Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009958

Physical Location & Seq

Genomic Coordinates Reverse (-)

12431025 .. 12433046

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGTATGCGAATTTAGCAAAAGGCCAAGCATTTCCCTTGGCAATTAGGGTTTGTTCGAGGCCCGAATCTTTTCACACCTCAAAGTTTCAATCTTTACAAATCGGGTCTCATCCAAAACCCCCAATAAACCTTAGGTCGATCAAACTCACAAAACCAACATGCGGGTTTGGTGAAAAAAATTGTGGGTTGTCACATTTGGTTCGTTTTTCAACCGGTTCTTATTGTGAGTTTCTGGAAACTGGGGTTGTTGCAAAACCCAGAAGTGTTTCTGGTGGGTTTAGGATTACAAGTGGTGCACAGAGTTGGTGTTTTGTAAGAGGTAGAGGTTTTTCGAGTTGCTCGGGTCAGGGAGTTGATGGAGGGAGTGGTGTGGGTAGAGCTAGGAAAAGACTCCCGTGGTTGCCGGCAGCAAAAGCTAGGGGAGCAAAAGGGTTGGAGAAGGGAACTACGGCGAAGACATCTGTTTCGTCTTGGGAGCAATCTGCTAAGAGGTTAGAGGAAGTTAGTGATAATGGTTCTTGGGGAGAAGCGGCAAAGAGATTAGATGGAGATAGTAGTGAGTCGTCTTGGGGAAAATCGGGAAATAGGTTAGAGGAAGAAACAAATTCGAAAACTGGCCATGCTTCTTGGGATGTGTCAAGAAAAAATTACGTTAGGAAAAGTGGTCCACTGCAGTATGGGAGTAGAGAAGGTAGAACTGAAAGGGGAACTTCGGTAAAGGATCGTCAGAGTGATCACCGTGGGAGGGACAAAAGATTGGACGAAGCCGATACAGCAAAAAGTTATGTTAGGAAAAGTGGTACATTGGAGCAATGGGGTAGAGAAAGTAGAACTGGAAGGGGAAGTGTGGTAAAGGATCATCAGAGTGATTACCGAGGGAGGGACAGAAGATTTGAGAAAGCTGATACAGAAGGAGATGTTGAAGAAGAAGGAGATGAACAAGAAGAAGAAATGGAGGCTGTTGATGATCCAAGGTGGGATCGTATTCAAAACAAGTTCAGTGGAATGGAAGATGTAAAACCTGGACGTGAGAGACCTGAGTTTCGAAGGTGGAATAGGCAGGAAGATTGGGGTAAGAAGACATGGAAAGAGGCTACTGAATCGTCCGTGCCTAGGATGATTGGCCAAAGTGTTTATGGCGTTGGTCCAGTTTTGGCTGCTTTGTCAGCTGGAAGAAGAGAATTTTATGCATTGTATGTTCAAGAAGGGATGGATTTGAGCAAAAATAATAGGAAGAAGAAGGACAAGAAGGGCTTTGAAAGAATTTTAATGATGGCTGACAAGATTGGGTTAAACGTAAAGGATGTGTCCAAGCATGATCTTAATATGGCTACTGATAATCGACCTCATCAGGGTCTGGTTCTAGATGCTTCTCCGTTGGAGATGGTGAAAATTAACGAATTGGACCCCGTTTCGGTTGAGGAAGGTAAGGGCTCTCTTTGGGTTGCTTTGGATGAGGTTACGGATCCTCAGAATGTGGGAGCAATCATCAGGTCTGCTTACTTCTTTGGAGCTTCTGGGGTGGTGTTATGTGCCAAGAATTCAGCTCCACTGAGTGGTGTTGTGAGCAAAGCAAGTGCAGGCTCACTTGAGTTGATGGAGTTGAGATACTGCAAGAATATGATGCAGTTCCTAACATCCTCAACCGAAAATGGTTGGCGAGTTCTTGGAGGTTCTGTTTCTGCCAAGGCTATACCTTTGAACAAGGTTGCACCTAGTGTACCAACAATTCTTGTTCTGGGAAGTGAGGGCACTGGGTTGAGACCTTTGGTGGAAAGATCTTGCACTGATTTGATTAGAATCCCGGGGAATATTCCCATGGAAATTACTGCTGGTGGAGTTGATGATACTGAAACCGTGGAAGGGAATCATGCGTGCTCAGCTGAAGAGATCCGATCATTTTTGGCCGTGGAGAGCTTAAATGTCAGCGTTGCAGCTGGTGTGTTGCTTCATCACTTAACAGGAAACAATAACGATGAGGATGTCGATGCAGTTAATCAGCAGACTGACGAACTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000451 GO:0000453 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016435 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070039 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SpoU_methylase SpoU_sub_bind

