Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010166

Physical Location & Seq

Genomic Coordinates Reverse (-)

11467919 .. 11482328

Gene Structure 14410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7941 bp

ATGCGAGGGGAAGACGAACTGAGATTTTTCTGGGTTGCAAGTAGGGGCTCGGGTGGGGAGAAGAGGGGGGTGGGGGGGGGGAATGGTGAGAAGAAAGAAGGACGCGGGGCCGCGGCCTCTGTGCCTCCACCGGGTCGACCCGGCTCCGGACTCTGGTTCTTTCTTCGCCACCACAATGCACCTCGCACCCACACCCTCCACTTCCTCCCGCACGTAGAATCCGTGAGCCGCCAGGCACCCGATCAAAGCCCCTCACCCACACCGGCACCCGCACCCGCGCCGATGGACAGCTCCAATAACTCCTCCAATTCTTCTTCCCGTTCTGCCCCCGCCGTCGTCGAGGAGCCGGAGTACCTCGCCCGCTACTTGGTCATCAAGCACTCGTGGCGTGGCCGCTACAAGCGAATTCTCTGCCTCTCGAACGTCGCCATAACCACCTTGGACCCCGCCACGCTCTCCGTCACCAATTCCTACGACGTCGCCACCGATTTTGACTCCGCCGTGCCGATCATCAGCCGCGACCAGAACTCCAACGAGTTCAATTTGAGTGTTCGGACGGACGGACGGGGGAAATTCAAGGGCATTAAGTTCTCGTCTAGGTACAGAGCGAGTATACTGACCGTGTTGCACAGGATTAGGAGGAATCGGTTGGGCGCCGTCGCTGAGTTTCCGGTGCTTCATCTCCGGCGCCGGAATGCCGAGTGGGTCCCACTCAAATTAAAAGTTACTTATGTTGGGGTTGAACTTATTGATTTAAAAAGTGGAGACCTCCGTTGGTGCTTGGATTTCAGAGATTTTGATTCACCTGCCATTGTTTTCCTTTCTGATGCTTATGGGAAGAAAGGCGGTGAACATGGAAGTTTCGTTCTTTGTCCTTTATATGGAAGAAAATCTAAAGCTTTTCAAGCTGCTTCTGGAACCACGAATTCAGTTATCATTGCAAGTTTGACCAAAACAGCAAAATCTATGGTGGGGTTGTCACTAACTGTGGACACTTCTCAGTCTCTCACTATACCAGAGTACATAAAGCGAAGGGCAAAAGAGGCAGTTGGAGCAGAAGAAACTCCATGCGGAGGTTGGTCTGTGACAAGGTTGCGCTCTGCTGCTCGTGGAACTTTAAATGTTCCAGGGTTGAGTTTGAGTGTTGGCCCAAAAGGTGGACTTGGGGAGAATGGTGATGCTGTATCTCGTCAACTGATTCTTACAAAAGTTTCTCTTATTGAAAGACGCCCAGAGAACTATGAAGCTGTTATTGTTCGACCTTTATCTGCAGTATACGCACTAGTTCGATTTGCTGAGGAGCCCCAAATGTTTGCAATTGAGTTCAATGATGGGTGTTCCATCCATGTTTATGCAAGCACGTCTCGTGATAGCCTACTGGCAGCAGTTCGGGATCTATTGCAAACAAAAGTAGGTAGATCCGGCCAATGTGCTTTGACTGTGTTACCAAGACTGACAATGCCTGGGCATCGCATTGATCCACCTTGCGGGAGGGTCCAATTACAATTTGGACTCCAGCGGGCTGTTGCAGATATGGAGAGTGCATCTATGCATTTGAAACACTTCGCAGCAGCTGCCAAAGATGCAGTTTCTGAAGGTGGTTCTATTCCTGGATCAAGAGCTAAGCTATGGCGTAGAATAAGAGAGTTCAATGCATGTATACCATATAGTGGAGTTCCCCCGAACATAGAAGTACCTGAGGTGACTTTGATGGCTTTAATAACAATGCTTCCATCTACGCCAAATCTTCCTCCAGAGTCCCCTCCCTTACCTCCACCTTCACCTAAAGCGGCTGCGACGGTGATGGGCTTTATTGCATGCTTACGTAGATTACTAGCTTCAGGAACTGCTGCTTCACATGTCATGTCTTTTCCTGCTGCTGTTGGAAGAATAATGGGCTTACTCAGAAATGGTTCAGAGGATGTAGCTGCTGAAGCAGCAGGCCTTGTCGCAGTACTTATTGGTGGTGGTCCCGGGGATACAAATATACTAATGGATTCTAAAGGAGAGCAGCATGCCACAATTATGCACACAAAGTCAGTGTTGTTTGCCAATCATGGTTATGCTATTATACTCTCCAACAGACTTAAGCATATGTCTGTATCACCATTATTGTCGATGGCTGTTGTTGAGGTTCTTGAGGCTATGATATGTGAACCACATGGTGAGACAACACAATACACAGTGTTTGTTGAGCTGTTACGCCAAGTAGCTGGTTTGAAGCGTCGTTTGTTTGCATTGTTTGGACATCCTGCTGAAAGTGTTAGGGAAACAGTGGCTGTGATCATGCGTACAATTGCGGAAGAAGATGCAATTGCAGCAGAGTCAATGCGTGATGCTGCATTGCGTGATGGTGCTCTACTGAGACATTTATTGCATGCGTTCTTCCTTCCTCCTGGTGAGCGACGTGAAGTTAGTCGACAGCTTGTTGCTCTTTGGGCAGATTCTTATCAGCCAGCTCTGGATTTATTGTCTAGAGTTCTGCCTCCTGGGCTTGTTGCTTATTTGCACACACGTTCTGATGGAACTCAATTGGAAGATGCGAATCAAGAAGGATCCTTGACCAGCAGAAGGCAGAGATGCTTACTCCAATTGAGGAAAGGTCGTGCAGGGAGAGGACCAACATCTCAAGAGCATTCCTTACCTAATATAAACAATTCTGAAGTTGGTGATCCCATGACACTGACAGGTGGTGGTGCTTTTAAGGCTGATAACAATCAAAGGTCTGCACTGGTTTCGAGTTCTGGACAGGCTTCTATTCTTCAATCTTCTGTTGCTCAAAGTCAAACCGGTGAAAATTTGATGGCTGAAGTCTTTTCAGGTGTTCCACAAAAGAATCATTCAGCACTTGTGGCGTCAGCTGATATTCAGTCAACGAGCATTCATGAGGCAGTGGAAGCAAATACTTCAATCTCAACTGATTCTGATTCCAATACTACTGGTTTCCAGAGCACAGGCCTCCCTGCTCCTGCTCAGGTTGTTGTTGAAAACACTCCGGTGGGATCCGGCAGGCTACTTTGTAATTGGCCTGAATTCTGGCGAGCATTTAGCCTTGATTACAATCGTGCTAATTTGATCTGGAATGAGCGTACCCGGCAAGAGTTGAGGGAGACTTTGCAGGCTGAGGTTCATAAGTTAGATGTTGAGAAGGAGCGTACTGAAGATATTGTTCCAGGAGGTGCTATGGTAGAGACTGCGACTGGTCAAGATAGCGTGCCACAAATATCTTGGAACTACTCTGAGTTCTCTGTTAGATATCTAAGCTTGTCCAAAGAAGTTTGTGTGGGTCAGTATTATCTGCGTTTACTGCTTGAGAGTGGCAGTGTTGGCAGGGCAAAAAAATTTCCATTGCGCGATCCAGTTGCATTCTTTAGAGCACTCTACCATCGGTTCTTATGTGATGCAGACATAGGACTTACCGTAGATGGTGCTGTTCCAGATGAAATGGGTGCATCTGATGATTGGTGTGACATGGGAAGACTAGATGGTTTTGGAGGTGGAGGAGGATATTCAGTGAGAGAGCTCTGTGCAAGAGCGATGGCAATTGTGTATGAACAGCATTACATGACAGTAGGTCCCTTTGAGGGCACTGCTCACATCACAGTCCTTTTGGATAGGACAGATGATAGGGCTTTAAGGCACCGCCTTCTTTTGCTCTTGAAGGCGTTAATGAAGGTTTTGTCAAATGTGGAGGTGTGTGTTTTGGTGGGAGGATGTGTGTTAGCTGTTGATATGCTAACAGTAGCTCATGAGGCTTCTGAAAGGACAGCTGTTCCTTTGCAATCTAATTTGATTGCTGCTACTGCTTTTATGGAACCGCTCAAGGAATGGATGTTTATTGACAAGGAAGGAGCACAGGTTGGACCTGTTGAAAAGGATGCCATTAGGAGATTTTGGTCAAAGAAGGATATTAACTGGACAACGAGATGCTGGGCTTCTGGGATGTTGGACTGGAAGAGATTGCGGGATATCCGTGAACTTCGTTGGGCTTTAGCTGTTCGAGTCCCTGTTCTCACGCCAACTCAGATTGGTGAGGCAGCATTGTCCATATTACATAGCATGGTATCTGCACATTCAGATTTAGATGATGCTGGAGAGATAGTTACCCCAACTCCTAGAGTAAAATGGATCTTGTCAAGTCCACGCTGCCTTCCACATATTGCTCAGGCTATGCTTTCTGGAGAGCCAAGTATTGTAGAGGGTGCTGCTGCTTTACTTAAGGCCGTTGTAACTAGAAATCCCAAGCCCATGATTCGACTATACAGCACAGGGGTATTTTATTTTGCCCTGGCATATCCTGGATCGAATCTCCTTTCAATCTCCCAACTCTTCTCATTGACTCATGTTCATCAAGCATTTCATGGTGGTGAAGACGCTGCAGTTTCCTCTTCCTTGCCTCTGGCGAAACGCAGTGTATTGGGTGGGCTTCTTCCTGCATCTTTGTTGTATGTATTGGAACGTAGTGGTCCAGCTACATTTGCAGCTGCAATGGTATCGGACTCTGATACTCCAGAGATTATATGGACACACAAGATGCGAGCGGAAAATCTGATTCGTCAGATTTTGCAGCATCTTGGTGACTTTCCGCAGAAATTGTCTCAGCACTGCCATTCTTTATATGAATATGCTCCAATGCCACCAGTGACATACCCAGAGTTAAGAGATGAAATGTGGTGTCACCGTTATTACCTCCGGAACTTGTGTGACGAGATTCGATTTCCAAATTGGCCAATTGTTGAACATGTTGAGTTCGTACAATCATTATTAGTAATGTGGCGTGAGGAGTTGACAAGACGGCCAATGGATCTTTCTGAAGAAGAAGCTTGCAAAATATTAGAGATTTCCTTGAAAGATTTATCAAATGATGATGCCAACACAAGGCATTCTTTTGAGATGGGTGAGGAGATGCCTAGCATATCCAAGCAGATTGAGAACATTGATGAAGAAAAGCTTAAACGGCAATATAGGAAACTTGCCATGAGATACCATCCAGACAAAAATCCTGAAGGAAGGGATAAGTTTCTTTCTGTACAGAAAGCTTATGAGCGCCTGCAGGCCACTATGCAAGGCTTGCAAGGCCCTCAGCCTTGGCGACTGTTGCTTTTATTGAAAGGACAGTGTATCTTGTACAGACGCTATGGAGTCATTCTGGAGCCATTTAAATATGCTGGTTATCCAATGTTGCTCAATGCAGTTACTGTGGACAAGGATGATAACAATTTTCTTTCCTCAGATAGAGCACCCCTCCTGGTTGCGGCATCAGAGCTTATTTGGCTGACGTGTGCATCTTCTTCATTGAATGGAGAAGAGCTTGTGAGGGATGGTGGCATACAACTTCTTGCAAATCTTCTTTCCCGTTGCATGTGCGTAGTTCAGCCGAGCACTGCTGCAAGTGAACCATCTGCCATAATCGTTACAAATGTGATGCGAACCTTTTGTGATTTGAGTAAATTTGAGAGTGCCTGGGCTGAGATCCTTGAATATTCTGGACTAGTTGATGACATTGTGCATTGCACTGAACTTGAGCTTGTACCTTCTGCTGTCGATGCTGCTGTCCAGACTATTGCACATGTGTCTGTGTCCACTGAATTGCAGGATGCTTTGCTGAAGGCTGGTGTCTTATGGTACCTTTTGCCCTTGCTTCTTCAGTATGACTCCACTGCAGAGGAATCTGATGCAACAGAATCACATGGAGTTGGTGCTAGTGTACAAATTGCCAAAAATATGCATGCTGTACGTGCCTCGCAGGCACTATCAAGGCTTAGTGGCTTGTGTAGTGATGAGAGTACAACACCTTATAATCAGAGTGCAGCTGCTGCCCTCAGAGCTTTGTTGACACCTAAGCTTGCCAGTATGTTAAAAGATGAAGCACCGAAAGACCTACTATCTAAACTAAACAATAACTTGGAGTCACCAGAGATTATCTGGAACTCCTCAACCCGAGCAGAACTACTGAAATTTGTGGATCAGCAACATGCAAGTCAGGGTCCTGATGGTTCATATGATATGAAAGATTCACATCTGTTTGGGTACAAGGCACTATCAAAAGAACTATATGTTGGCAATGTTTACTTGAGGGTCTATAACAATCAACCAGATTCTGAGATCAGTGAACCAGAGGCTTTCTGTGTTGCATTAGTTGATTTTATAGCATATCTTGTGCACAGTCAATGTGCTACTGATTCTGAAATTAAGGATGTACCAAATCAGAATGGCTCGTCCCTCGAGACACCTGAGGATTCTAATGATACGGCTATTGGATCAACTGATGAACAGAATACTCCGGCTGAAGATTCTGCACTATCTAATGGACAAGTAGTAGATAAGGAAGAATTTGAAGCTGCTAAGAACCTTAAATTTGCATTGAATTCACTTAAGAACTTACTGACAAGCAGTCCAAATTTGGCGTCAATTTTTTCTACAAAGGATAAGTTATTGCCTCTTTTCGGATGCTTTTCTGTGCCTGTTGCATCAGAAAGCAACATTCCTCAACTTTGCCTGAGTGTGTTGTCACTCTTGACTACATATGCTTCCTGCTTGGAGGCTATGGTTGCAGATGGATCGATCCTTCTTCTTTTATTACAAATGCTTCACTCAGCCCCAACTTGTCGTGAAGGGGTTCTTCATGTTCTTTATGCTCTGGCCAGCACACCTGAACTTGCTTGGGCAGCTGCCAAGCATGGGGGAGTTGTCTACATCCTTGAACTTCTTTTGCCTTTGCAGGAAGAAATTTCCTTACAACAAAGAGCAGCAGCAGCCTCTTTGTTGGGGAAGCTTGTTGGCCAGCCAATGCATGGGCCTAGAGTTGTTATAACATTAGCAAGGTTTCTTCCAGATGGCTTGGTTTCAGTTATTAGGGATGGACCTGGTGAGGCTGTTGTAGTTGCCCTTGAACAGACTACTGAGACCCCAGAACTTGTATGGACACCAGCAATGGCTACTTCATTGTCTGCACAGATTTCAACTATGGCATCAGATCTGTATCGCGAACAGATGAAAGGTCGTGTGGTTGATTGGGATGTACCTGAGCAGGCATCTGGGCAGCAAGAAATGAGAGATGAGCCACAGGTTGGCGGAATCTATGTTAGATTGTTCCTAAAAGATCCCAAGTTTCCTCTCAGAAATCCCAAGAGATTCTTGGAAGGACTGCTAGATCAGTATTTGACATCTATTGCTGCCACACATTATGATACACTAGCTGTTGACCCTGAACTTCCTTTGCTTCTGTCTGCTGCGTTGGTTTCGTTATTACGAGTGCACCCTGCACTTGCAGATCATGTTGGATATCTTGGATATGTGCCCAAACTCGTGGCTGCTGTGGCTTATGAAGGAAGACGAGAAACAATGGCATCAGAGGAGGTAAACAATGGCAATTATGTGGACAAAACAGATGAATCAGATGATCGATCCACACAGCCCACTCAAACTCCCCAAGAACGTGTGCGCCTTAGTTGTTTACGTGTTCTACATCAACTGGCAGCTAGCACCACATGTGCTGAAGCTATGGCAGCGACTAGTGTAGGAACTCCTCAGGTCGTTCCCCTTCTAATGAAAGCAATAGGATGGCTAGGTGGAAGCATACTAGCTCTTGAGACACTGAAGCGTGTTGTGGTTGCTGGAAACCGAGCTAGGGATGCACTTGTTGCACAAGGACTTAAGGTTGGTCTTGTTGAAGTACTTCTGGGCCTTCTTGATTGGAGAGCTGGAGGAAGGAATGGGCCTTGCTCTCAGATGAAGTGGAATGAATCCGAAGCATCTATTGGCAGGGTGCTCGCAATTGAGGTTTTGCATGCATTTGCAACGGAGGGGGCGCATTGTACTAAAGTGCGTGACTTGTTAAATTCCTCAGATGTTTGGGGTGCTTATAAGGATCAGAATCATCGATCTTTTCCTCCCTTCAAATGCTCAATCCGCTGCTGCCGGAATTGCTGGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005768 GO:0005769 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006897 GO:0006898 GO:0006955 GO:0006996 GO:0007032 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0012506 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032879 GO:0032940 GO:0035577 GO:0036230 GO:0042119 GO:0042582 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0060341 GO:0060627 GO:0065007 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099503 GO:1902954 GO:1903649 GO:2000641

