pycom15g17740

acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012044
Physical Location & Seq
Forward (+)
12583628 .. 12585827
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGGCCTCCGTTCGCCACCGCCCTCTCCTGCTCCTCATCACCCTCCTCGCAATCCCCACGTCCTTATCATCCCAATCCATCATCCAAATGCCAACGAAACGACACCGCGTCTCCGCCTCCGACGATAGCCTCTTCTGCGACAGCTGGAGATTCTCCGTCGAGACCAACGACGCCGGGACCTGGTCCAACATTCCGTCCAGGTGCGTCGGGTTCGTCCAGAACTACATGACCGGCGACCGGTACCTGTCCGATTCGGCGGCCGTCGCGAATTTCTCGCTGAGCTTCGCGAAGGGGGTGACCATAGGCGGCGATGGGAAGGACGCGTGGGTGTTCGACATCGATGAGACTCTGCTTTCGAATTTGCCCTACTATCAGGCACATGGATTCGGATCAGAGACGTTCGATGAAGCATCTTTCGATGAGTGGGTGGAGTTGGCTGAGGCCCCTGCTCTCCCAGCAAGTTTAAATCTATACAGTCAGCTTGAGCGGTTGGGTTTCAAGATTTTTCTGTTAACTGGGCGGAGCGAATATCAGAGAAATGACACCGCGAAAAACCTTCTAGTTGCAGGTTACAATAATTGGGAGAGGCTGCTGCTGAGAGGACCTTCTGATCAAGGAACACTTGCCACGCTCTTCAAATCCCAGAAGAGATCGGACTTGATAAATGAAGGTTATCGAATTCATGGGAGCTCGGGAGATCAATGGAGTGATTTGGTGGGTTTTGCAATTGCTCAACGATCCTTTAAACTTCCAAACCCAATGTATTACATTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

259

Amino Acids

28.79

Weight (kDa)