Protein Analysis

674

Amino Acids

73.79

Weight (kDa)

8.18

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SpoU_sub_bind	PF08032	378 - 462	6.4e-10	RNA 2'-O ribose methyltransferase substrate binding
SpoU_methylase	PF00588	480 - 604	9.2e-26	SpoU rRNA Methylase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19870
fragaria_vesca	FvH4_1g06150 FvH4_1g06190
malus_domestica	MD02G1065700.v1.1 MD15G1196600.v1.1
prunus_persica	Prupe.7G219800_v2.0.a1 Prupe.7G219800_v2.0.a1
pyrus_communis	pycom02g05180 pycom02g05220 pycom15g17570
rosa_chinensis	RchiOBHm_Chr2g0091911
rosa_laevigata	RLG00000016260
rosa_multiflora	Rmu_sc0031557.1_g000002 Rmu_sc0031558.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149620
rosa_rugosa	Rorug02G0021600
rosa_samantha	Rh2AG067200 Rh2BG066400 Rh2CG067700 Rh2DG066300
rosa_wichuraiana	Rw2G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1556
AciI	CCGC	2 cut(s)	162, 530
AclWI	GGATC	7 cut(s)	729, 864, 962, 987, 1460, 1473, 1885
AcoI	YGGCCR	3 cut(s)	616, 1123, 1905
AcsI	RAATTY	5 cut(s)	10, 604, 1181, 1263, 1540
AcuI	CTGAAG	1 cut(s)	1905
AdeI	CACNNNGTG	2 cut(s)	1556, 1718
AfaI	GTAC	2 cut(s)	802, 1722
AfiI	CCNNNNNNNGG	8 cut(s)	161, 745, 880, 1113, 1352, 1414, 1556, 1863
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	7 cut(s)	89, 210, 923, 989, 1202, 1259, 1702
AjiI	CACGTC	1 cut(s)	1028
AjnI	CCWGG	1 cut(s)	1021
AluBI	AGCT	9 cut(s)	380, 416, 902, 1169, 1514, 1547, 1883, 1917, 1937
AluI	AGCT	9 cut(s)	380, 416, 902, 1169, 1514, 1547, 1883, 1917, 1937
Alw21I	GWGCWC	2 cut(s)	298, 1880
Alw26I	GTCTC	3 cut(s)	111, 1027, 1756
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	7 cut(s)	729, 864, 962, 987, 1460, 1473, 1885
AlwNI	CAGNNNCTG	1 cut(s)	1357
Ama87I	CYCGRG	2 cut(s)	340, 1804
AoxI	GGCC	5 cut(s)	22, 59, 616, 1123, 1905
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	3 cut(s)	407, 1157, 1934
ApoI	RAATTY	5 cut(s)	10, 604, 1181, 1263, 1540
ArsI	GACNNNNNNTTYG	6 cut(s)	448, 480, 875, 907, 1026, 1058
AsiGI	ACCGGT	1 cut(s)	212
Asp700I	GAANNNNTTC	2 cut(s)	69, 265
AspA2I	CCTAGG	1 cut(s)	1112
AspS9I	GGNCC	4 cut(s)	60, 665, 1145, 1405
AsuC2I	CCSGG	2 cut(s)	1805, 1806
AsuHPI	GGTGA	3 cut(s)	182, 728, 1399
AsuII	TTCGAA	2 cut(s)	608, 1045
AvaI	CYCGRG	2 cut(s)	340, 1804
AvaII	GGWCC	3 cut(s)	665, 1145, 1405
AvrII	CCTAGG	1 cut(s)	1112
AxyI	CCTNAGG	1 cut(s)	131
BaeGI	GKGCMC	2 cut(s)	298, 1754
BalI	TGGCCA	2 cut(s)	618, 1125
BamHI	GGATCC	1 cut(s)	1465
BanII	GRGCYC	1 cut(s)	1436
BbsI	GAAGAC	2 cut(s)	461, 1085
Bbv12I	GWGCWC	2 cut(s)	298, 1880
BbvI	GCAGC	3 cut(s)	419, 1144, 1946
BccI	CCATC	6 cut(s)	350, 539, 1204, 1267, 1378, 1591
BceAI	ACGGC	2 cut(s)	465, 1892
BciT130I	CCWGG	1 cut(s)	1023
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	2 cut(s)	1805, 1806
BcoDI	GTCTC	3 cut(s)	111, 1027, 1756
BfaI	CTAG	5 cut(s)	381, 417, 1113, 1364, 1716
BfmI	CTRYAG	1 cut(s)	671
BglII	AGATCT	1 cut(s)	1778
BisI	GCNGC	4 cut(s)	408, 531, 1158, 1935
BlnI	CCTAGG	1 cut(s)	1112
BlpI	GCTNAGC	1 cut(s)	1879
BlsI	GCNGC	4 cut(s)	409, 532, 1159, 1936
Bme1390I	CCNGG	3 cut(s)	1023, 1805, 1806
Bme18I	GGWCC	3 cut(s)	665, 1145, 1405
BmeT110I	CYCGRG	2 cut(s)	340, 1804
BmgBI	CACGTC	1 cut(s)	1028
BmgT120I	GGNCC	4 cut(s)	60, 665, 1145, 1405
BmiI	GGNNCC	2 cut(s)	1407, 1467
BmrFI	CCNGG	3 cut(s)	1023, 1805, 1806
BmrI	ACTGGG	2 cut(s)	249, 1764
BmsI	GCATC	3 cut(s)	1357, 1614, 1978
BmuI	ACTGGG	2 cut(s)	249, 1764
BpiI	GAAGAC	2 cut(s)	461, 1085
Bpu1102I	GCTNAGC	1 cut(s)	1879
Bpu14I	TTCGAA	2 cut(s)	608, 1045
BpuEI	CTTGAG	1 cut(s)	1610
BpuMI	CCSGG	2 cut(s)	1805, 1806
BsaBI	GATNNNNATC	1 cut(s)	1799
BsaI	GGTCTC	3 cut(s)	111, 1027, 1756
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	1662, 1692
Bsc4I	CCNNNNNNNGG	8 cut(s)	161, 745, 880, 1113, 1352, 1414, 1556, 1863
Bse118I	RCCGGY	2 cut(s)	212, 403
Bse1I	ACTGG	5 cut(s)	244, 619, 838, 1148, 1759
Bse21I	CCTNAGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	818
Bse8I	GATNNNNATC	1 cut(s)	1799
BseBI	CCWGG	1 cut(s)	1023
BseGI	GGATG	8 cut(s)	109, 637, 1122, 1215, 1309, 1459, 1637, 1987
BseJI	GATNNNNATC	1 cut(s)	1799
BseLI	CCNNNNNNNGG	8 cut(s)	161, 745, 880, 1113, 1352, 1414, 1556, 1863
BseMI	GCAATG	1 cut(s)	818
BseMII	CTCAG	4 cut(s)	1029, 1484, 1544, 1893
BseNI	ACTGG	5 cut(s)	244, 619, 838, 1148, 1759
BseSI	GKGCMC	2 cut(s)	298, 1754
BseXI	GCAGC	3 cut(s)	419, 1144, 1946
BsgI	GTGCAG	1 cut(s)	1599
BshFI	GGCC	5 cut(s)	24, 61, 618, 1125, 1907
BshTI	ACCGGT	1 cut(s)	212
BsiHKAI	GWGCWC	2 cut(s)	298, 1880
BsiHKCI	CYCGRG	2 cut(s)	340, 1804
BsiSI	CCGG	3 cut(s)	213, 404, 1805
BslFI	GGGAC	2 cut(s)	761, 896
BslI	CCNNNNNNNGG	8 cut(s)	161, 745, 880, 1113, 1352, 1414, 1556, 1863
BsmAI	GTCTC	3 cut(s)	111, 1027, 1756
BsmFI	GGGAC	2 cut(s)	761, 896
BsnI	GGCC	5 cut(s)	24, 61, 618, 1125, 1907
Bso31I	GGTCTC	3 cut(s)	111, 1027, 1756
BsoBI	CYCGRG	2 cut(s)	340, 1804
Bsp119I	TTCGAA	2 cut(s)	608, 1045
Bsp1286I	GDGCHC	4 cut(s)	298, 1436, 1754, 1880
Bsp1720I	GCTNAGC	1 cut(s)	1879
Bsp19I	CCATGG	1 cut(s)	1818
BspACI	CCGC	2 cut(s)	162, 530
BspANI	GGCC	5 cut(s)	24, 61, 618, 1125, 1907
