Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007454

Physical Location & Seq

Genomic Coordinates Reverse (-)

12607104 .. 12611102

Gene Structure 3999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTGCGGATCCAAGCAGTGTCCCGGTTGTGGACACAAGCTCGAAGGAAAGCCGGACTGGTTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGACCAAGAACTAATTGAACACCTTGAAGCAAAGGTAGAAGCCAAAGACTCCAAATCTCACCCTTTGATTGATGAATTCATCCCTACAATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAAAAACTTCCAGGAGTCACAAGAGATGGGTTGAGCAGGCACTTCTTCCATAGGCCATCAAAAGCCTACACAACTGGGACAAGAAAGAGAAGAAAAATCCAAACAGAATGTGACTTGCAAGGAGGGGAAACAAGGTGGCACAAGACAGGCAAGACCAGGCCAGTCATGGTGAACGGAAAACAAAAAGGCTGCAAGAAAATTCTAGTCCTCTACACTAACTTTGGGAAAAACCGAAAACCTGAAAAAACGAATTGGGTGATGCACCAATACCATCTTGGGCAGCATGAGGAGGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACTCAGCCAAGGCAATGCAACTGGTCTGATAGAGCTAGTGCGACAACTGGAGAAGGAAGCAGTGATATTATGGCTACTAATAGCAGAAGAGATAGTGGGAGTGGGAGTTGTTCTTCTAAGGAAATATTACCTTCTCATCCTCATAGAGATCATGATCAAATGGCGGCAACAGCAATAGCTGCGGTTGCTGCTGCTGCTCCAATTTCAAGCTACAGTGGCATTGACATTCATCAGTTGAAATCAGACCACTTCAGCTTTGGCCCCTTCAGAAAAAGCTTTGATGAGGTGGGGATAGGAGGAGAGGCGTCAACGGTAAGGGAAAGACCAGAAACTGGCACGTGCGAAGAGATACAAGAGCAGCACCAGAGATCAGTAGCAGTACAGCGTCATCATCATCATCATCATATGGGCCATGAACTAGTACCTGATCATCAGCAGCAGCATCAACATGAACATCAACAACAGCAGCAGCAGCAACTGCACCATCATCAACAAATTGCAACAGCTACAGCTTTCCACATCAATCGCCCTTCACATCCCATTTCCACCATCATCTCTCCATCTCCTCTCCACCACACCTCCATCATTCTTGATCAGGACTCCTACTCCCGGTTGATACTTCAAAACGAAAATTTCCAGGCACAGCAACAACAGCAGCAGCATCAACAGCAGCAACACCACAACCAACAACAGCATCATAAAATGGGAGATAGGTCTGCATCTGGTTTGGAGGAACTAATAATGGGCTGCACTTCCAGCAGTAGTAATATCAAAGAAGAGTCATCCATGCCAAACCCTCAAGAGGCAGAGTGGATGAAGTACTCTTCCTTCTGGCCTGACCCTGACAACCCAGATCATCATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

473

Amino Acids

53.47

Weight (kDa)