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339 DnaJ

Protein Analysis

2647

Amino Acids

289.59

Weight (kDa)

6.1

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RME-8_N	PF19432	121 - 345	2.9e-22	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	393 - 844	5e-53	DNAJ protein RME-8 N-terminal
RME-8_N	PF19432	1007 - 1106	1.7e-22	DNAJ protein RME-8 N-terminal
GYF_2	PF14237	1279 - 1327	9.5e-13	GYF domain 2
DnaJ	PF00226	1645 - 1685	3.7e-10	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26890
fragaria_vesca	FvH4_1g04290 FvH4_1g04290 FvH4_1g04983
malus_domestica	MD02G1042600.v1.1 MD15G1181200.v1.1
prunus_persica	Prupe.7G234400_v2.0.a1 Prupe.7G234400_v2.0.a1
pyrus_communis	pycom02g03540 pycom15g16350
rosa_chinensis	RchiOBHm_Chr2g0089861
rosa_laevigata	RLG00000016062
rosa_multiflora	Rmu_co8299847.1_g000001 Rmu_sc0002384.1_g000010
rosa_roxburghii	Rroxscaffold_2G00151530
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049000 Rh2BG047900 Rh2CG050000 Rh2DG049100
rosa_wichuraiana	Rw2G004120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	5799, 6812, 7866
AarI	CACCTGC	1 cut(s)	814
AatII	GACGTC	1 cut(s)	480
Acc36I	ACCTGC	1 cut(s)	814
Acc65I	GGTACC	1 cut(s)	5625
AccB1I	GGYRCC	6 cut(s)	235, 265, 653, 687, 3639, 5625
AccB7I	CCANNNNNTGG	4 cut(s)	1157, 1670, 6794, 7070
AccBSI	CCGCTC	2 cut(s)	3820, 4541
AccI	GTMKAC	6 cut(s)	136, 613, 1275, 1660, 2419, 6693
AccII	CGCG	6 cut(s)	105, 113, 278, 519, 3354, 6987
AccIII	TCCGGA	2 cut(s)	146, 4692
AcoI	YGGCCR	6 cut(s)	391, 1423, 4727, 4796, 6642, 6781
AcyI	GRCGYC	6 cut(s)	477, 654, 688, 1228, 2855, 6407
AdeI	CACNNNGTG	1 cut(s)	2165
AflII	CTTAAG	4 cut(s)	2087, 4217, 6374, 7655
AflIII	ACRYGT	8 cut(s)	1858, 2513, 4741, 5279, 5569, 7438, 7459, 7490
AgeI	ACCGGT	1 cut(s)	2789
AhdI	GACNNNNNGTC	2 cut(s)	3573, 6393
AhlI	ACTAGT	3 cut(s)	1282, 5491, 7514
AjiI	CACGTC	3 cut(s)	1362, 2408, 5280
AjuI	GAANNNNNNNTTGG	6 cut(s)	4792, 4824, 6042, 6074, 7743, 7775
AleI	CACNNNNGTG	1 cut(s)	2996
AloI	GAACNNNNNNTCC	2 cut(s)	849, 881
Alw44I	GTGCAC	2 cut(s)	6161, 7256
AlwNI	CAGNNNCTG	7 cut(s)	1574, 1592, 1847, 2279, 5198, 5816, 6101
Ama87I	CYCGRG	4 cut(s)	49, 1973, 5940, 6224
Aor13HI	TCCGGA	2 cut(s)	146, 4692
ApaLI	GTGCAC	2 cut(s)	6161, 7256
ArsI	GACNNNNNNTTYG	2 cut(s)	6392, 6424
AsiGI	ACCGGT	1 cut(s)	2789
Asp700I	GAANNNNTTC	4 cut(s)	1562, 1912, 6618, 7677
Asp718I	GGTACC	1 cut(s)	5625
AspLEI	GCGC	8 cut(s)	280, 656, 690, 1098, 3354, 5049, 7446, 7813
AsuC2I	CCSGG	5 cut(s)	132, 141, 1974, 1975, 3094
AsuNHI	GCTAGC	1 cut(s)	7481
AvaI	CYCGRG	4 cut(s)	49, 1973, 5940, 6224
AxyI	CCTNAGG	3 cut(s)	1698, 6234, 7530
BaeGI	GKGCMC	4 cut(s)	3590, 6165, 7260, 7302
BalI	TGGCCA	3 cut(s)	4729, 6644, 6783
BamHI	GGATCC	2 cut(s)	2555, 3002
BanI	GGYRCC	6 cut(s)	235, 265, 653, 687, 3639, 5625
BanII	GRGCYC	3 cut(s)	50, 1305, 3525
BauI	CACGAG	4 cut(s)	382, 1107, 1365, 7307
BbsI	GAAGAC	4 cut(s)	18, 3484, 4377, 7339
BbvCI	CCTCAGC	3 cut(s)	1296, 3123, 5082