BspCNI	CTCAG	4 cut(s)	1030, 1483, 1545, 1892
BspLI	GGNNCC	2 cut(s)	1407, 1467
BspMAI	CTGCAG	1 cut(s)	675
BspPI	GGATC	7 cut(s)	729, 864, 962, 987, 1460, 1473, 1885
BspT104I	TTCGAA	2 cut(s)	608, 1045
BspTNI	GGTCTC	3 cut(s)	111, 1027, 1756
BsrDI	GCAATG	1 cut(s)	818
BsrFI	RCCGGY	2 cut(s)	212, 403
BsrI	ACTGG	5 cut(s)	244, 619, 838, 1148, 1759
BssAI	RCCGGY	2 cut(s)	212, 403
BssT1I	CCWWGG	5 cut(s)	36, 971, 1112, 1686, 1818
Bst2UI	CCWGG	1 cut(s)	1023
Bst4CI	ACNGT	2 cut(s)	740, 1858
Bst6I	CTCTTC	2 cut(s)	1171, 1881
BstBI	TTCGAA	2 cut(s)	608, 1045
BstC8I	GCNNGC	3 cut(s)	405, 1582, 1876
BstDEI	CTNAG	6 cut(s)	131, 486, 1038, 1470, 1553, 1879
BstDSI	CCRYGG	5 cut(s)	395, 739, 1818, 1857, 1908
BstF5I	GGATG	8 cut(s)	109, 637, 1122, 1215, 1309, 1459, 1637, 1987
BstMAI	GTCTC	3 cut(s)	111, 1027, 1756
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 413, 422, 773, 1166, 1880
BstNI	CCWGG	1 cut(s)	1023
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	3 cut(s)	1021, 1803, 1804
BstSFI	CTRYAG	1 cut(s)	671
BstSLI	GKGCMC	2 cut(s)	298, 1754
BstV1I	GCAGC	3 cut(s)	419, 1144, 1946
BstV2I	GAAGAC	2 cut(s)	461, 1085
BstX2I	RGATCY	3 cut(s)	1465, 1778, 1890
BstYI	RGATCY	3 cut(s)	1465, 1778, 1890
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	5 cut(s)	24, 61, 618, 1125, 1907
BtgI	CCRYGG	5 cut(s)	395, 739, 1818, 1857, 1908
BtrI	CACGTC	1 cut(s)	1028
BtsCI	GGATG	8 cut(s)	109, 637, 1122, 1215, 1309, 1459, 1637, 1987
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	5 cut(s)	668, 1006, 1550, 1752, 1785
Cac8I	GCNNGC	3 cut(s)	405, 1582, 1876
CaiI	CAGNNNCTG	1 cut(s)	1357
Cfr10I	RCCGGY	2 cut(s)	212, 403
Cfr13I	GGNCC	4 cut(s)	60, 665, 1145, 1405
Cfr9I	CCCGGG	1 cut(s)	1804
Csp6I	GTAC	2 cut(s)	801, 1721
CspAI	ACCGGT	1 cut(s)	212
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	6 cut(s)	159, 620, 1083, 1316, 1819, 1871
CviQI	GTAC	2 cut(s)	801, 1721
DdeI	CTNAG	6 cut(s)	131, 486, 1038, 1470, 1553, 1879
DraIII	CACNNNGTG	2 cut(s)	1556, 1718
EaeI	YGGCCR	3 cut(s)	616, 1123, 1905
Eam1104I	CTCTTC	2 cut(s)	1171, 1881
EarI	CTCTTC	2 cut(s)	1171, 1881
Eco130I	CCWWGG	5 cut(s)	36, 971, 1112, 1686, 1818
Eco24I	GRGCYC	1 cut(s)	1436
Eco31I	GGTCTC	3 cut(s)	111, 1027, 1756
Eco47I	GGWCC	3 cut(s)	665, 1145, 1405
Eco57I	CTGAAG	1 cut(s)	1905
Eco81I	CCTNAGG	1 cut(s)	131
Eco88I	CYCGRG	2 cut(s)	340, 1804
EcoRI	GAATTC	1 cut(s)	1540
EcoRII	CCWGG	1 cut(s)	1021
EcoT14I	CCWWGG	5 cut(s)	36, 971, 1112, 1686, 1818
EcoT22I	ATGCAT	1 cut(s)	1192
EcoT38I	GRGCYC	1 cut(s)	1436
ErhI	CCWWGG	5 cut(s)	36, 971, 1112, 1686, 1818