5.4

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_phosphat_B PF03767 37 - 257 9.5e-78 HAD superfamily, subfamily IIIB (Acid phosphatase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29260 AT4G29270
fragaria_vesca FvH4_1g06500
malus_domestica MD02G1068300.v1.1
prunus_persica Prupe.7G217300_v2.0.a1
pyrus_communis pycom02g05410 pycom08g17150 pycom15g17740
rosa_chinensis RchiOBHm_Chr2g0092251
rosa_laevigata RLG00000016290
rosa_multiflora Rmu_sc0000524.1_g000032 Rmu_sc0030540.1_g000001
rosa_roxburghii Rroxscaffold_2G00149330
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG069900 Rh2BG069400 Rh2CG070600 Rh2DG068400
rosa_wichuraiana Rw2G006230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 557
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 240
AccBSI CCGCTC 1 cut(s) 487
AccII CGCG 5 cut(s) 108, 266, 287, 323, 548
AciI CCGC 8 cut(s) 19, 106, 114, 257, 306, 487, 520, 546
AclWI GGATC 2 cut(s) 397, 732
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 3 cut(s) 268, 358, 678
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 180, 237
AflIII ACRYGT 1 cut(s) 321
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 499, 637
AhdI GACNNNNNGTC 1 cut(s) 107
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 2 cut(s) 179, 197
AluBI AGCT 4 cut(s) 144, 282, 481, 690
AluI AGCT 4 cut(s) 144, 282, 481, 690
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 4 cut(s) 115, 155, 338, 389
AlwI GGATC 2 cut(s) 397, 732
Ama87I CYCGRG 1 cut(s) 691
AoxI GGCC 3 cut(s) 3, 258, 441
ApeKI GCWGC 2 cut(s) 589, 592
ApoI RAATTY 3 cut(s) 268, 358, 678
ArsI GACNNNNNNTTYG 2 cut(s) 337, 369
AsiGI ACCGGT 1 cut(s) 237
Asp718I GGTACC 1 cut(s) 240
AspS9I GGNCC 4 cut(s) 177, 183, 442, 602
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 31, 307
AsuII TTCGAA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 691
AvaII GGWCC 3 cut(s) 177, 183, 602
BanI GGYRCC 1 cut(s) 240
BanII GRGCYC 1 cut(s) 692
Bbv12I GWGCWC 1 cut(s) 692
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 2 cut(s) 576, 579
BccI CCATC 2 cut(s) 86, 305
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 181, 199
BclI TGATCA 1 cut(s) 610
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 4 cut(s) 115, 155, 338, 389
BfaI CTAG 2 cut(s) 560, 775
BfuAI ACCTGC 1 cut(s) 557
BisI GCNGC 4 cut(s) 258, 307, 590, 593
BlpI GCTNAGC 1 cut(s) 278
BlsI GCNGC 4 cut(s) 259, 308, 591, 594
Bme1390I CCNGG 3 cut(s) 175, 181, 199
Bme18I GGWCC 3 cut(s) 177, 183, 602
BmeRI GACNNNNNGTC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 691
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 4 cut(s) 177, 183, 442, 602
BmiI GGNNCC 3 cut(s) 178, 242, 444
BmrFI CCNGG 3 cut(s) 175, 181, 199
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 438
Bpu1102I GCTNAGC 1 cut(s) 278
Bpu14I TTCGAA 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 175
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 237
Bse118I RCCGGY 2 cut(s) 230, 237
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 768
Bse8I GATNNNNATC 1 cut(s) 388
BseBI CCWGG 2 cut(s) 181, 199
BseCI ATCGAT 1 cut(s) 339
BseGI GGATG 2 cut(s) 68, 81
BseJI GATNNNNATC 1 cut(s) 388
BseLI CCNNNNNNNGG 2 cut(s) 180, 237
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 3 cut(s) 269, 429, 587
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 2 cut(s) 23, 35
BseX3I CGGCCG 1 cut(s) 258
BseXI GCAGC 2 cut(s) 576, 579
BseYI CCCAGC 1 cut(s) 454
Bsh1236I CGCG 5 cut(s) 108, 266, 287, 323, 548
Bsh1285I CGRYCG 2 cut(s) 238, 261
BshFI GGCC 3 cut(s) 5, 260, 443
BshNI GGYRCC 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 339
BsiEI CGRYCG 2 cut(s) 238, 261
BsiHKAI GWGCWC 1 cut(s) 692
BsiHKCI CYCGRG 1 cut(s) 691
BsiSI CCGG 3 cut(s) 174, 231, 238
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 180, 237
BsmAI GTCTC 4 cut(s) 115, 155, 338, 389
