Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007642

Physical Location & Seq

Genomic Coordinates Reverse (-)

7972916 .. 7973659

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGTACCACAACCACCTCTCCCAGCCTCTCCACCACTTCACCGACCAAACCCAGCAACAGCATCAGCAATATCAATCGGACCAAACCGACCCGACTTCCAAGCCCCCCGAGCCCCACCACCCATTTCAGCCCGCCCCCAATTGGCTCCACTCCGCCCTCCTCCGCAACTTCACCAACGCCGACACCAACCCGACCAATACCAACAACGCAAACAACCACGGCGGCGGTTCATCCAATTTCCTCAACCTCCACGTTACCGCCTCCGACTCCGTGGCCTCCCAAGCCTCCAACCAATGGCTCTCCCAGTCCCACCGTCCGATCCTCCACCGCAACCACAGCGACGTCATCGATGACGTCACCGTCGCTGGCGACTCGATGATCGCCGCGATGTCCCATGACTCCGCAGACCTCAAGCCCGACAGCAACCTCAACAAGAGCGACGGCGGAGTCGTCGAGAGCGGCATCCCAGGCGGAGGCGGAGGAGGAGACGGCGGGGTGATTAACTGGCAGAACGCGAGACACAAAGCCGAAATTCTGGCGCACCCGCTGTACGAGCCGCTGCTGTCGGCACACGTAGCGTGCCTGCGGATCGCGCCACCGGTGGACCAGCTGCCTAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTGGCTAAGTACTCCGCCTTGGGGAATGGCATGGTCGGCGATGACAAGGAGCTTGATCAGTTCATGGTAATGCTCTTTGCCTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009593 GO:0009628 GO:0009719 GO:0009720 GO:0009722 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009735 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032870 GO:0034097 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071345 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

248

Amino Acids

26.83

Weight (kDa)

