Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008824

Physical Location & Seq

Genomic Coordinates Reverse (-)

9958422 .. 9959222

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGACTGGTTCTCATGGCTGTCAAAAACCGGCCTTGAACCCTCCCTCATCTACGAATACGGCCTCGACTTTTCGCACAACCAGCTGCAGCTCGACGACGTGAGATACTTAGACCACGAGTTTCTTCAGAGCATGGGAATATCTGTGGCCAAGCACAGGCTAGAAATACTCAAGCTTGCCAAGAAAGAAACCAGATTTGGGCACCCGAAATCGCTTTCTCGGCTTAGTTGGGCGCTCATTCGGACCAAGAAGTGCTTCTCCAAGTACTTTAACAAGTTGGTTTTTCATGAGGAGGTGTCTTTTGATGGCAGGGGTGCAACTCAGGCTAAGCCAACTTGGTATCAAGAGCATTGGAGAGGAGCTTTGTTGAGGAAGCACAAGGGTCATTGTGAGGAGGTCGAGGATGAGAAGCCTATGGTGGTCAAAACTAGGAGCATTGCGCTTTCTGGACCGTTGGATGGGAGGGTCCAGGAGAGACTGATGGCTCATAATAATCGGAGCTTGAAGCTATCGGGACCGTTGGATGGGAAGGTTCATGAGACGTTGATGTACACAAATAGGAGCCCAAGGCTGACCGGTTCTTTGGTTGCAAGTTCGAGTCCCAAGTTCTCTGGACCGTTGGATGGAAGAACGTATGAGAAGATCATGGCCGCAAACAAAAGTCCAAGACTTTCTGGGCCGTTGGATGGGAGAGTTGTGAGCCCAAAGTTTTGCTTTCCTTACGAGAAGGAAAGGGAGGATGTTGATTATGATGATCATTCACTTCGGACTGCACTGTTTCAGGATCTGAAGCCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_2

Protein Analysis

267

Amino Acids

30.61

Weight (kDa)