BceAI	ACGGC	7 cut(s)	317, 485, 641, 4208, 4811, 4973, 6267
BciVI	GTATCC	1 cut(s)	1972
BclI	TGATCA	1 cut(s)	2283
BcnI	CCSGG	5 cut(s)	132, 141, 1974, 1975, 3094
BcuI	ACTAGT	3 cut(s)	1282, 5491, 7514
BfmI	CTRYAG	4 cut(s)	1269, 4377, 5051, 5661
BfoI	RGCGCY	3 cut(s)	657, 691, 5050
BfrI	CTTAAG	4 cut(s)	2087, 4217, 6374, 7655
BfuAI	ACCTGC	1 cut(s)	814
BfuI	GTATCC	1 cut(s)	1972
BglI	GCCNNNNNGGC	2 cut(s)	2491, 5747
BglII	AGATCT	1 cut(s)	6976
BlpI	GCTNAGC	1 cut(s)	1623
BmcAI	AGTACT	2 cut(s)	1956, 7677
BmeRI	GACNNNNNGTC	2 cut(s)	3573, 6393
BmeT110I	CYCGRG	4 cut(s)	49, 1973, 5940, 6224
BmgBI	CACGTC	3 cut(s)	1362, 2408, 5280
BmtI	GCTAGC	1 cut(s)	7485
BpiI	GAAGAC	4 cut(s)	18, 3484, 4377, 7339
BplI	GAGNNNNNCTC	2 cut(s)	5229, 5261
BpmI	CTGGAG	7 cut(s)	1499, 1737, 4113, 4200, 4494, 5171, 7725
Bpu10I	CCTNAGC	7 cut(s)	1296, 2973, 3123, 4164, 5082, 5841, 7026
Bpu1102I	GCTNAGC	1 cut(s)	1623
BpuEI	CTTGAG	7 cut(s)	2159, 2613, 3332, 3806, 5543, 6094, 7610
BpuMI	CCSGG	5 cut(s)	132, 141, 1974, 1975, 3094
Bsa29I	ATCGAT	3 cut(s)	6563, 7405, 7882
BsaAI	YACGTR	4 cut(s)	214, 1826, 5738, 7460
BsaBI	GATNNNNATC	7 cut(s)	2448, 2544, 2715, 3060, 6018, 6981, 7875
BsaHI	GRCGYC	6 cut(s)	477, 654, 688, 1228, 2855, 6407
BsaI	GGTCTC	2 cut(s)	759, 6899
BsaWI	WCCGGW	5 cut(s)	146, 670, 2789, 2995, 4692
Bse118I	RCCGGY	2 cut(s)	262, 2789
Bse21I	CCTNAGG	3 cut(s)	1698, 6234, 7530
Bse3DI	GCAATG	7 cut(s)	936, 2342, 3347, 4494, 5509, 6070, 6939
Bse8I	GATNNNNATC	7 cut(s)	2448, 2544, 2715, 3060, 6018, 6981, 7875
BseAI	TCCGGA	2 cut(s)	146, 4692
BseCI	ATCGAT	3 cut(s)	6563, 7405, 7882
BseJI	GATNNNNATC	7 cut(s)	2448, 2544, 2715, 3060, 6018, 6981, 7875
BseMI	GCAATG	7 cut(s)	936, 2342, 3347, 4494, 5509, 6070, 6939
BseRI	GAGGAG	9 cut(s)	292, 356, 1313, 3516, 4796, 4916, 5923, 7370, 7518
BseSI	GKGCMC	4 cut(s)	3590, 6165, 7260, 7302
BseYI	CCCAGC	2 cut(s)	3930, 7929
BsgI	GTGCAG	7 cut(s)	2628, 2712, 4053, 5829, 6282, 6936, 7248
Bsh1236I	CGCG	6 cut(s)	105, 113, 278, 519, 3354, 6987
BshNI	GGYRCC	6 cut(s)	235, 265, 653, 687, 3639, 5625
BshTI	ACCGGT	1 cut(s)	2789
BshVI	ATCGAT	3 cut(s)	6563, 7405, 7882
BsiHKCI	CYCGRG	4 cut(s)	49, 1973, 5940, 6224
BslFI	GGGAC	6 cut(s)	692, 1744, 1956, 3561, 3989, 6205
BsmBI	CGTCTC	1 cut(s)	1368
BsmFI	GGGAC	6 cut(s)	692, 1744, 1956, 3561, 3989, 6205
BsmI	GAATGC	5 cut(s)	700, 2635, 2880, 3365, 4882
Bso31I	GGTCTC	2 cut(s)	759, 6899
BsoBI	CYCGRG	4 cut(s)	49, 1973, 5940, 6224
Bsp13I	TCCGGA	2 cut(s)	146, 4692
Bsp1407I	TGTACA	3 cut(s)	5029, 5127, 5707
Bsp1720I	GCTNAGC	1 cut(s)	1623
Bsp68I	TCGCGA	1 cut(s)	6987
BspDI	ATCGAT	3 cut(s)	6563, 7405, 7882
BspEI	TCCGGA	2 cut(s)	146, 4692
BspFNI	CGCG	6 cut(s)	105, 113, 278, 519, 3354, 6987
BspHI	TCATGA	2 cut(s)	2884, 3748
BspMAI	CTGCAG	4 cut(s)	1273, 4381, 5055, 5665
BspMI	ACCTGC	1 cut(s)	814
BspOI	GCTAGC	1 cut(s)	7485
BspQI	GCTCTTC	1 cut(s)	5301
BspT107I	GGYRCC	6 cut(s)	235, 265, 653, 687, 3639, 5625
BspTI	CTTAAG	4 cut(s)	2087, 4217, 6374, 7655
BspTNI	GGTCTC	2 cut(s)	759, 6899