5.68

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	176 - 216	4.7e-16	KNOX1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11060 AT5G25220 AT5G25220
fragaria_vesca	FvH4_2g28300 FvH4_2g28300
malus_domestica	MD08G1153600.v1.1 MD15G1130800.v1.1
prunus_persica	Prupe.1G486200_v2.0.a1 Prupe.1G486200_v2.0.a1
pyrus_communis	pycom08g13300 pycom15g11790
rosa_chinensis	RchiOBHm_Chr6g0297211
rosa_laevigata	RLG00000011621
rosa_multiflora	Rmu_co8344329.1_g000001 Rmu_sc0013249.1_g000001 Rmu_sc0029393.1_g000001
rosa_roxburghii	Rroxscaffold_7G00170780
rosa_rugosa	Rorug06G0269900 Rorug06G0270000
rosa_samantha	Rh6AG381000 Rh6BG389200 Rh6CG394400 Rh6DG381100
rosa_wichuraiana	Rw6G033180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	362, 449
AatII	GACGTC	2 cut(s)	348, 360
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	462
AccII	CGCG	3 cut(s)	389, 518, 596
AclWI	GGATC	3 cut(s)	316, 599, 629
AcsI	RAATTY	1 cut(s)	534
AcyI	GRCGYC	2 cut(s)	345, 357
AfaI	GTAC	3 cut(s)	8, 554, 665
AfiI	CCNNNNNNNGG	4 cut(s)	144, 297, 476, 675
AflIII	ACRYGT	1 cut(s)	574
AgeI	ACCGGT	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	3 cut(s)	613, 634, 706
AluI	AGCT	3 cut(s)	613, 634, 706
Alw26I	GTCTC	2 cut(s)	483, 514
AlwI	GGATC	3 cut(s)	316, 599, 629
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	562, 613
ApoI	RAATTY	1 cut(s)	534
AsiGI	ACCGGT	1 cut(s)	601
AspA2I	CCTAGG	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	544, 598
AspS9I	GGNCC	2 cut(s)	82, 607
AsuHPI	GGTGA	4 cut(s)	34, 166, 352, 511
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	82, 607
AvrII	CCTAGG	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	549, 600
BceAI	ACGGC	3 cut(s)	238, 460, 508
BciT130I	CCWGG	1 cut(s)	471
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	483, 514
BfaI	CTAG	1 cut(s)	618
BisI	GCNGC	6 cut(s)	226, 387, 463, 560, 563, 614
BlnI	CCTAGG	1 cut(s)	617
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	6 cut(s)	227, 388, 464, 561, 564, 615
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	2 cut(s)	82, 607
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	82, 607
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	471
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	73, 474
BmuI	ACTGGG	1 cut(s)	301
Bpu1102I	GCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	398
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	577
BsaHI	GRCGYC	2 cut(s)	345, 357
BsaJI	CCNNGG	5 cut(s)	220, 273, 469, 617, 672
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 297, 476, 675
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	2 cut(s)	307, 512
BseBI	CCWGG	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	5 cut(s)	220, 273, 469, 617, 672
BseGI	GGATG	2 cut(s)	233, 465
BseLI	CCNNNNNNNGG	4 cut(s)	144, 297, 476, 675
BseMII	CTCAG	2 cut(s)	644, 653
BseNI	ACTGG	2 cut(s)	307, 512
BseRI	GAGGAG	3 cut(s)	152, 498, 501
BseXI	GCAGC	2 cut(s)	549, 600
BseYI	CCCAGC	2 cut(s)	24, 54
Bsh1236I	CGCG	3 cut(s)	389, 518, 596
BshFI	GGCC	1 cut(s)	278
BshTI	ACCGGT	1 cut(s)	601
BshVI	ATCGAT	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	2 cut(s)	295, 379
BslI	CCNNNNNNNGG	4 cut(s)	144, 297, 476, 675
BsmAI	GTCTC	2 cut(s)	483, 514
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	2 cut(s)	295, 379
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	5 cut(s)	321, 381, 591, 621, 709
Bsp1720I	GCTNAGC	1 cut(s)	630
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	643, 652
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	3 cut(s)	389, 518, 596
BspLI	GGNNCC	1 cut(s)	149
BspPI	GGATC	3 cut(s)	316, 599, 629
BsrBI	CCGCTC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	2 cut(s)	307, 512
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	5 cut(s)	220, 273, 469, 617, 672
BssMI	GATC	5 cut(s)	321, 381, 591, 621, 709
BssNI	GRCGYC	2 cut(s)	345, 357
BssT1I	CCWWGG	2 cut(s)	617, 672
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	317, 364
BstACI	GRCGYC	2 cut(s)	345, 357
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	5 cut(s)	135, 370, 583, 587, 636
BstDEI	CTNAG	3 cut(s)	630, 639, 660
BstDSI	CCRYGG	2 cut(s)	220, 273
BstF5I	GGATG	2 cut(s)	233, 465
BstFNI	CGCG	3 cut(s)	389, 518, 596
BstHHI	GCGC	2 cut(s)	544, 598
BstKTI	GATC	5 cut(s)	324, 384, 594, 624, 712
BstMAI	GTCTC	2 cut(s)	483, 514
BstMBI	GATC	5 cut(s)	321, 381, 591, 621, 709
BstMWI	GCNNNNNNNGC	9 cut(s)	112, 284, 339, 471, 556, 578, 595, 635, 690
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstUI	CGCG	3 cut(s)	389, 518, 596
BstV1I	GCAGC	2 cut(s)	549, 600
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	2 cut(s)	220, 273
BtgZI	GCGATG	2 cut(s)	404, 708
BtsCI	GGATG	2 cut(s)	233, 465
Cac8I	GCNNGC	5 cut(s)	135, 370, 583, 587, 636