6.59

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	24 - 165	5.2e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29230 AT4G29230 AT4G29230
fragaria_vesca	FvH4_1g06530 FvH4_1g06530
malus_domestica	MD02G1068700.v1.1 MD15G1200200.v1.1
prunus_persica	Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1 Prupe.7G217000_v2.0.a1
pyrus_communis	pycom02g05440 pycom15g17790
rosa_chinensis	RchiOBHm_Chr2g0092281
rosa_laevigata	RLG00000016293
rosa_multiflora	Rmu_sc0003289.1_g000022
rosa_roxburghii	Rroxscaffold_2G00149300
rosa_rugosa	Rorug02G0024400 Rorug02G0024500 Rorug02G0024600 Rorug02G0024600
rosa_samantha	Rh2AG070300 Rh2BG069800 Rh2CG071000 Rh2DG068800
rosa_wichuraiana	Rw2G006200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	67
AciI	CCGC	3 cut(s)	6, 716, 734
AclWI	GGATC	3 cut(s)	3, 16, 83
AcsI	RAATTY	4 cut(s)	83, 170, 417, 1183
AcuI	CTGAAG	2 cut(s)	787, 802
AcvI	CACGTG	1 cut(s)	891
AcyI	GRCGYC	1 cut(s)	857
AfaI	GTAC	3 cut(s)	933, 975, 1373
AfiI	CCNNNNNNNGG	4 cut(s)	29, 884, 1161, 1354
AgsI	TTSAA	6 cut(s)	113, 122, 188, 759, 790, 1175
AhlI	ACTAGT	1 cut(s)	970
AjnI	CCWGG	3 cut(s)	229, 374, 1188
AluBI	AGCT	9 cut(s)	40, 526, 587, 731, 762, 807, 828, 1058, 1064
AluI	AGCT	9 cut(s)	40, 526, 587, 731, 762, 807, 828, 1058, 1064
AlwI	GGATC	3 cut(s)	3, 16, 83
AlwNI	CAGNNNCTG	2 cut(s)	884, 1030
AoxI	GGCC	5 cut(s)	272, 377, 811, 961, 1385
ApoI	RAATTY	4 cut(s)	83, 170, 417, 1183
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	812, 961
AsuC2I	CCSGG	2 cut(s)	24, 1162
AsuHPI	GGTGA	3 cut(s)	146, 400, 487
BamHI	GGATCC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	1364, 1396
BbrPI	CACGTG	1 cut(s)	891
BccI	CCATC	9 cut(s)	191, 222, 239, 283, 498, 1044, 1109, 1120, 1142
BciT130I	CCWGG	3 cut(s)	231, 376, 1190
BclI	TGATCA	3 cut(s)	706, 979, 1144
BcnI	CCSGG	2 cut(s)	24, 1162
BcuI	ACTAGT	1 cut(s)	970
BfaI	CTAG	3 cut(s)	422, 588, 971
BfmI	CTRYAG	2 cut(s)	763, 1059
BmcAI	AGTACT	1 cut(s)	1373
Bme1390I	CCNGG	5 cut(s)	24, 231, 376, 1162, 1190
BmgT120I	GGNCC	2 cut(s)	812, 961
BmiI	GGNNCC	2 cut(s)	10, 814
BmrFI	CCNGG	5 cut(s)	24, 231, 376, 1162, 1190
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	5 cut(s)	468, 1003, 1222, 1255, 1280
BmuI	ACTGGG	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	1335
BpuMI	CCSGG	2 cut(s)	24, 1162
BsaAI	YACGTR	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	560
BsaXI	ACNNNNNCTCC	8 cut(s)	513, 543, 643, 673, 1115, 1142, 1145, 1172
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 884, 1161, 1354
Bse1I	ACTGG	6 cut(s)	62, 298, 380, 578, 604, 889
Bse3DI	GCAATG	1 cut(s)	572
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	231, 376, 1190
BseDI	CCNNGG	1 cut(s)	560
BseGI	GGATG	6 cut(s)	174, 214, 688, 1087, 1334, 1371
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	29, 884, 1161, 1354
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	6 cut(s)	62, 298, 380, 578, 604, 889
BseRI	GAGGAG	4 cut(s)	521, 524, 864, 1107
BsgI	GTGCAG	2 cut(s)	1016, 1285
BshFI	GGCC	5 cut(s)	274, 379, 813, 963, 1387
BsiSI	CCGG	3 cut(s)	24, 53, 1162
BslFI	GGGAC	2 cut(s)	6, 310