BsrBI	CCGCTC	2 cut(s)	3820, 4541
BsrDI	GCAATG	7 cut(s)	936, 2342, 3347, 4494, 5509, 6070, 6939
BsrFI	RCCGGY	2 cut(s)	262, 2789
BsrGI	TGTACA	3 cut(s)	5029, 5127, 5707
BssAI	RCCGGY	2 cut(s)	262, 2789
BssNAI	GTATAC	3 cut(s)	614, 1276, 1661
BssNI	GRCGYC	6 cut(s)	477, 654, 688, 1228, 2855, 6407
BssSI	CACGAG	4 cut(s)	382, 1107, 1365, 7307
BssT1I	CCWWGG	2 cut(s)	438, 5087
Bst1107I	GTATAC	3 cut(s)	614, 1276, 1661
Bst2BI	CACGAG	4 cut(s)	382, 1107, 1365, 7307
Bst6I	CTCTTC	5 cut(s)	56, 3950, 4334, 4393, 5301
BstACI	GRCGYC	6 cut(s)	477, 654, 688, 1228, 2855, 6407
BstAFI	CTTAAG	4 cut(s)	2087, 4217, 6374, 7655
BstAPI	GCANNNNNTGC	4 cut(s)	1574, 5071, 5816, 7643
BstAUI	TGTACA	3 cut(s)	5029, 5127, 5707
BstBAI	YACGTR	4 cut(s)	214, 1826, 5738, 7460
BstDSI	CCRYGG	1 cut(s)	111
BstFNI	CGCG	6 cut(s)	105, 113, 278, 519, 3354, 6987
BstH2I	RGCGCY	3 cut(s)	657, 691, 5050
BstHHI	GCGC	8 cut(s)	280, 656, 690, 1098, 3354, 5049, 7446, 7813
BstSFI	CTRYAG	4 cut(s)	1269, 4377, 5051, 5661
BstSLI	GKGCMC	4 cut(s)	3590, 6165, 7260, 7302
BstSNI	TACGTA	1 cut(s)	1826
BstUI	CGCG	6 cut(s)	105, 113, 278, 519, 3354, 6987
BstV2I	GAAGAC	4 cut(s)	18, 3484, 4377, 7339
BstX2I	RGATCY	9 cut(s)	1393, 1418, 2555, 3002, 4128, 4804, 5472, 6976, 7102
BstXI	CCANNNNNNTGG	2 cut(s)	2213, 7309
BstYI	RGATCY	9 cut(s)	1393, 1418, 2555, 3002, 4128, 4804, 5472, 6976, 7102
BstZ17I	GTATAC	3 cut(s)	614, 1276, 1661
Bsu15I	ATCGAT	3 cut(s)	6563, 7405, 7882
Bsu36I	CCTNAGG	3 cut(s)	1698, 6234, 7530
BsuI	GTATCC	1 cut(s)	1972
BsuTUI	ATCGAT	3 cut(s)	6563, 7405, 7882
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	2 cut(s)	1454, 3551
BtrI	CACGTC	3 cut(s)	1362, 2408, 5280
BtsI	GCAGTG	7 cut(s)	2898, 3328, 3588, 4417, 4603, 5382, 5658
BtuMI	TCGCGA	1 cut(s)	6987
BveI	ACCTGC	1 cut(s)	814
CaiI	CAGNNNCTG	7 cut(s)	1574, 1592, 1847, 2279, 5198, 5816, 6101
CciI	TCATGA	2 cut(s)	2884, 3748
CfoI	GCGC	8 cut(s)	280, 656, 690, 1098, 3354, 5049, 7446, 7813
Cfr10I	RCCGGY	2 cut(s)	262, 2789
Cfr42I	CCGCGG	1 cut(s)	114
Cfr9I	CCCGGG	1 cut(s)	1973
ClaI	ATCGAT	3 cut(s)	6563, 7405, 7882
CseI	GACGC	7 cut(s)	111, 1236, 2213, 2844, 4382, 5142, 6396
CsiI	ACCWGGT	1 cut(s)	6865
CspAI	ACCGGT	1 cut(s)	2789
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
DinI	GGCGCC	2 cut(s)	655, 689
DraI	TTTAAA	3 cut(s)	756, 1119, 5161
DraIII	CACNNNGTG	1 cut(s)	2165
DriI	GACNNNNNGTC	2 cut(s)	3573, 6393
EaeI	YGGCCR	6 cut(s)	391, 1423, 4727, 4796, 6642, 6781
Eam1104I	CTCTTC	5 cut(s)	56, 3950, 4334, 4393, 5301
Eam1105I	GACNNNNNGTC	2 cut(s)	3573, 6393
EarI	CTCTTC	5 cut(s)	56, 3950, 4334, 4393, 5301
EciI	GGCGGA	2 cut(s)	487, 7089
Ecl136II	GAGCTC	1 cut(s)	3523
Eco105I	TACGTA	1 cut(s)	1826
Eco130I	CCWWGG	2 cut(s)	438, 5087
Eco147I	AGGCCT	2 cut(s)	1944, 2958
Eco24I	GRGCYC	3 cut(s)	50, 1305, 3525
Eco31I	GGTCTC	2 cut(s)	759, 6899
Eco32I	GATATC	3 cut(s)	3257, 3970, 7286
Eco53kI	GAGCTC	1 cut(s)	3523
Eco81I	CCTNAGG	3 cut(s)	1698, 6234, 7530
Eco88I	CYCGRG	4 cut(s)	49, 1973, 5940, 6224