BsmBI CGTCTC 2 cut(s) 115, 389
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 3 cut(s) 5, 260, 443
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 5 cut(s) 389, 610, 650, 697, 737
Bsp1720I GCTNAGC 1 cut(s) 278
Bsp68I TCGCGA 2 cut(s) 266, 287
BspACI CCGC 8 cut(s) 19, 106, 114, 257, 306, 487, 520, 546
BspANI GGCC 3 cut(s) 5, 260, 443
BspCNI CTCAG 3 cut(s) 270, 430, 588
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 5 cut(s) 108, 266, 287, 323, 548
BspLI GGNNCC 3 cut(s) 178, 242, 444
BspMI ACCTGC 1 cut(s) 557
BspPI GGATC 2 cut(s) 397, 732
BspQI GCTCTTC 1 cut(s) 638
BspT104I TTCGAA 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 1 cut(s) 487
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 2 cut(s) 230, 237
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 2 cut(s) 230, 237
BssMI GATC 5 cut(s) 389, 610, 650, 697, 737
BssNI GRCGYC 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 181, 199
Bst4CI ACNGT 1 cut(s) 476
Bst6I CTCTTC 3 cut(s) 137, 638, 641
BstACI GRCGYC 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 356
BstDEI CTNAG 3 cut(s) 278, 438, 596
BstEII GGTNACC 1 cut(s) 295
BstF5I GGATG 2 cut(s) 68, 81
BstFNI CGCG 5 cut(s) 108, 266, 287, 323, 548
BstKTI GATC 5 cut(s) 392, 613, 653, 700, 740
BstMAI GTCTC 4 cut(s) 115, 155, 338, 389
BstMBI GATC 5 cut(s) 389, 610, 650, 697, 737
BstMCI CGRYCG 2 cut(s) 238, 261
BstMWI GCNNNNNNNGC 3 cut(s) 135, 263, 455
BstNI CCWGG 2 cut(s) 181, 199
BstPI GGTNACC 1 cut(s) 295
BstSCI CCNGG 3 cut(s) 173, 179, 197
BstUI CGCG 5 cut(s) 108, 266, 287, 323, 548
BstV1I GCAGC 2 cut(s) 576, 579
BstZI CGGCCG 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 3 cut(s) 5, 260, 443
BsuTUI ATCGAT 1 cut(s) 339
BtgZI GCGATG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 68, 81
BtuMI TCGCGA 2 cut(s) 266, 287
BveI ACCTGC 1 cut(s) 557
Cfr10I RCCGGY 2 cut(s) 230, 237
Cfr13I GGNCC 4 cut(s) 177, 183, 442, 602
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 4 cut(s) 97, 179, 193, 329
CsiI ACCWGGT 1 cut(s) 179
Csp6I GTAC 1 cut(s) 241
CspAI ACCGGT 1 cut(s) 237
CviAII CATG 3 cut(s) 226, 380, 683
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 278, 438, 596
DpnI GATC 5 cut(s) 391, 612, 652, 699, 739
DpnII GATC 5 cut(s) 389, 610, 650, 697, 737
DraI TTTAAA 2 cut(s) 465, 745
DriI GACNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 258
EagI CGGCCG 1 cut(s) 258
Eam1104I CTCTTC 3 cut(s) 137, 638, 641
Eam1105I GACNNNNNGTC 1 cut(s) 107
EarI CTCTTC 3 cut(s) 137, 638, 641
EciI GGCGGA 2 cut(s) 103, 535
Ecl136II GAGCTC 1 cut(s) 690
EclXI CGGCCG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 3 cut(s) 177, 183, 602
Eco52I CGGCCG 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 691
Eco91I GGTNACC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 690
EcoO109I RGGNCCY 3 cut(s) 177, 442, 602
EcoO65I GGTNACC 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 179, 197
EcoT38I GRGCYC 1 cut(s) 692
Esp3I CGTCTC 2 cut(s) 115, 389
FaeI CATG 3 cut(s) 229, 383, 686
FaiI YATR 5 cut(s) 227, 302, 381, 472, 684
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 1 cut(s) 190
FatI CATG 3 cut(s) 225, 379, 682
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 4 cut(s) 258, 307, 590, 593
FokI GGATG 2 cut(s) 55, 68
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 4 cut(s) 258, 307, 590, 593
FspBI CTAG 2 cut(s) 560, 775
GluI GCNGC 4 cut(s) 258, 307, 590, 593
GsaI CCCAGC 1 cut(s) 458
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 3 cut(s) 5, 260, 443
HapII CCGG 3 cut(s) 174, 231, 238
HgaI GACGC 4 cut(s) 97, 179, 193, 329
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 3 cut(s) 229, 383, 686
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 4 cut(s) 150, 251, 346, 384
HpaI GTTAAC 1 cut(s) 513
HpaII CCGG 3 cut(s) 174, 231, 238
HphI GGTGA 2 cut(s) 31, 307