BslI	CCNNNNNNNGG	4 cut(s)	29, 884, 1161, 1354
BsmFI	GGGAC	2 cut(s)	6, 310
BsnI	GGCC	5 cut(s)	274, 379, 813, 963, 1387
Bsp143I	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
BspACI	CCGC	3 cut(s)	6, 716, 734
BspANI	GGCC	5 cut(s)	274, 379, 813, 963, 1387
BspCNI	CTCAG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	10, 814
BspPI	GGATC	3 cut(s)	3, 16, 83
BsrDI	GCAATG	1 cut(s)	572
BsrI	ACTGG	6 cut(s)	62, 298, 380, 578, 604, 889
BssECI	CCNNGG	1 cut(s)	560
BssMI	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
BssNI	GRCGYC	1 cut(s)	857
BssT1I	CCWWGG	1 cut(s)	560
Bst2UI	CCWGG	3 cut(s)	231, 376, 1190
Bst4CI	ACNGT	2 cut(s)	767, 865
Bst6I	CTCTTC	4 cut(s)	634, 891, 1323, 1381
BstACI	GRCGYC	1 cut(s)	857
BstAPI	GCANNNNNTGC	2 cut(s)	731, 1030
BstBAI	YACGTR	1 cut(s)	891
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	555, 669
BstF5I	GGATG	6 cut(s)	174, 214, 688, 1087, 1334, 1371
BstKTI	GATC	8 cut(s)	11, 91, 703, 709, 923, 982, 1147, 1408
BstMBI	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
BstNI	CCWGG	3 cut(s)	231, 376, 1190
BstSCI	CCNGG	5 cut(s)	22, 229, 374, 1160, 1188
BstSFI	CTRYAG	2 cut(s)	763, 1059
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	5 cut(s)	274, 379, 813, 963, 1387
BtsCI	GGATG	6 cut(s)	174, 214, 688, 1087, 1334, 1371
BtsI	GCAGTG	2 cut(s)	23, 619
BtsIMutI	CAGTG	3 cut(s)	23, 619, 772
Cac8I	GCNNGC	1 cut(s)	257
CaiI	CAGNNNCTG	2 cut(s)	884, 1030
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	812, 961
CseI	GACGC	2 cut(s)	846, 926
Csp6I	GTAC	3 cut(s)	932, 974, 1372
CviAII	CATG	7 cut(s)	385, 503, 704, 965, 1001, 1339, 1412
CviQI	GTAC	3 cut(s)	932, 974, 1372
DdeI	CTNAG	2 cut(s)	555, 669
DpnI	GATC	8 cut(s)	10, 90, 702, 708, 922, 981, 1146, 1407
DpnII	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
Eam1104I	CTCTTC	4 cut(s)	634, 891, 1323, 1381
EarI	CTCTTC	4 cut(s)	634, 891, 1323, 1381
Eco130I	CCWWGG	1 cut(s)	560
Eco57I	CTGAAG	2 cut(s)	787, 802
Eco72I	CACGTG	1 cut(s)	891
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	3 cut(s)	229, 374, 1188
EcoT14I	CCWWGG	1 cut(s)	560
ErhI	CCWWGG	1 cut(s)	560
FaeI	CATG	7 cut(s)	388, 506, 707, 968, 1004, 1342, 1415
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	2 cut(s)	6, 310
FatI	CATG	7 cut(s)	384, 502, 703, 964, 1000, 1338, 1411
FauNDI	CATATG	1 cut(s)	957
FbaI	TGATCA	3 cut(s)	706, 979, 1144
FblI	GTMKAC	1 cut(s)	67
FokI	GGATG	6 cut(s)	161, 201, 675, 1074, 1321, 1378
FspBI	CTAG	3 cut(s)	422, 588, 971
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	5 cut(s)	274, 379, 813, 963, 1387
HapII	CCGG	3 cut(s)	24, 53, 1162
HgaI	GACGC	2 cut(s)	846, 926
Hin1I	GRCGYC	1 cut(s)	857
Hin1II	CATG	7 cut(s)	388, 506, 707, 968, 1004, 1342, 1415
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HindIII	AAGCTT	1 cut(s)	826
HinfI	GANTC	5 cut(s)	143, 234, 553, 1151, 1331
HpaII	CCGG	3 cut(s)	24, 53, 1162
HphI	GGTGA	3 cut(s)	146, 400, 487
Hpy166II	GTNNAC	4 cut(s)	32, 68, 391, 861
Hpy188I	TCNGA	4 cut(s)	552, 580, 796, 821
Hpy188III	TCNNGA	5 cut(s)	218, 704, 1142, 1148, 1352
Hpy8I	GTNNAC	4 cut(s)	32, 68, 391, 861
HpyAV	CCTTC	8 cut(s)	38, 182, 512, 599, 693, 826, 1092, 1390
