Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008386

Physical Location & Seq

Genomic Coordinates Forward (+)

9043168 .. 9045674

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGTAAAAATCAAGCTTACAAGGCTATGCAGAGATCCAGGCTCGGCTCCAGCTCTGCCGGCCCCGATGAGGTCGAAGACGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCTAGCCTCAAAACTTCTCATACAATTACCTGGGAGGAGTATAAACAGAAGCAAAAGGAAGATGAAATTAGAAAGGGCGAACTGGAGAAGGATACTGATAGAATGATGAGAGAATACAGAGCTCAACTGGATGCCGAAAGGGCTCGCAAGCTTGCCAATGGAAGAAACCACTCTAGTAGTAAGTCCGATCGCAAAAAAGATAAGAAGGACAAAGATTTAAAGAAACGCAGCAGCAGCAGCAGGAAGAGAAAGCATTCAAGAAGGAGATCTTCAGAGTCTAGCTCCTCGAGCTCATCCTCAGATTCTTCCAGTAGTGAAGACGAAGACCGAGAATCAAGACGATCCAAGTCCAGGTCCAAGAGAACAAAGAAGGAAAAGAAGCACAGGTCAAAGACCAAACACTCAAGCAGCGACGATGACGAGGCTGACGGTCCCGTGCCACTTTCAAGATTCTTCGGGAATGCGAAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

23.01

Weight (kDa)

10.01

Isoelectric Point (pI)