EcoICRI	GAGCTC	1 cut(s)	3523
EcoO109I	RGGNCCY	4 cut(s)	706, 3575, 5078, 5987
EcoRI	GAATTC	4 cut(s)	405, 925, 3032, 6367
EcoRV	GATATC	3 cut(s)	3257, 3970, 7286
EcoT14I	CCWWGG	2 cut(s)	438, 5087
EcoT22I	ATGCAT	5 cut(s)	1554, 1657, 5730, 6795, 7795
EcoT38I	GRGCYC	3 cut(s)	50, 1305, 3525
EgeI	GGCGCC	2 cut(s)	655, 689
EheI	GGCGCC	2 cut(s)	655, 689
ErhI	CCWWGG	2 cut(s)	438, 5087
Esp3I	CGTCTC	1 cut(s)	1368
FaqI	GGGAC	6 cut(s)	692, 1744, 1956, 3561, 3989, 6205
FauNDI	CATATG	3 cut(s)	2094, 6001, 6526
FbaI	TGATCA	1 cut(s)	2283
FblI	GTMKAC	6 cut(s)	136, 613, 1275, 1660, 2419, 6693
FriOI	GRGCYC	3 cut(s)	50, 1305, 3525
GlaI	GCGC	8 cut(s)	279, 655, 689, 1097, 3353, 5048, 7445, 7812
GsaI	CCCAGC	2 cut(s)	3934, 7933
GsuI	CTGGAG	7 cut(s)	1499, 1737, 4113, 4200, 4494, 5171, 7725
HaeII	RGCGCY	3 cut(s)	657, 691, 5050
HgaI	GACGC	7 cut(s)	111, 1236, 2213, 2844, 4382, 5142, 6396
HhaI	GCGC	8 cut(s)	280, 656, 690, 1098, 3354, 5049, 7446, 7813
Hin1I	GRCGYC	6 cut(s)	477, 654, 688, 1228, 2855, 6407
Hin6I	GCGC	8 cut(s)	278, 654, 688, 1096, 3352, 5047, 7444, 7811
HinP1I	GCGC	8 cut(s)	278, 654, 688, 1096, 3352, 5047, 7444, 7811
HincII	GTYRAC	7 cut(s)	137, 1193, 2420, 2874, 4788, 5835, 7204
HindII	GTYRAC	7 cut(s)	137, 1193, 2420, 2874, 4788, 5835, 7204
HindIII	AAGCTT	7 cut(s)	897, 3262, 4821, 4949, 5037, 5843, 6773
Hpy99I	CGWCG	9 cut(s)	338, 341, 428, 479, 482, 662, 1801, 2229, 2409
Hsp92I	GRCGYC	6 cut(s)	477, 654, 688, 1228, 2855, 6407
HspAI	GCGC	8 cut(s)	278, 654, 688, 1096, 3352, 5047, 7444, 7811
KasI	GGCGCC	2 cut(s)	653, 687
KflI	GGGWCCC	1 cut(s)	706
Kpn2I	TCCGGA	2 cut(s)	146, 4692
KpnI	GGTACC	1 cut(s)	5629
Ksp22I	TGATCA	1 cut(s)	2283
KspI	CCGCGG	1 cut(s)	114
LguI	GCTCTTC	1 cut(s)	5301
MabI	ACCWGGT	1 cut(s)	6865
MbiI	CCGCTC	2 cut(s)	3820, 4541
MfeI	CAATTG	8 cut(s)	1317, 2295, 2313, 2531, 2591, 3543, 4731, 7776
MflI	RGATCY	9 cut(s)	1393, 1418, 2555, 3002, 4128, 4804, 5472, 6976, 7102
MlsI	TGGCCA	3 cut(s)	4729, 6644, 6783
MluNI	TGGCCA	3 cut(s)	4729, 6644, 6783
Mly113I	GGCGCC	2 cut(s)	654, 688
MmeI	TCCRAC	7 cut(s)	555, 1030, 1864, 2103, 3841, 3927, 7261
Mox20I	TGGCCA	3 cut(s)	4729, 6644, 6783
Mph1103I	ATGCAT	5 cut(s)	1554, 1657, 5730, 6795, 7795
MroI	TCCGGA	2 cut(s)	146, 4692
MroXI	GAANNNNTTC	4 cut(s)	1562, 1912, 6618, 7677
MscI	TGGCCA	3 cut(s)	4729, 6644, 6783
MslI	CAYNNNNRTG	7 cut(s)	174, 1350, 2024, 2061, 2996, 4365, 4575
Msp20I	TGGCCA	3 cut(s)	4729, 6644, 6783
MspA1I	CMGCKG	9 cut(s)	113, 1519, 1574, 2861, 3770, 4484, 5813, 6671, 7914
MspCI	CTTAAG	4 cut(s)	2087, 4217, 6374, 7655
MunI	CAATTG	8 cut(s)	1317, 2295, 2313, 2531, 2591, 3543, 4731, 7776
Mva1269I	GAATGC	5 cut(s)	700, 2635, 2880, 3365, 4882
MvnI	CGCG	6 cut(s)	105, 113, 278, 519, 3354, 6987
NarI	GGCGCC	2 cut(s)	654, 688
NciI	CCSGG	5 cut(s)	132, 141, 1974, 1975, 3094
NdeI	CATATG	3 cut(s)	2094, 6001, 6526
NheI	GCTAGC	1 cut(s)	7481
NmeAIII	GCCGAG	2 cut(s)	724, 5403
NruI	TCGCGA	1 cut(s)	6987
NsiI	ATGCAT	5 cut(s)	1554, 1657, 5730, 6795, 7795
