pycom15g11950

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006788
Physical Location & Seq
Reverse (-)
8123218 .. 8127479
4262 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1818 bp
ATGGGAGTCGAAGAAGGTAAAAGCAATGGTGGTAATATGGAATGCGAGAAGGAAGTTGAATGCTTGAAGAGTGAATCCAATGGATTTGGTTTTGGGAATTCTACTGACGTTGCGAAAGGCAGCTCTGGCGCAAGTGAGGGTGTTCGAACTTACAAGAGGCGGAGGCAGGCGAGGTTCAGTTGGGATAGCAAGTCACAGGATGATGGGGGAGCTGATGTGGAATCATCGAGTCAATTGGCAAACCAGCTTCTAAAGGAACCAGTGGGCACGGATATACACAGTAACTCTTGCGAGCAAGTCCATGTTCGAATGAACAGTTCAGATGCATGCTCAGAGAGGTACTGTACAGATGCTGTGCTGGAGAACATGTATCAGTCATTAGGCGACGGTGAAGGTGGTGTACAAGTGTGCATCCGGGAAGCACTTGCACATTTTCGAGAGATTGATCACACAACGCGAGTTAAGGAATCTGGTGATCATAATGAGGATAGGCACCGATGCTGTTTTCTGACACAGTCTATATTGAATGGATCTCAAAAGGCAGCCAGCATGAATGCTGGTGTTGTATCGAATGGATTTTCAAATAAATCAAACCATCATACAGTTACAGCGATGTGTCAGCGTGCTTTTTATAATGTTTTAGTTTCCGAAACGTTCACCTCGTTGTGCAAAGTCCTGCTGCAAAATTTTCAAGGAATCAAGGCTGACAGCGTTTTCGACTTTAGTCTCATAAACTCAAGGATGAAAAGGGGAGATTATGAGCATTCTCCAATGCTCTTCTCAAATGATATGCAACAGGTATGGAGAAAACTTCAAATGATCGGTACCGACTTGATTTCTCTTGCAAGAAACCTCTCGGACATGTCTAGGGCTTCTTACAATGAACAGGTGGGAGGTTCAGTCCGCAATACATTGAAATATGGAAAAAATGAGTTCTACCACTTGGGATCTGACTCTCACGCTAAACTGGAGCAAACAGAGGATTGTGGTGTGCACAGTGCATGCACTTGCAGGTGCTGCGGATGCCATGCAAATGGGAAGGATTGTTTAGTATGTGATTCATGTGAGGAGATGTACCATATCTCTTGCATTGAGCCTGCTGTCAAAGAAATTCCTCCAAGTTGGTATTGTGCTAGGTGCACTGCAAGTGGTATTGGATCACCCCATGAGAACTGTGTCGTGTGTGAGAAGTTGAATGTGGGCAAGACTGTAGTTGATGGTGTTGGAGGTGAAAGTGTTTCTACAGAAGAAGAAACAGTCAATGAGACAGGTGAAAATTCAAAATGGAGTGCAGATGATGGAATCCAGCTATCGGAAGAAAGCAAAAGAATTTGCAAAACTTGTGGACTTGAGGTAAAAAACAATGATAGTTTGAGGACATGTGGTCATTCATACTGCCCCAAAAAATACTACCATATGAGGTGTCTGACAACTAACCAGTTAAGATCGTACGGCCCCTGTTGGTACTGCTATTCTTGCCTATGCAGAAATTGTCTCATTGATAAAGATGATGATATGATTGTGCTTTGTGACGGTTGTGATCACGGGTACCACCTCTATTGCATGGAACCACCACGCACTTCCATTCCAGCTGGAAAATGGTTTTGCAAAAAATGTGATACCGGAATTAAGGCCATACGCAAGGCAAGAAAGGCTTATGATAAGAAAGAAAAGACACAGAGAGCGAAAAGTGAAGGTTCAAAGAAGTTGAATGAAAAAGGGGATGACAGGGAATCAGAACAAGGTAGGGGGGGAATGGAGGTCCTTCTCTGTGCGGTCCATACTCTAGATAATGAAGAGGATATGAAGAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

606

Amino Acids

67.19

Weight (kDa)

6.02

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 495 - 539 2.1e-10 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 633
AarI CACCTGC 1 cut(s) 1002
Acc36I ACCTGC 1 cut(s) 1002
Acc65I GGTACC 2 cut(s) 824, 1548
AccB1I GGYRCC 3 cut(s) 492, 824, 1548
AccII CGCG 1 cut(s) 457
AciI CCGC 4 cut(s) 160, 904, 1020, 1775
AclI AACGTT 1 cut(s) 653
AclWI GGATC 3 cut(s) 538, 955, 1165
AcsI RAATTY 5 cut(s) 97, 685, 1110, 1276, 1329
AfaI GTAC 8 cut(s) 341, 346, 402, 826, 1076, 1451, 1466, 1550
AfiI CCNNNNNNNGG 1 cut(s) 1312