FaeI	CATG	6 cut(s)	162, 623, 1086, 1319, 1822, 1874
FalI	AAGNNNNNCTT	4 cut(s)	694, 726, 1238, 1270
FaqI	GGGAC	2 cut(s)	761, 896
FatI	CATG	6 cut(s)	158, 619, 1082, 1315, 1818, 1870
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	4 cut(s)	408, 531, 1158, 1935
FokI	GGATG	8 cut(s)	96, 644, 1129, 1222, 1316, 1466, 1624, 1994
FriOI	GRGCYC	1 cut(s)	1436
Fsp4HI	GCNGC	4 cut(s)	408, 531, 1158, 1935
FspBI	CTAG	5 cut(s)	381, 417, 1113, 1364, 1716
GluI	GCNGC	4 cut(s)	408, 531, 1158, 1935
HaeIII	GGCC	5 cut(s)	24, 61, 618, 1125, 1907
HapII	CCGG	3 cut(s)	213, 404, 1805
Hin1II	CATG	6 cut(s)	162, 623, 1086, 1319, 1822, 1874
HinfI	GANTC	6 cut(s)	65, 390, 560, 1100, 1800, 1867
HpaII	CCGG	3 cut(s)	213, 404, 1805
HphI	GGTGA	3 cut(s)	182, 728, 1399
Hpy166II	GTNNAC	3 cut(s)	296, 668, 1721
Hpy188I	TCNGA	4 cut(s)	729, 864, 1473, 1895
Hpy188III	TCNNGA	5 cut(s)	233, 579, 639, 1202, 1364
Hpy8I	GTNNAC	3 cut(s)	296, 668, 1721
HpyCH4III	ACNGT	2 cut(s)	740, 1858
HpyCH4IV	ACGT	3 cut(s)	651, 1027, 1296
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 413, 422, 773, 1166, 1880
HpyF3I	CTNAG	6 cut(s)	131, 486, 1038, 1470, 1553, 1879
HpySE526I	ACGT	3 cut(s)	651, 1027, 1296
Hsp92II	CATG	6 cut(s)	162, 623, 1086, 1319, 1822, 1874
KroI	GCCGGC	1 cut(s)	403
KroNI	GCCGGC	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	733
LmnI	GCTCC	6 cut(s)	422, 475, 808, 1481, 1511, 1552
Lsp1109I	GCAGC	3 cut(s)	419, 1144, 1946
LweI	GCATC	3 cut(s)	1357, 1614, 1978
MaeI	CTAG	5 cut(s)	381, 417, 1113, 1364, 1716
MaeII	ACGT	3 cut(s)	651, 1027, 1296
MaeIII	GTNAC	2 cut(s)	189, 1459
MflI	RGATCY	3 cut(s)	1465, 1778, 1890
MhlI	GDGCHC	4 cut(s)	298, 1436, 1754, 1880
MlsI	TGGCCA	2 cut(s)	618, 1125
MluNI	TGGCCA	2 cut(s)	618, 1125
MlyI	GAGTC	2 cut(s)	384, 569
MmeI	TCCRAC	2 cut(s)	414, 1359
Mox20I	TGGCCA	2 cut(s)	618, 1125
Mph1103I	ATGCAT	1 cut(s)	1192
MroNI	GCCGGC	1 cut(s)	403
MroXI	GAANNNNTTC	2 cut(s)	69, 265
MscI	TGGCCA	2 cut(s)	618, 1125
MseI	TTAA	7 cut(s)	1268, 1292, 1323, 1395, 1919, 1958, 1995
MslI	CAYNNNNRTG	1 cut(s)	864
Msp20I	TGGCCA	2 cut(s)	618, 1125
MspA1I	CMGCKG	3 cut(s)	1169, 1883, 1937
MspI	CCGG	3 cut(s)	213, 404, 1805
MspR9I	CCNGG	3 cut(s)	1023, 1805, 1806
MvaI	CCWGG	1 cut(s)	1023
MwoI	GCNNNNNNNGC	6 cut(s)	14, 413, 422, 773, 1166, 1880
NaeI	GCCGGC	1 cut(s)	405
NciI	CCSGG	2 cut(s)	1805, 1806
NcoI	CCATGG	1 cut(s)	1818
NgoMIV	GCCGGC	1 cut(s)	403
NlaIII	CATG	6 cut(s)	162, 623, 1086, 1319, 1822, 1874
NlaIV	GGNNCC	2 cut(s)	1407, 1467
NmuCI	GTSAC	1 cut(s)	189
NsiI	ATGCAT	1 cut(s)	1192