9.27

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008824)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01970
malus_domestica	MD02G1018000.v1.1 MD15G1161900.v1.1
prunus_persica	Prupe.7G257100_v2.0.a1
pyrus_communis	pycom02g01600 pycom15g14550
rosa_chinensis	RchiOBHm_Chr2g0087001
rosa_laevigata	RLG00000002278 RLG00000015821
rosa_multiflora	Rmu_sc0010698.1_g000001 Rmu_sc0029090.1_g000001 Rmu_sc0030653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153970
rosa_rugosa	Rorug01G0471400 Rorug07G0186800
rosa_samantha	Rh2AG024200 Rh2BG024700 Rh2CG024800 Rh2DG024700 Rh7AG330800 Rh7BG320500
rosa_wichuraiana	Rw2G001900 Rw2G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	1 cut(s)	651
AclWI	GGATC	1 cut(s)	792
AcoI	YGGCCR	2 cut(s)	147, 648
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	266, 551
AfiI	CCNNNNNNNGG	6 cut(s)	156, 198, 458, 524, 623, 686
AgeI	ACCGGT	1 cut(s)	575
AgsI	TTSAA	2 cut(s)	38, 505
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	468
AjuI	GAANNNNNNNTTGG	4 cut(s)	180, 212, 239, 271
AluBI	AGCT	6 cut(s)	85, 91, 175, 362, 501, 508
AluI	AGCT	6 cut(s)	85, 91, 175, 362, 501, 508
Alw26I	GTCTC	2 cut(s)	469, 533
AlwI	GGATC	1 cut(s)	792
AlwNI	CAGNNNCTG	1 cut(s)	787
AoxI	GGCC	5 cut(s)	31, 61, 147, 648, 677
ApeKI	GCWGC	2 cut(s)	85, 88
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
AsiGI	ACCGGT	1 cut(s)	575
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	235, 442
AspS9I	GGNCC	6 cut(s)	243, 449, 466, 515, 614, 677
AvaII	GGWCC	5 cut(s)	243, 449, 466, 515, 614
BaeGI	GKGCMC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	201
BanII	GRGCYC	2 cut(s)	566, 704
BauI	CACGAG	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	72, 100
BccI	CCATC	6 cut(s)	299, 452, 475, 518, 617, 680
BceAI	ACGGC	2 cut(s)	76, 664
BciT130I	CCWGG	1 cut(s)	470
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	469, 533
BfaI	CTAG	2 cut(s)	161, 429
BfmI	CTRYAG	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	3 cut(s)	86, 89, 651
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	3 cut(s)	87, 90, 652
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	5 cut(s)	243, 449, 466, 515, 614
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	6 cut(s)	243, 449, 466, 515, 614, 677
BmiI	GGNNCC	4 cut(s)	203, 467, 516, 563
BmrFI	CCNGG	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	6 cut(s)	156, 198, 458, 524, 623, 686
Bse118I	RCCGGY	2 cut(s)	29, 575
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	6 cut(s)	409, 463, 529, 628, 691, 745
BseLI	CCNNNNNNNGG	6 cut(s)	156, 198, 458, 524, 623, 686
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	3 cut(s)	305, 372, 407
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	72, 100
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	5 cut(s)	33, 63, 149, 650, 679
BshNI	GGYRCC	1 cut(s)	201
BshTI	ACCGGT	1 cut(s)	575
BsiSI	CCGG	2 cut(s)	30, 576
BslFI	GGGAC	2 cut(s)	528, 585
BslI	CCNNNNNNNGG	6 cut(s)	156, 198, 458, 524, 623, 686
BsmAI	GTCTC	2 cut(s)	469, 533
BsmBI	CGTCTC	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	528, 585
BsnI	GGCC	5 cut(s)	33, 63, 149, 650, 679
Bsp1286I	GDGCHC	3 cut(s)	204, 566, 704
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	3 cut(s)	642, 754, 784
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	651
BspANI	GGCC	5 cut(s)	33, 63, 149, 650, 679
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	2 cut(s)	286, 535
BspLI	GGNNCC	4 cut(s)	203, 467, 516, 563
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	792
BspT107I	GGYRCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	29, 575
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	2 cut(s)	29, 575
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	3 cut(s)	642, 754, 784
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	566
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	4 cut(s)	453, 519, 618, 777
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	4 cut(s)	109, 224, 321, 327
BstF5I	GGATG	6 cut(s)	409, 463, 529, 628, 691, 745
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	235, 442
BstKTI	GATC	3 cut(s)	645, 757, 787
BstMAI	GTCTC	2 cut(s)	469, 533
BstMBI	GATC	3 cut(s)	642, 754, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 220, 323
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	72, 100
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
BsuRI	GGCC	5 cut(s)	33, 63, 149, 650, 679