AflIII ACRYGT 3 cut(s) 366, 861, 1379
AhdI GACNNNNNGTC 1 cut(s) 1383
AluBI AGCT 5 cut(s) 123, 212, 247, 1309, 1592
AluI AGCT 5 cut(s) 123, 212, 247, 1309, 1592
Alw21I GWGCWC 2 cut(s) 996, 1142
Alw26I GTCTC 3 cut(s) 731, 1259, 1499
Alw44I GTGCAC 2 cut(s) 992, 1138
AlwI GGATC 3 cut(s) 538, 955, 1165
AlwNI CAGNNNCTG 2 cut(s) 353, 1017
AoxI GGCC 2 cut(s) 1453, 1632
ApaLI GTGCAC 2 cut(s) 992, 1138
ApeKI GCWGC 4 cut(s) 120, 542, 679, 1017
ApoI RAATTY 5 cut(s) 97, 685, 1110, 1276, 1329
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
Asp718I GGTACC 2 cut(s) 824, 1548
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 1454, 1762, 1777
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 6 cut(s) 401, 485, 649, 1152, 1241, 1283
AsuII TTCGAA 2 cut(s) 145, 307
AvaII GGWCC 2 cut(s) 1762, 1777
BaeGI GKGCMC 3 cut(s) 269, 996, 1142
BanI GGYRCC 3 cut(s) 492, 824, 1548
BarI GAAGNNNNNNTAC 2 cut(s) 384, 416
Bbv12I GWGCWC 2 cut(s) 996, 1142
BbvI GCAGC 4 cut(s) 132, 554, 666, 1004
BccI CCATC 4 cut(s) 197, 603, 1211, 1292
BceAI ACGGC 1 cut(s) 1468
BclI TGATCA 3 cut(s) 445, 475, 1540
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 731, 1259, 1499
BfaI CTAG 3 cut(s) 867, 1134, 1787
BfmI CTRYAG 2 cut(s) 1209, 1242
BfuAI ACCTGC 1 cut(s) 1002
BisI GCNGC 4 cut(s) 121, 543, 680, 1018
BlsI GCNGC 4 cut(s) 122, 544, 681, 1019
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 2 cut(s) 1762, 1777
BmeRI GACNNNNNGTC 1 cut(s) 1383
BmgT120I GGNCC 3 cut(s) 1454, 1762, 1777
BmiI GGNNCC 6 cut(s) 258, 494, 826, 1456, 1550, 1569
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 5 cut(s) 313, 340, 420, 488, 1013
BoxI GACNNNNGTC 1 cut(s) 723
BpmI CTGGAG 2 cut(s) 380, 989
Bpu14I TTCGAA 2 cut(s) 145, 307
BpuEI CTTGAG 2 cut(s) 721, 1370
BpuMI CCSGG 1 cut(s) 416
BsaWI WCCGGW 1 cut(s) 1622
BsaXI ACNNNNNCTCC 6 cut(s) 201, 231, 353, 383, 885, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 1312
Bse1I ACTGG 3 cut(s) 260, 972, 1438
Bse3DI GCAATG 1 cut(s) 31
BseGI GGATG 5 cut(s) 205, 411, 747, 1028, 1729
BseLI CCNNNNNNNGG 1 cut(s) 1312
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 260, 972, 1438
BseRI GAGGAG 1 cut(s) 1082
BseSI GKGCMC 3 cut(s) 269, 996, 1142
BseXI GCAGC 4 cut(s) 132, 554, 666, 1004
BsgI GTGCAG 1 cut(s) 1311
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 1455, 1634
BshNI GGYRCC 3 cut(s) 492, 824, 1548
BsiHKAI GWGCWC 2 cut(s) 996, 1142
BsiSI CCGG 2 cut(s) 415, 1623
BsiWI CGTACG 1 cut(s) 1449
BslI CCNNNNNNNGG 1 cut(s) 1312
BsmAI GTCTC 3 cut(s) 731, 1259, 1499
BsmI GAATGC 4 cut(s) 47, 65, 559, 763
BsnI GGCC 2 cut(s) 1455, 1634
Bsp119I TTCGAA 2 cut(s) 145, 307