69.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43795 AT2G43795 AT3G59800 AT3G59800
fragaria_vesca	FvH4_1g00470
malus_domestica	MD02G1003900.v1.1 MD15G1147200.v1.1
prunus_persica	Prupe.7G267400_v2.0.a1 Prupe.7G267400_v2.0.a1
pyrus_communis	pycom02g00240 pycom15g13210
rosa_chinensis	RchiOBHm_Chr2g0084981
rosa_laevigata	RLG00000015653
rosa_multiflora	Rmu_sc0001196.1_g000004 Rmu_sc0008647.1_g000019
rosa_roxburghii	Rroxscaffold_2G00155660
rosa_rugosa	Rorug01G0457400 Rorug01G0457500
rosa_samantha	Rh2AG005400 Rh2BG006400 Rh2CG006900 Rh2DG006800
rosa_wichuraiana	Rw2G000510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	30, 468
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	70, 483
AgsI	TTSAA	2 cut(s)	390, 579
AjnI	CCWGG	3 cut(s)	38, 161, 482
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	6 cut(s)	17, 54, 254, 283, 414, 423
AluI	AGCT	6 cut(s)	17, 54, 254, 283, 414, 423
Alw21I	GWGCWC	2 cut(s)	256, 425
AlwI	GGATC	2 cut(s)	30, 468
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	6 cut(s)	122, 360, 363, 366, 369, 540
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	3 cut(s)	62, 486, 563
AsuHPI	GGTGA	1 cut(s)	99
AsuNHI	GCTAGC	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	2 cut(s)	486, 563
BanII	GRGCYC	3 cut(s)	256, 277, 425
BbsI	GAAGAC	3 cut(s)	84, 456, 462
Bbv12I	GWGCWC	2 cut(s)	256, 425
BbvI	GCAGC	6 cut(s)	109, 372, 375, 378, 381, 552
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BciT130I	CCWGG	3 cut(s)	40, 163, 484
BciVI	GTATCC	1 cut(s)	217
BfaI	CTAG	3 cut(s)	135, 306, 411
BfuI	GTATCC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	6 cut(s)	123, 361, 364, 367, 370, 541
BlsI	GCNGC	6 cut(s)	124, 362, 365, 368, 371, 542
Bme1390I	CCNGG	3 cut(s)	40, 163, 484
Bme18I	GGWCC	2 cut(s)	486, 563
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	3 cut(s)	62, 486, 563
BmiI	GGNNCC	3 cut(s)	49, 64, 565
BmrFI	CCNGG	3 cut(s)	40, 163, 484
BmsI	GCATC	1 cut(s)	253
BmtI	GCTAGC	1 cut(s)	138
BpiI	GAAGAC	3 cut(s)	84, 456, 462
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	2 cut(s)	34, 236
BpuEI	CTTGAG	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 483
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	219, 264, 441
BseBI	CCWGG	3 cut(s)	40, 163, 484
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	97, 268, 425
BseLI	CCNNNNNNNGG	2 cut(s)	70, 483
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	219, 264, 441
BseRI	GAGGAG	2 cut(s)	182, 406
BseXI	GCAGC	6 cut(s)	109, 372, 375, 378, 381, 552
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	322
BsiHKAI	GWGCWC	2 cut(s)	256, 425
BsiHKCI	CYCGRG	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	70, 483
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	2 cut(s)	385, 598
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	3 cut(s)	256, 277, 425
Bsp143I	GATC	4 cut(s)	35, 319, 398, 473
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	443
BspLI	GGNNCC	3 cut(s)	49, 64, 565
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	30, 468
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	219, 264, 441
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	35, 319, 398, 473
Bst2UI	CCWGG	3 cut(s)	40, 163, 484
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	371
BstC8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	3 cut(s)	97, 268, 425
BstKTI	GATC	4 cut(s)	38, 322, 401, 476
BstMBI	GATC	4 cut(s)	35, 319, 398, 473
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 60, 131, 272, 366, 369, 420
BstNI	CCWGG	3 cut(s)	40, 163, 484
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	3 cut(s)	38, 161, 482
BstV1I	GCAGC	6 cut(s)	109, 372, 375, 378, 381, 552
BstV2I	GAAGAC	3 cut(s)	84, 456, 462
BstX2I	RGATCY	2 cut(s)	35, 398
BstYI	RGATCY	2 cut(s)	35, 398
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	97, 268, 425
Cac8I	GCNNGC	6 cut(s)	61, 120, 136, 277, 281, 285
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	3 cut(s)	62, 486, 563
CviAII	CATG	2 cut(s)	85, 119
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	4 cut(s)	37, 321, 400, 475
DpnII	GATC	4 cut(s)	35, 319, 398, 473
DraI	TTTAAA	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Ecl136II	GAGCTC	2 cut(s)	254, 423
Eco24I	GRGCYC	3 cut(s)	256, 277, 425
Eco47I	GGWCC	2 cut(s)	486, 563
Eco53kI	GAGCTC	2 cut(s)	254, 423
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	418
EcoICRI	GAGCTC	2 cut(s)	254, 423
EcoRII	CCWGG	3 cut(s)	38, 161, 482
EcoT38I	GRGCYC	3 cut(s)	256, 277, 425
FaeI	CATG	2 cut(s)	88, 122
FaiI	YATR	5 cut(s)	29, 86, 120, 153, 174
FalI	AAGNNNNNCTT	2 cut(s)	385, 417
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	2 cut(s)	84, 118
Fnu4HI	GCNGC	6 cut(s)	123, 361, 364, 367, 370, 541
FokI	GGATG	3 cut(s)	104, 275, 412
FriOI	GRGCYC	3 cut(s)	256, 277, 425
Fsp4HI	GCNGC	6 cut(s)	123, 361, 364, 367, 370, 541
FspBI	CTAG	3 cut(s)	135, 306, 411
GluI	GCNGC	6 cut(s)	123, 361, 364, 367, 370, 541
GsuI	CTGGAG	2 cut(s)	34, 236
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	2 cut(s)	88, 122
HindIII	AAGCTT	2 cut(s)	15, 281
HinfI	GANTC	4 cut(s)	407, 434, 464, 582
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	99
Hpy188I	TCNGA	3 cut(s)	319, 406, 433
Hpy188III	TCNNGA	4 cut(s)	390, 468, 579, 589
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	214, 331, 387, 496
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 60, 131, 272, 366, 369, 420
HpyF3I	CTNAG	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	88, 122
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	35, 319, 398, 473
LmnI	GCTCC	2 cut(s)	53, 419
Lsp1109I	GCAGC	6 cut(s)	109, 372, 375, 378, 381, 552
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	3 cut(s)	135, 306, 411
MalI	GATC	4 cut(s)	37, 321, 400, 475
MboI	GATC	4 cut(s)	35, 319, 398, 473
MboII	GAAGA	9 cut(s)	89, 203, 306, 388, 393, 429, 461, 467, 577
MflI	RGATCY	2 cut(s)	35, 398
MhlI	GDGCHC	3 cut(s)	256, 277, 425
MluCI	AATT	2 cut(s)	156, 198
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	6 cut(s)	64, 149, 160, 427, 439, 547
MroNI	GCCGGC	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	112
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	3 cut(s)	40, 163, 484
Mva1269I	GAATGC	2 cut(s)	385, 598
MvaI	CCWGG	3 cut(s)	40, 163, 484
MwoI	GCNNNNNNNGC	7 cut(s)	23, 60, 131, 272, 366, 369, 420
NaeI	GCCGGC	1 cut(s)	61
NdeII	GATC	4 cut(s)	35, 319, 398, 473
NgoMIV	GCCGGC	1 cut(s)	59
NheI	GCTAGC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	88, 122
NlaIV	GGNNCC	3 cut(s)	49, 64, 565
NmeAIII	GCCGAG	1 cut(s)	24
NspI	RCATGY	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	418
PctI	GAATGC	2 cut(s)	385, 598
PdiI	GCCGGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	434, 464, 582
PkrI	GCNGC	6 cut(s)	124, 362, 365, 368, 371, 542
Ple19I	CGATCG	1 cut(s)	322
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp124BI	GAGCTC	2 cut(s)	256, 425
Psp6I	CCWGG	3 cut(s)	38, 161, 482
PspGI	CCWGG	3 cut(s)	38, 161, 482
PspN4I	GGNNCC	3 cut(s)	49, 64, 565
PspPI	GGNCC	3 cut(s)	62, 486, 563
PspXI	VCTCGAGB	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	35, 398
PvuI	CGATCG	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	112
SacI	GAGCTC	2 cut(s)	256, 425
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	6 cut(s)	123, 361, 364, 367, 370, 541
Sau3AI	GATC	4 cut(s)	35, 319, 398, 473
Sau96I	GGNCC	3 cut(s)	62, 486, 563
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	3 cut(s)	40, 163, 484
SduI	GDGCHC	3 cut(s)	256, 277, 425
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	418
SinI	GGWCC	2 cut(s)	486, 563
SlaI	CTCGAG	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	418, 535
SmoI	CTYRAG	2 cut(s)	418, 535
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	156, 198
SspMI	CTAG	3 cut(s)	135, 306, 411
SstI	GAGCTC	2 cut(s)	256, 425
StyD4I	CCNGG	3 cut(s)	38, 161, 482
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	2 cut(s)	75, 419
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	2 cut(s)	156, 198
TfiI	GAWTC	3 cut(s)	434, 464, 582
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	6 cut(s)	122, 360, 363, 366, 369, 540
TspDTI	ATGAA	3 cut(s)	87, 92, 210
VpaK11BI	GGWCC	2 cut(s)	486, 563
XceI	RCATGY	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	3 cut(s)	135, 306, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.