NspI	RCATGY	1 cut(s)	162
NspV	TTCGAA	2 cut(s)	608, 1045
PdiI	GCCGGC	1 cut(s)	405
PdmI	GAANNNNTTC	2 cut(s)	69, 265
PfeI	GAWTC	4 cut(s)	65, 1100, 1800, 1867
PflMI	CCANNNNNTGG	1 cut(s)	1556
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	409, 532, 1159, 1936
PleI	GAGTC	2 cut(s)	384, 568
PpsI	GAGTC	2 cut(s)	384, 568
Psp6I	CCWGG	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	1021
PspN4I	GGNNCC	2 cut(s)	1407, 1467
PspPI	GGNCC	4 cut(s)	60, 665, 1145, 1405
PstI	CTGCAG	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	1357
PsuI	RGATCY	3 cut(s)	1465, 1778, 1890
PvuII	CAGCTG	3 cut(s)	1169, 1883, 1937
RsaI	GTAC	2 cut(s)	802, 1722
RsaNI	GTAC	2 cut(s)	801, 1721
RseI	CAYNNNNRTG	1 cut(s)	864
SaqAI	TTAA	7 cut(s)	1268, 1292, 1323, 1395, 1919, 1958, 1995
SatI	GCNGC	4 cut(s)	408, 531, 1158, 1935
Sau96I	GGNCC	4 cut(s)	60, 665, 1145, 1405
SchI	GAGTC	2 cut(s)	384, 569
ScrFI	CCNGG	3 cut(s)	1023, 1805, 1806
SduI	GDGCHC	4 cut(s)	298, 1436, 1754, 1880
SfaNI	GCATC	3 cut(s)	1357, 1614, 1978
SfcI	CTRYAG	1 cut(s)	671
SfuI	TTCGAA	2 cut(s)	608, 1045
SinI	GGWCC	3 cut(s)	665, 1145, 1405
SmaI	CCCGGG	1 cut(s)	1806
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	1589
SmoI	CTYRAG	1 cut(s)	1589
SsiI	CCGC	2 cut(s)	162, 530
SspI	AATATT	1 cut(s)	1813
SspMI	CTAG	5 cut(s)	381, 417, 1113, 1364, 1716
StyD4I	CCNGG	3 cut(s)	1021, 1803, 1804
StyI	CCWWGG	5 cut(s)	36, 971, 1112, 1686, 1818
TaaI	ACNGT	2 cut(s)	740, 1858
TaiI	ACGT	3 cut(s)	654, 1030, 1299
TaqI	TCGA	7 cut(s)	56, 137, 332, 608, 1045, 1342, 1986
TauI	GCSGC	1 cut(s)	533
TfiI	GAWTC	4 cut(s)	65, 1100, 1800, 1867
Tru1I	TTAA	7 cut(s)	1268, 1292, 1323, 1395, 1919, 1958, 1995
Tru9I	TTAA	7 cut(s)	1268, 1292, 1323, 1395, 1919, 1958, 1995
TscAI	CASTG	5 cut(s)	675, 1006, 1557, 1759, 1792
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	3 cut(s)	407, 1157, 1934
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	951, 1940
TspGWI	ACGGA	3 cut(s)	1096, 1365, 1478
TspMI	CCCGGG	1 cut(s)	1804
TspRI	CASTG	5 cut(s)	675, 1006, 1557, 1759, 1792
Van91I	CCANNNNNTGG	1 cut(s)	1556
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	3 cut(s)	665, 1145, 1405
XapI	RAATTY	5 cut(s)	10, 604, 1181, 1263, 1540
XbaI	TCTAGA	1 cut(s)	1363
XceI	RCATGY	1 cut(s)	162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1133
XmaI	CCCGGG	1 cut(s)	1804
XmaJI	CCTAGG	1 cut(s)	1112
XmnI	GAANNNNTTC	2 cut(s)	69, 265
XspI	CTAG	5 cut(s)	381, 417, 1113, 1364, 1716
Zsp2I	ATGCAT	1 cut(s)	1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.