Bsp1286I GDGCHC 3 cut(s) 269, 996, 1142
Bsp1407I TGTACA 2 cut(s) 344, 400
Bsp143I GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
BspACI CCGC 4 cut(s) 160, 904, 1020, 1775
BspANI GGCC 2 cut(s) 1455, 1634
BspCNI CTCAG 1 cut(s) 344
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 6 cut(s) 258, 494, 826, 1456, 1550, 1569
BspMI ACCTGC 1 cut(s) 1002
BspPI GGATC 3 cut(s) 538, 955, 1165
BspQI GCTCTTC 1 cut(s) 782
BspT104I TTCGAA 2 cut(s) 145, 307
BspT107I GGYRCC 3 cut(s) 492, 824, 1548
BsrDI GCAATG 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 344, 400
BsrI ACTGG 3 cut(s) 260, 972, 1438
BssMI GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
Bst6I CTCTTC 4 cut(s) 62, 782, 1791, 1802
BstAPI GCANNNNNTGC 1 cut(s) 1017
BstAUI TGTACA 2 cut(s) 344, 400
BstBI TTCGAA 2 cut(s) 145, 307
BstC8I GCNNGC 7 cut(s) 168, 293, 328, 547, 624, 1003, 1098
BstDEI CTNAG 1 cut(s) 331
BstF5I GGATG 5 cut(s) 205, 411, 747, 1028, 1729
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 8 cut(s) 448, 478, 533, 822, 950, 1160, 1448, 1543
BstMAI GTCTC 3 cut(s) 731, 1259, 1499
BstMBI GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
BstMWI GCNNNNNNNGC 5 cut(s) 126, 1017, 1023, 1476, 1652
BstNSI RCATGY 5 cut(s) 330, 370, 865, 1005, 1383
BstPAI GACNNNNGTC 1 cut(s) 723
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 2 cut(s) 1209, 1242
BstSLI GKGCMC 3 cut(s) 269, 996, 1142
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 4 cut(s) 132, 554, 666, 1004
BstX2I RGATCY 2 cut(s) 530, 947
BstXI CCANNNNNNTGG 1 cut(s) 1034
BstYI RGATCY 2 cut(s) 530, 947
BsuRI GGCC 2 cut(s) 1455, 1634
BtgZI GCGATG 1 cut(s) 626
BtsCI GGATG 5 cut(s) 205, 411, 747, 1028, 1729
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 3 cut(s) 267, 1003, 1140
BveI ACCTGC 1 cut(s) 1002
Cac8I GCNNGC 7 cut(s) 168, 293, 328, 547, 624, 1003, 1098
CaiI CAGNNNCTG 2 cut(s) 353, 1017
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 3 cut(s) 1454, 1762, 1777
Csp6I GTAC 8 cut(s) 340, 345, 401, 825, 1075, 1450, 1465, 1549
CspCI CAANNNNNGTGG 4 cut(s) 1324, 1359, 1541, 1576
CviQI GTAC 8 cut(s) 340, 345, 401, 825, 1075, 1450, 1465, 1549
DdeI CTNAG 1 cut(s) 331
DpnI GATC 8 cut(s) 447, 477, 532, 821, 949, 1159, 1447, 1542
DpnII GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
DriI GACNNNNNGTC 1 cut(s) 1383
Eam1104I CTCTTC 4 cut(s) 62, 782, 1791, 1802
Eam1105I GACNNNNNGTC 1 cut(s) 1383
EarI CTCTTC 4 cut(s) 62, 782, 1791, 1802
EciI GGCGGA 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 1762, 1777
EcoO109I RGGNCCY 1 cut(s) 1762
EcoRI GAATTC 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 328
FalI AAGNNNNNCTT 2 cut(s) 1639, 1671