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 7 cut(s) 121, 250, 389, 394, 534, 610, 655
Hpy188III TCNNGA 6 cut(s) 160, 217, 265, 286, 499, 693
Hpy8I GTNNAC 1 cut(s) 513
Hpy99I CGWCG 5 cut(s) 125, 161, 173, 209, 266
HpyAV CCTTC 5 cut(s) 283, 310, 566, 615, 662
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 2 cut(s) 59, 398
HpyCH4V TGCA 2 cut(s) 566, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 135, 263, 455
HpyF3I CTNAG 3 cut(s) 278, 438, 596
HpySE526I ACGT 2 cut(s) 59, 398
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 3 cut(s) 229, 383, 686
KpnI GGTACC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 610
KspAI GTTAAC 1 cut(s) 513
Kzo9I GATC 5 cut(s) 389, 610, 650, 697, 737
LguI GCTCTTC 1 cut(s) 638
LmnI GCTCC 3 cut(s) 36, 522, 687
Lsp1109I GCAGC 2 cut(s) 576, 579
LweI GCATC 1 cut(s) 419
MabI ACCWGGT 1 cut(s) 179
MaeI CTAG 2 cut(s) 560, 775
MaeII ACGT 2 cut(s) 59, 398
MaeIII GTNAC 2 cut(s) 295, 569
MalI GATC 5 cut(s) 391, 612, 652, 699, 739
MbiI CCGCTC 1 cut(s) 487
MboI GATC 5 cut(s) 389, 610, 650, 697, 737
MboII GAAGA 3 cut(s) 124, 625, 658
MfeI CAATTG 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 5 cut(s) 268, 358, 577, 678, 726
MluI ACGCGT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 2 cut(s) 144, 210
MseI TTAA 3 cut(s) 464, 512, 744
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 3 cut(s) 174, 231, 238
MspR9I CCNGG 3 cut(s) 175, 181, 199
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 2 cut(s) 181, 199
MvnI CGCG 5 cut(s) 108, 266, 287, 323, 548
MwoI GCNNNNNNNGC 3 cut(s) 135, 263, 455
NciI CCSGG 1 cut(s) 175
NdeII GATC 5 cut(s) 389, 610, 650, 697, 737
NlaIII CATG 3 cut(s) 229, 383, 686
NlaIV GGNNCC 3 cut(s) 178, 242, 444
NmuCI GTSAC 1 cut(s) 295
NruI TCGCGA 2 cut(s) 266, 287
NspV TTCGAA 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 638
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PfeI GAWTC 3 cut(s) 150, 251, 384
PflFI GACNNNGTC 1 cut(s) 181
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 4 cut(s) 259, 308, 591, 594
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PpuMI RGGWCCY 2 cut(s) 177, 602
Psp124BI GAGCTC 1 cut(s) 692
Psp5II RGGWCCY 2 cut(s) 177, 602
Psp6I CCWGG 2 cut(s) 179, 197
PspEI GGTNACC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 454
PspGI CCWGG 2 cut(s) 179, 197
PspN4I GGNNCC 3 cut(s) 178, 242, 444
PspPI GGNCC 4 cut(s) 177, 183, 442, 602
PspPPI RGGWCCY 2 cut(s) 177, 602
PsyI GACNNNGTC 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 144
RruI TCGCGA 2 cut(s) 266, 287
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 692
SapI GCTCTTC 1 cut(s) 638
SaqAI TTAA 3 cut(s) 464, 512, 744
SatI GCNGC 4 cut(s) 258, 307, 590, 593
Sau3AI GATC 5 cut(s) 389, 610, 650, 697, 737
Sau96I GGNCC 4 cut(s) 177, 183, 442, 602
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 3 cut(s) 175, 181, 199
SduI GDGCHC 1 cut(s) 692
SexAI ACCWGGT 1 cut(s) 179
SfaNI GCATC 1 cut(s) 419
SfuI TTCGAA 1 cut(s) 356
SinI GGWCC 3 cut(s) 177, 183, 602
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 5 cut(s) 268, 358, 577, 678, 726
SsiI CCGC 8 cut(s) 19, 106, 114, 257, 306, 487, 520, 546
SspMI CTAG 2 cut(s) 560, 775
SstI GAGCTC 1 cut(s) 692
StyD4I CCNGG 3 cut(s) 173, 179, 197
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 2 cut(s) 62, 401
TaqI TCGA 7 cut(s) 159, 333, 339, 356, 402, 417, 676
TasI AATT 5 cut(s) 268, 358, 577, 678, 726
TauI GCSGC 2 cut(s) 260, 309
TfiI GAWTC 3 cut(s) 150, 251, 384
Tru1I TTAA 3 cut(s) 464, 512, 744
Tru9I TTAA 3 cut(s) 464, 512, 744
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 589, 592
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 420, 671, 681
TspGWI ACGGA 2 cut(s) 145, 183
Tth111I GACNNNGTC 1 cut(s) 181
VpaK11BI GGWCC 3 cut(s) 177, 183, 602
XapI RAATTY 3 cut(s) 268, 358, 678
XspI CTAG 2 cut(s) 560, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.