OliI	CACNNNNGTG	1 cut(s)	2996
PaeI	GCATGC	5 cut(s)	1821, 2018, 2381, 5732, 7793
PaeR7I	CTCGAG	1 cut(s)	6224
PagI	TCATGA	2 cut(s)	2884, 3748
PaqCI	CACCTGC	1 cut(s)	814
PceI	AGGCCT	2 cut(s)	1944, 2958
PciI	ACATGT	4 cut(s)	1858, 4741, 5569, 7490
PciSI	GCTCTTC	1 cut(s)	5301
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 483
PctI	GAATGC	5 cut(s)	700, 2635, 2880, 3365, 4882
PdmI	GAANNNNTTC	4 cut(s)	1562, 1912, 6618, 7677
PflMI	CCANNNNNTGG	4 cut(s)	1157, 1670, 6794, 7070
PfoI	TCCNGGA	3 cut(s)	1609, 3172, 4297
PinAI	ACCGGT	1 cut(s)	2789
PluTI	GGCGCC	2 cut(s)	657, 691
Ppu21I	YACGTR	4 cut(s)	214, 1826, 5738, 7460
PpuMI	RGGWCCY	3 cut(s)	706, 3575, 5987
PscI	ACATGT	4 cut(s)	1858, 4741, 5569, 7490
PsiI	TTATAA	3 cut(s)	5799, 6812, 7866
Psp124BI	GAGCTC	1 cut(s)	3525
Psp5II	RGGWCCY	3 cut(s)	706, 3575, 5987
PspFI	CCCAGC	2 cut(s)	3930, 7929
PspPPI	RGGWCCY	3 cut(s)	706, 3575, 5987
PstI	CTGCAG	4 cut(s)	1273, 4381, 5055, 5665
PstNI	CAGNNNCTG	7 cut(s)	1574, 1592, 1847, 2279, 5198, 5816, 6101
PsuI	RGATCY	9 cut(s)	1393, 1418, 2555, 3002, 4128, 4804, 5472, 6976, 7102
PvuII	CAGCTG	6 cut(s)	1574, 2861, 3770, 4484, 5813, 6671
RruI	TCGCGA	1 cut(s)	6987
RseI	CAYNNNNRTG	7 cut(s)	174, 1350, 2024, 2061, 2996, 4365, 4575
SacI	GAGCTC	1 cut(s)	3525
SacII	CCGCGG	1 cut(s)	114
SalI	GTCGAC	2 cut(s)	135, 2418
SapI	GCTCTTC	1 cut(s)	5301
SbfI	CCTGCAGG	1 cut(s)	5055
ScaI	AGTACT	2 cut(s)	1956, 7677
SdaI	CCTGCAGG	1 cut(s)	5055
SexAI	ACCWGGT	1 cut(s)	6865
SfcI	CTRYAG	4 cut(s)	1269, 4377, 5051, 5661
SfoI	GGCGCC	2 cut(s)	655, 689
Sfr274I	CTCGAG	1 cut(s)	6224
Sfr303I	CCGCGG	1 cut(s)	114
SgrBI	CCGCGG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	6224
SmaI	CCCGGG	1 cut(s)	1975
SmiI	ATTTAAAT	1 cut(s)	5161
SmiMI	CAYNNNNRTG	7 cut(s)	174, 1350, 2024, 2061, 2996, 4365, 4575
SnaBI	TACGTA	1 cut(s)	1826
SpeI	ACTAGT	3 cut(s)	1282, 5491, 7514
SphI	GCATGC	5 cut(s)	1821, 2018, 2381, 5732, 7793
Sse8387I	CCTGCAGG	1 cut(s)	5055
SseBI	AGGCCT	2 cut(s)	1944, 2958
SspDI	GGCGCC	2 cut(s)	653, 687
SspI	AATATT	2 cut(s)	4833, 5483
SstI	GAGCTC	1 cut(s)	3525
StuI	AGGCCT	2 cut(s)	1944, 2958
StyI	CCWWGG	2 cut(s)	438, 5087
SwaI	ATTTAAAT	1 cut(s)	5161
TatI	WGTACW	8 cut(s)	1020, 1954, 5029, 5127, 5707, 5786, 7675, 7817
TauI	GCSGC	7 cut(s)	113, 116, 231, 396, 519, 1793, 5258
TspGWI	ACGGA	7 cut(s)	211, 448, 572, 576, 761, 3962, 7817
TspMI	CCCGGG	1 cut(s)	1973
Van91I	CCANNNNNTGG	4 cut(s)	1157, 1670, 6794, 7070
Vha464I	CTTAAG	4 cut(s)	2087, 4217, 6374, 7655
VneI	GTGCAC	2 cut(s)	6161, 7256
XbaI	TCTAGA	1 cut(s)	2474
XcmI	CCANNNNNNNNNTGG	9 cut(s)	436, 1074, 1505, 3225, 4518, 5922, 6791, 6918, 7135
XhoI	CTCGAG	1 cut(s)	6224
XmaI	CCCGGG	1 cut(s)	1973
XmiI	GTMKAC	6 cut(s)	136, 613, 1275, 1660, 2419, 6693
XmnI	GAANNNNTTC	4 cut(s)	1562, 1912, 6618, 7677
ZraI	GACGTC	1 cut(s)	478
ZrmI	AGTACT	2 cut(s)	1956, 7677
Zsp2I	ATGCAT	5 cut(s)	1554, 1657, 5730, 6795, 7795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.