FauNDI CATATG 1 cut(s) 1416
FbaI TGATCA 3 cut(s) 445, 475, 1540
Fnu4HI GCNGC 4 cut(s) 121, 543, 680, 1018
FokI GGATG 5 cut(s) 212, 398, 754, 1035, 1736
Fsp4HI GCNGC 4 cut(s) 121, 543, 680, 1018
FspBI CTAG 3 cut(s) 867, 1134, 1787
GlaI GCGC 1 cut(s) 130
GluI GCNGC 4 cut(s) 121, 543, 680, 1018
GsuI CTGGAG 2 cut(s) 380, 989
HaeIII GGCC 2 cut(s) 1455, 1634
HapII CCGG 2 cut(s) 415, 1623
HhaI GCGC 1 cut(s) 131
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HpaII CCGG 2 cut(s) 415, 1623
HphI GGTGA 6 cut(s) 401, 485, 649, 1152, 1241, 1283
Hpy166II GTNNAC 5 cut(s) 401, 657, 994, 1140, 1346
Hpy188I TCNGA 9 cut(s) 322, 334, 510, 649, 859, 952, 1315, 1428, 1738
Hpy188III TCNNGA 2 cut(s) 437, 1787
Hpy8I GTNNAC 5 cut(s) 401, 657, 994, 1140, 1346
Hpy99I CGWCG 1 cut(s) 389
HpyAV CCTTC 6 cut(s) 8, 43, 386, 1033, 1688, 1775
HpyCH4IV ACGT 2 cut(s) 108, 653
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 1017, 1023, 1476, 1652
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 2 cut(s) 108, 653
HspAI GCGC 1 cut(s) 129
KpnI GGTACC 2 cut(s) 828, 1552
Ksp22I TGATCA 3 cut(s) 445, 475, 1540
Kzo9I GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
LguI GCTCTTC 1 cut(s) 782
LmnI GCTCC 2 cut(s) 209, 970
Lsp1109I GCAGC 4 cut(s) 132, 554, 666, 1004
LweI GCATC 5 cut(s) 313, 340, 420, 488, 1013
MaeI CTAG 3 cut(s) 867, 1134, 1787
MaeII ACGT 2 cut(s) 108, 653
MaeIII GTNAC 4 cut(s) 192, 281, 604, 1529
MalI GATC 8 cut(s) 447, 477, 532, 821, 949, 1159, 1447, 1542
MboI GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
MboII GAAGA 7 cut(s) 23, 79, 769, 1259, 1262, 1328, 1808
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 2 cut(s) 530, 947
MhlI GDGCHC 3 cut(s) 269, 996, 1142
MluCI AATT 8 cut(s) 97, 233, 685, 1110, 1276, 1329, 1489, 1626
MlyI GAGTC 3 cut(s) 15, 238, 947
MmeI TCCRAC 1 cut(s) 1204
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 3 cut(s) 462, 1442, 1629
MslI CAYNNNNRTG 1 cut(s) 1032
MspA1I CMGCKG 1 cut(s) 1592
MspI CCGG 2 cut(s) 415, 1623
MspR9I CCNGG 1 cut(s) 416
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 4 cut(s) 47, 65, 559, 763
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 5 cut(s) 126, 1017, 1023, 1476, 1652
NciI CCSGG 1 cut(s) 416
NdeI CATATG 1 cut(s) 1416
NdeII GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
NlaIV GGNNCC 6 cut(s) 258, 494, 826, 1456, 1550, 1569
NmuCI GTSAC 2 cut(s) 192, 1529
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 5 cut(s) 330, 370, 865, 1005, 1383
NspV TTCGAA 2 cut(s) 145, 307
PaeI GCATGC 2 cut(s) 330, 1005
PaqCI CACCTGC 1 cut(s) 1002
PciI ACATGT 3 cut(s) 366, 861, 1379
PciSI GCTCTTC 1 cut(s) 782
