III ACNGT 2 cut(s) 190, 512
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 2 cut(s) 193, 341
HpyF10VI GCNNNNNNNGC 4 cut(s) 235, 425, 533, 581
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 3 cut(s) 146, 197, 299
LweI GCATC 1 cut(s) 584
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 1 cut(s) 588
MboII GAAGA 3 cut(s) 100, 176, 311
MluCI AATT 7 cut(s) 61, 483, 495, 555, 564, 663, 673
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 8 cut(s) 84, 151, 244, 268, 419, 451, 552, 606
MslI CAYNNNNRTG 2 cut(s) 188, 584
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 4 cut(s) 235, 425, 533, 581
NlaIII CATG 3 cut(s) 146, 197, 299
OliI CACNNNNGTG 1 cut(s) 188
PfeI GAWTC 3 cut(s) 95, 378, 463
PkrI GCNGC 4 cut(s) 7, 430, 518, 521
Psp6I CCWGG 1 cut(s) 640
PspGI CCWGG 1 cut(s) 640
RsaI GTAC 3 cut(s) 170, 323, 618
RsaNI GTAC 3 cut(s) 169, 322, 617
RseI CAYNNNNRTG 2 cut(s) 188, 584
SatI GCNGC 4 cut(s) 6, 429, 517, 520
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 642
SfaNI GCATC 1 cut(s) 584
SfcI CTRYAG 1 cut(s) 508
SmiMI CAYNNNNRTG 2 cut(s) 188, 584
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 7 cut(s) 61, 483, 495, 555, 564, 663, 673
SsiI CCGC 4 cut(s) 428, 516, 519, 552
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 190, 512
TaiI ACGT 1 cut(s) 375
TaqI TCGA 4 cut(s) 79, 487, 493, 568
TaqII GACCGA 1 cut(s) 365
TasI AATT 7 cut(s) 61, 483, 495, 555, 564, 663, 673
TatI WGTACW 2 cut(s) 168, 616
TauI GCSGC 3 cut(s) 431, 519, 522
TfiI GAWTC 3 cut(s) 95, 378, 463
TscAI CASTG 4 cut(s) 195, 261, 474, 591
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 127, 131, 300, 312, 374
TspGWI ACGGA 1 cut(s) 597
TspRI CASTG 4 cut(s) 195, 261, 474, 591
XapI RAATTY 2 cut(s) 483, 495
XspI CTAG 1 cut(s) 533
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.