pycom15g14180

Ribosomal protein S6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008708
Physical Location & Seq
Reverse (-)
9660002 .. 9661774
1773 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGCCGCTGTACGATTGTATGCTGCTGCTGAAACCGCATGTGAGGAAGGAGTCTCTGATGGACTTGGTCGCTCGAGTGAGCAAACACGTTTACAGAAGAAATGGAGTTATTACTGACATGAAGTCATTCGGCACTGTTCAGCTGGGTTATGGTATTAAAAAGCTTGATGGAAGGTATTATCAGGGTCAACTAATGCAAATGACAATGATGTCTACACCCAACATCAACAAGGAGCTGCACTACTTGAACAAGGATGATCGGTTGCTGCGCTGGCTGTTGGTTAAACACCGAGAAACAAAGTATGGACAGGAATTTCTTAGTGAAGAGGATTCGAAAACTGAATTTAATAAGCTTCAGCGGAGCAGCATATATGGTATGGATGAAGATGAGGATGAGGACGAGGATGATGATGACGATGACGAGGAATACGATGCGGAACAAGAAGGAAAACGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S6

Protein Analysis

153

Amino Acids

18.07

Weight (kDa)

4.89

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S6 PF01250 4 - 95 3.3e-16 Ribosomal protein S6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 208
AccI GTMKAC 1 cut(s) 212
AciI CCGC 4 cut(s) 5, 35, 358, 434
AcsI RAATTY 2 cut(s) 311, 341
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 2 cut(s) 11, 454
AflIII ACRYGT 1 cut(s) 85
AgsI TTSAA 1 cut(s) 247
AhdI GACNNNNNGTC 1 cut(s) 121
AluBI AGCT 4 cut(s) 142, 163, 235, 352
AluI AGCT 4 cut(s) 142, 163, 235, 352
Alw26I GTCTC 1 cut(s) 57
Ama87I CYCGRG 1 cut(s) 72
ApeKI GCWGC 5 cut(s) 22, 25, 235, 265, 363
ApoI RAATTY 2 cut(s) 311, 341
Asp700I GAANNNNTTC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 270
AsuII TTCGAA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 72
BbvI GCAGC 5 cut(s) 9, 12, 222, 252, 375
BccI CCATC 2 cut(s) 52, 161
BcoDI GTCTC 1 cut(s) 57
BisI GCNGC 6 cut(s) 5, 23, 26, 236, 266, 364
BlsI GCNGC 6 cut(s) 6, 24, 27, 237, 267, 365
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 72
BmsI GCATC 1 cut(s) 421
Bpu14I TTCGAA 1 cut(s) 332
BseGI GGATG 4 cut(s) 259, 385, 397, 409
BseXI GCAGC 5 cut(s) 9, 12, 222, 252, 375
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 72
Bsp119I TTCGAA 1 cut(s) 332
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 4 cut(s) 5, 35, 358, 434
BspT104I TTCGAA 1 cut(s) 332
BssMI GATC 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 318
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 317
BstF5I GGATG 4 cut(s) 259, 385, 397, 409
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 34, 271
BstNSI RCATGY 1 cut(s) 41
BstV1I GCAGC 5 cut(s) 9, 12, 222, 252, 375
BtsCI GGATG 4 cut(s) 259, 385, 397, 409
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 10, 453
CviAII CATG 2 cut(s) 38, 118
CviJI RGCY 5 cut(s) 142, 163, 235, 274, 352
CviKI_1 RGCY 5 cut(s) 142, 163, 235, 274, 352
CviQI GTAC 2 cut(s) 10, 453
DdeI CTNAG 1 cut(s) 317
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
DrdI GACNNNNNNGTC 1 cut(s) 208
DriI GACNNNNNGTC 1 cut(s) 121
DseDI GACNNNNNNGTC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 318
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 72
FaeI CATG 2 cut(s) 41, 121
FaiI YATR 9 cut(s) 20, 39, 119, 150, 303, 368, 370, 372, 377
FatI CATG 2 cut(s) 37, 117
FblI GTMKAC 1 cut(s) 212
Fnu4HI GCNGC 6 cut(s) 5, 23, 26, 236, 266, 364
FokI GGATG 4 cut(s) 266, 392, 404, 416
Fsp4HI GCNGC 6 cut(s) 5, 23, 26, 236, 266, 364
GlaI GCGC 1 cut(s) 269
GluI GCNGC 6 cut(s) 5, 23, 26, 236, 266, 364
GsaI CCCAGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 270
Hin1II CATG 2 cut(s) 41, 121
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HindIII AAGCTT 2 cut(s) 161, 350
HinfI GANTC 2 cut(s) 50, 329
Hpy166II GTNNAC 3 cut(s) 91, 188, 213
Hpy188I TCNGA 1 cut(s) 57
Hpy8I GTNNAC 3 cut(s) 91, 188, 213
HpyAV CCTTC 3 cut(s) 40, 165, 437
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 87, 451
HpyCH4V TGCA 2 cut(s) 196, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 271
HpyF3I CTNAG 1 cut(s) 317
HpySE526I ACGT 2 cut(s) 87, 451
Hsp92II CATG 2 cut(s) 41, 121
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 2 cut(s) 232, 360
LpnPI CCDG 4 cut(s) 128, 167, 256, 293
Lsp1109I GCAGC 5 cut(s) 9, 12, 222, 252, 375
LweI GCATC 1 cut(s) 421
MaeII ACGT 2 cut(s) 87, 451
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 3 cut(s) 108, 335, 395
MluCI AATT 2 cut(s) 311, 341
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 6 cut(s) 36, 319, 382, 388, 394, 415
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 156, 282, 345
MspA1I CMGCKG 3 cut(s) 7, 142, 358
MwoI GCNNNNNNNGC 2 cut(s) 34, 271
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 41, 121
NspI RCATGY 1 cut(s) 41
NspV TTCGAA 1 cut(s) 332
PaeR7I CTCGAG 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 329
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 6 cut(s) 6, 24, 27, 237, 267, 365
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 142
PspXI VCTCGAGB 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 2 cut(s) 11, 454
RsaNI GTAC 2 cut(s) 10, 453
SaqAI TTAA 3 cut(s) 156, 282, 345
SatI GCNGC 6 cut(s) 5, 23, 26, 236, 266, 364
Sau3AI GATC 1 cut(s) 256
SchI GAGTC 1 cut(s) 59
SetI ASST 8 cut(s) 90, 144, 165, 176, 237, 354, 454, 458
SfaNI GCATC 1 cut(s) 421
Sfr274I CTCGAG 1 cut(s) 72
SfuI TTCGAA 1 cut(s) 332
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 2 cut(s) 311, 341
SsiI CCGC 4 cut(s) 5, 35, 358, 434
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 2 cut(s) 90, 454
TaqI TCGA 2 cut(s) 73, 332
TasI AATT 2 cut(s) 311, 341
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 156, 282, 345
Tru9I TTAA 3 cut(s) 156, 282, 345
TscAI CASTG 1 cut(s) 139
TseI GCWGC 5 cut(s) 22, 25, 235, 265, 363
TspDTI ATGAA 2 cut(s) 134, 396
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 65
XapI RAATTY 2 cut(s) 311, 341
XceI RCATGY 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 72
XmiI GTMKAC 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.