PcsI WCGNNNNNNNCGW 1 cut(s) 659
PctI GAATGC 4 cut(s) 47, 65, 559, 763
PfeI GAWTC 7 cut(s) 74, 221, 467, 696, 1058, 1302, 1733
Pfl23II CGTACG 1 cut(s) 1449
PflFI GACNNNGTC 1 cut(s) 514
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 4 cut(s) 122, 544, 681, 1019
PleI GAGTC 3 cut(s) 14, 237, 947
PpsI GAGTC 3 cut(s) 14, 237, 947
PpuMI RGGWCCY 1 cut(s) 1762
PscI ACATGT 3 cut(s) 366, 861, 1379
PshAI GACNNNNGTC 1 cut(s) 723
PsiI TTATAA 1 cut(s) 633
Psp1406I AACGTT 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 1762
PspLI CGTACG 1 cut(s) 1449
PspN4I GGNNCC 6 cut(s) 258, 494, 826, 1456, 1550, 1569
PspPI GGNCC 3 cut(s) 1454, 1762, 1777
PspPPI RGGWCCY 1 cut(s) 1762
PstNI CAGNNNCTG 2 cut(s) 353, 1017
PsuI RGATCY 2 cut(s) 530, 947
PsyI GACNNNGTC 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 1592
RsaI GTAC 8 cut(s) 341, 346, 402, 826, 1076, 1451, 1466, 1550
RsaNI GTAC 8 cut(s) 340, 345, 401, 825, 1075, 1450, 1465, 1549
RseI CAYNNNNRTG 1 cut(s) 1032
SapI GCTCTTC 1 cut(s) 782
SaqAI TTAA 3 cut(s) 462, 1442, 1629
SatI GCNGC 4 cut(s) 121, 543, 680, 1018
Sau3AI GATC 8 cut(s) 445, 475, 530, 819, 947, 1157, 1445, 1540
Sau96I GGNCC 3 cut(s) 1454, 1762, 1777
SchI GAGTC 3 cut(s) 15, 238, 947
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 3 cut(s) 269, 996, 1142
SfaNI GCATC 5 cut(s) 313, 340, 420, 488, 1013
SfcI CTRYAG 2 cut(s) 1209, 1242
SfuI TTCGAA 2 cut(s) 145, 307
SinI GGWCC 2 cut(s) 1762, 1777
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 736, 1349
SmoI CTYRAG 2 cut(s) 736, 1349
SphI GCATGC 2 cut(s) 330, 1005
Sse9I AATT 8 cut(s) 97, 233, 685, 1110, 1276, 1329, 1489, 1626
SsiI CCGC 4 cut(s) 160, 904, 1020, 1775
SspMI CTAG 3 cut(s) 867, 1134, 1787
StyD4I CCNGG 1 cut(s) 414
TaiI ACGT 2 cut(s) 111, 656
TaqI TCGA 7 cut(s) 9, 145, 227, 307, 436, 569, 717
TasI AATT 8 cut(s) 97, 233, 685, 1110, 1276, 1329, 1489, 1626
TatI WGTACW 2 cut(s) 344, 400
TfiI GAWTC 7 cut(s) 74, 221, 467, 696, 1058, 1302, 1733
Tru1I TTAA 3 cut(s) 462, 1442, 1629
Tru9I TTAA 3 cut(s) 462, 1442, 1629
TscAI CASTG 3 cut(s) 267, 1003, 1147
TseFI GTSAC 2 cut(s) 192, 1529
TseI GCWGC 4 cut(s) 120, 542, 679, 1017
Tsp45I GTSAC 2 cut(s) 192, 1529
TspDTI ATGAA 8 cut(s) 326, 566, 758, 897, 1050, 1380, 1728, 1809
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 3 cut(s) 267, 1003, 1147
Tth111I GACNNNGTC 1 cut(s) 514
VneI GTGCAC 2 cut(s) 992, 1138
VpaK11BI GGWCC 2 cut(s) 1762, 1777
XapI RAATTY 5 cut(s) 97, 685, 1110, 1276, 1329
XbaI TCTAGA 1 cut(s) 1786
XceI RCATGY 5 cut(s) 330, 370, 865, 1005, 1383
XcmI CCANNNNNNNNNTGG 1 cut(s) 1596
XspI CTAG 3 cut(s) 867, 1134, 1787
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.