CfoI	GCGC	2 cut(s)	544, 598
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	82, 607
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	635
Csp6I	GTAC	3 cut(s)	7, 553, 664
CspAI	ACCGGT	1 cut(s)	601
CviAII	CATG	3 cut(s)	398, 685, 718
CviQI	GTAC	3 cut(s)	7, 553, 664
DdeI	CTNAG	3 cut(s)	630, 639, 660
DpnI	GATC	5 cut(s)	323, 383, 593, 623, 711
DpnII	GATC	5 cut(s)	321, 381, 591, 621, 709
DrdI	GACNNNNNNGTC	2 cut(s)	362, 449
DseDI	GACNNNNNNGTC	2 cut(s)	362, 449
EciI	GGCGGA	5 cut(s)	145, 462, 489, 495, 658
Eco130I	CCWWGG	2 cut(s)	617, 672
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	82, 607
Eco88I	CYCGRG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	2 cut(s)	617, 672
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	617, 672
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	3 cut(s)	401, 688, 721
FaiI	YATR	3 cut(s)	399, 686, 719
FaqI	GGGAC	2 cut(s)	295, 379
FatI	CATG	3 cut(s)	397, 684, 717
FauI	CCCGC	3 cut(s)	142, 488, 555
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	6 cut(s)	226, 387, 463, 560, 563, 614
FokI	GGATG	2 cut(s)	220, 452
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	226, 387, 463, 560, 563, 614
FspBI	CTAG	1 cut(s)	618
GlaI	GCGC	2 cut(s)	543, 597
GluI	GCNGC	6 cut(s)	226, 387, 463, 560, 563, 614
GsaI	CCCAGC	2 cut(s)	28, 58
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	602
HgaI	GACGC	1 cut(s)	635
HhaI	GCGC	2 cut(s)	544, 598
Hin1I	GRCGYC	2 cut(s)	345, 357
Hin1II	CATG	3 cut(s)	401, 688, 721
Hin6I	GCGC	2 cut(s)	542, 596
HinP1I	GCGC	2 cut(s)	542, 596
HinfI	GANTC	4 cut(s)	269, 374, 401, 450
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	4 cut(s)	34, 166, 352, 511
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	3 cut(s)	82, 268, 321
Hpy188III	TCNNGA	1 cut(s)	457
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	5 cut(s)	347, 368, 446, 458, 629
HpyCH4III	ACNGT	2 cut(s)	317, 364
HpyCH4IV	ACGT	4 cut(s)	255, 345, 357, 576
HpyF10VI	GCNNNNNNNGC	9 cut(s)	112, 284, 339, 471, 556, 578, 595, 635, 690
HpyF3I	CTNAG	3 cut(s)	630, 639, 660
HpySE526I	ACGT	4 cut(s)	255, 345, 357, 576
Hsp92I	GRCGYC	2 cut(s)	345, 357
Hsp92II	CATG	3 cut(s)	401, 688, 721
HspAI	GCGC	2 cut(s)	542, 596
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	321, 381, 591, 621, 709
LmnI	GCTCC	2 cut(s)	153, 703
Lsp1109I	GCAGC	2 cut(s)	549, 600
LweI	GCATC	2 cut(s)	73, 474
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	4 cut(s)	255, 345, 357, 576
MaeIII	GTNAC	2 cut(s)	256, 358
MalI	GATC	5 cut(s)	323, 383, 593, 623, 711
MbiI	CCGCTC	1 cut(s)	462
MboI	GATC	5 cut(s)	321, 381, 591, 621, 709
MfeI	CAATTG	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	3 cut(s)	142, 238, 534
MlyI	GAGTC	4 cut(s)	263, 368, 395, 459
MmeI	TCCRAC	2 cut(s)	291, 315
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	4 cut(s)	550, 562, 613, 634
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	3 cut(s)	389, 518, 596
MwoI	GCNNNNNNNGC	9 cut(s)	112, 284, 339, 471, 556, 578, 595, 635, 690
NdeII	GATC	5 cut(s)	321, 381, 591, 621, 709
NlaIII	CATG	3 cut(s)	401, 688, 721
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PflMI	CCANNNNNTGG	1 cut(s)	297
PinAI	ACCGGT	1 cut(s)	601
PkrI	GCNGC	6 cut(s)	227, 388, 464, 561, 564, 615
PleI	GAGTC	4 cut(s)	263, 368, 395, 458
PpsI	GAGTC	4 cut(s)	263, 368, 395, 458
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	1 cut(s)	469
PspFI	CCCAGC	2 cut(s)	24, 54
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	149
PspPI	GGNCC	2 cut(s)	82, 607
PvuII	CAGCTG	2 cut(s)	613, 634
RsaI	GTAC	3 cut(s)	8, 554, 665
RsaNI	GTAC	3 cut(s)	7, 553, 664
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	6 cut(s)	226, 387, 463, 560, 563, 614
Sau3AI	GATC	5 cut(s)	321, 381, 591, 621, 709
Sau96I	GGNCC	2 cut(s)	82, 607
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	4 cut(s)	263, 368, 395, 459
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	73, 474
SgrAI	CRCCGGYG	1 cut(s)	601
SinI	GGWCC	2 cut(s)	82, 607
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	142, 238, 534
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	2 cut(s)	617, 672
TaaI	ACNGT	2 cut(s)	317, 364
TaiI	ACGT	4 cut(s)	258, 348, 360, 579
TaqI	TCGA	4 cut(s)	351, 377, 456, 624
TasI	AATT	3 cut(s)	142, 238, 534
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	4 cut(s)	228, 389, 465, 562
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	562, 613
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	222, 706
TspGWI	ACGGA	1 cut(s)	262
Van91I	CCANNNNNTGG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	82, 607
XapI	RAATTY	1 cut(s)	534
XmaJI	CCTAGG	1 cut(s)	617
XspI	CTAG	1 cut(s)	618
ZraI	GACGTC	2 cut(s)	346, 358
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.