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	6 cut(s)	409, 463, 529, 628, 691, 745
BtsIMutI	CAGTG	1 cut(s)	773
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	787
CciI	TCATGA	2 cut(s)	286, 535
CfoI	GCGC	2 cut(s)	235, 442
Cfr10I	RCCGGY	2 cut(s)	29, 575
Cfr13I	GGNCC	6 cut(s)	243, 449, 466, 515, 614, 677
Csp6I	GTAC	2 cut(s)	265, 550
CspAI	ACCGGT	1 cut(s)	575
CviAII	CATG	5 cut(s)	15, 133, 287, 536, 646
CviQI	GTAC	2 cut(s)	265, 550
DdeI	CTNAG	4 cut(s)	109, 224, 321, 327
DpnI	GATC	3 cut(s)	644, 756, 786
DpnII	GATC	3 cut(s)	642, 754, 784
EaeI	YGGCCR	2 cut(s)	147, 648
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	2 cut(s)	566, 704
Eco47I	GGWCC	5 cut(s)	243, 449, 466, 515, 614
Eco57I	CTGAAG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	2 cut(s)	566, 704
ErhI	CCWWGG	1 cut(s)	566
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	5 cut(s)	18, 136, 290, 539, 649
FaiI	YATR	9 cut(s)	16, 134, 288, 416, 489, 537, 636, 647, 750
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 698, 730
FaqI	GGGAC	2 cut(s)	528, 585
FatI	CATG	5 cut(s)	14, 132, 286, 535, 645
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	3 cut(s)	86, 89, 651
FokI	GGATG	6 cut(s)	416, 470, 536, 635, 698, 752
FriOI	GRGCYC	2 cut(s)	566, 704
Fsp4HI	GCNGC	3 cut(s)	86, 89, 651
FspBI	CTAG	2 cut(s)	161, 429
GlaI	GCGC	2 cut(s)	234, 441
GluI	GCNGC	3 cut(s)	86, 89, 651
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	5 cut(s)	33, 63, 149, 650, 679
HapII	CCGG	2 cut(s)	30, 576
HhaI	GCGC	2 cut(s)	235, 442
Hin1II	CATG	5 cut(s)	18, 136, 290, 539, 649
Hin6I	GCGC	2 cut(s)	233, 440
HinP1I	GCGC	2 cut(s)	233, 440
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	598
HpaII	CCGG	2 cut(s)	30, 576
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	5 cut(s)	129, 243, 498, 768, 789
Hpy188III	TCNNGA	7 cut(s)	287, 344, 447, 513, 536, 612, 782
Hpy8I	GTNNAC	1 cut(s)	552
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	2 cut(s)	523, 721
HpyCH4III	ACNGT	4 cut(s)	453, 519, 618, 777
HpyCH4IV	ACGT	3 cut(s)	99, 542, 632
HpyCH4V	TGCA	4 cut(s)	88, 317, 590, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 220, 323
HpyF3I	CTNAG	4 cut(s)	109, 224, 321, 327
HpySE526I	ACGT	3 cut(s)	99, 542, 632
Hsp92II	CATG	5 cut(s)	18, 136, 290, 539, 649
HspAI	GCGC	2 cut(s)	233, 440
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	642, 754, 784
LmnI	GCTCC	4 cut(s)	359, 432, 498, 561
Lsp1109I	GCAGC	2 cut(s)	72, 100
MaeI	CTAG	2 cut(s)	161, 429
MaeII	ACGT	3 cut(s)	99, 542, 632
MalI	GATC	3 cut(s)	644, 756, 786
MboI	GATC	3 cut(s)	642, 754, 784
MboII	GAAGA	3 cut(s)	116, 639, 652
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	3 cut(s)	204, 566, 704
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	4 cut(s)	435, 501, 600, 663
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	30, 576
MspR9I	CCNGG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	82, 220, 323
NdeII	GATC	3 cut(s)	642, 754, 784
NlaIII	CATG	5 cut(s)	18, 136, 290, 539, 649
NlaIV	GGNNCC	4 cut(s)	203, 467, 516, 563
NmeAIII	GCCGAG	1 cut(s)	199
PagI	TCATGA	2 cut(s)	286, 535
PdmI	GAANNNNTTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	468
PinAI	ACCGGT	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	87, 90, 652
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	4 cut(s)	203, 467, 516, 563
PspPI	GGNCC	6 cut(s)	243, 449, 466, 515, 614, 677
PstI	CTGCAG	1 cut(s)	90
PstNI	CAGNNNCTG	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	784
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	266, 551
RsaNI	GTAC	2 cut(s)	265, 550
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	86, 89, 651
Sau3AI	GATC	3 cut(s)	642, 754, 784
Sau96I	GGNCC	6 cut(s)	243, 449, 466, 515, 614, 677
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	3 cut(s)	204, 566, 704
SfcI	CTRYAG	1 cut(s)	86
SinI	GGWCC	5 cut(s)	243, 449, 466, 515, 614
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	1 cut(s)	651
SspMI	CTAG	2 cut(s)	161, 429
StyD4I	CCNGG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	4 cut(s)	453, 519, 618, 777
TaiI	ACGT	3 cut(s)	102, 545, 635
TaqI	TCGA	4 cut(s)	66, 93, 399, 596
TatI	WGTACW	2 cut(s)	264, 549
TauI	GCSGC	1 cut(s)	653
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	780
TseI	GCWGC	2 cut(s)	85, 88
TspDTI	ATGAA	2 cut(s)	275, 524
TspRI	CASTG	1 cut(s)	780
VpaK11BI	GGWCC	5 cut(s)	243, 449, 466, 515, 614
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	2 cut(s)	161, 429
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.