HpyCH4III	ACNGT	2 cut(s)	767, 865
HpyCH4IV	ACGT	1 cut(s)	890
HpyCH4V	TGCA	8 cut(s)	337, 411, 481, 570, 1033, 1052, 1271, 1302
HpyF3I	CTNAG	2 cut(s)	555, 669
HpySE526I	ACGT	1 cut(s)	890
Hsp92I	GRCGYC	1 cut(s)	857
Hsp92II	CATG	7 cut(s)	388, 506, 707, 968, 1004, 1342, 1415
Ksp22I	TGATCA	3 cut(s)	706, 979, 1144
Kzo9I	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
LmnI	GCTCC	1 cut(s)	754
LweI	GCATC	5 cut(s)	468, 1003, 1222, 1255, 1280
MaeI	CTAG	3 cut(s)	422, 588, 971
MaeII	ACGT	1 cut(s)	890
MaeIII	GTNAC	3 cut(s)	206, 235, 329
MalI	GATC	8 cut(s)	10, 90, 702, 708, 922, 981, 1146, 1407
MboI	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
MboII	GAAGA	8 cut(s)	206, 256, 321, 651, 657, 908, 1340, 1368
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	8
MluCI	AATT	9 cut(s)	83, 108, 170, 183, 417, 469, 753, 1047, 1183
MlyI	GAGTC	5 cut(s)	137, 243, 547, 1145, 1340
MmeI	TCCRAC	1 cut(s)	116
MroXI	GAANNNNTTC	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	999
MspI	CCGG	3 cut(s)	24, 53, 1162
MspR9I	CCNGG	5 cut(s)	24, 231, 376, 1162, 1190
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	3 cut(s)	231, 376, 1190
NciI	CCSGG	2 cut(s)	24, 1162
NdeI	CATATG	1 cut(s)	957
NdeII	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
NlaIII	CATG	7 cut(s)	388, 506, 707, 968, 1004, 1342, 1415
NlaIV	GGNNCC	2 cut(s)	10, 814
NmuCI	GTSAC	2 cut(s)	235, 329
PagI	TCATGA	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	884
PfoI	TCCNGGA	1 cut(s)	229
PleI	GAGTC	5 cut(s)	137, 242, 547, 1145, 1339
PmaCI	CACGTG	1 cut(s)	891
PmlI	CACGTG	1 cut(s)	891
PpsI	GAGTC	5 cut(s)	137, 242, 547, 1145, 1339
Ppu21I	YACGTR	1 cut(s)	891
Psp6I	CCWGG	3 cut(s)	229, 374, 1188
PspCI	CACGTG	1 cut(s)	891
PspGI	CCWGG	3 cut(s)	229, 374, 1188
PspN4I	GGNNCC	2 cut(s)	10, 814
PspPI	GGNCC	2 cut(s)	812, 961
PstNI	CAGNNNCTG	2 cut(s)	884, 1030
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	3 cut(s)	933, 975, 1373
RsaNI	GTAC	3 cut(s)	932, 974, 1372
RseI	CAYNNNNRTG	1 cut(s)	999
Sau3AI	GATC	8 cut(s)	8, 88, 700, 706, 920, 979, 1144, 1405
Sau96I	GGNCC	2 cut(s)	812, 961
ScaI	AGTACT	1 cut(s)	1373
SchI	GAGTC	5 cut(s)	137, 243, 547, 1145, 1340
ScrFI	CCNGG	5 cut(s)	24, 231, 376, 1162, 1190
SfaNI	GCATC	5 cut(s)	468, 1003, 1222, 1255, 1280
SfcI	CTRYAG	2 cut(s)	763, 1059
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	1 cut(s)	1350
SmoI	CTYRAG	1 cut(s)	1350
SpeI	ACTAGT	1 cut(s)	970
Sse9I	AATT	9 cut(s)	83, 108, 170, 183, 417, 469, 753, 1047, 1183
SsiI	CCGC	3 cut(s)	6, 716, 734
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	3 cut(s)	422, 588, 971
StyD4I	CCNGG	5 cut(s)	22, 229, 374, 1160, 1188
StyI	CCWWGG	1 cut(s)	560
TaaI	ACNGT	2 cut(s)	767, 865
TaiI	ACGT	1 cut(s)	893
TaqI	TCGA	1 cut(s)	42
TasI	AATT	9 cut(s)	83, 108, 170, 183, 417, 469, 753, 1047, 1183
TatI	WGTACW	2 cut(s)	931, 1371
TauI	GCSGC	1 cut(s)	719
TscAI	CASTG	3 cut(s)	23, 619, 772
TseFI	GTSAC	2 cut(s)	235, 329
Tsp45I	GTSAC	2 cut(s)	235, 329
TspDTI	ATGAA	6 cut(s)	163, 183, 770, 981, 1017, 1382
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	3 cut(s)	23, 619, 772
Van91I	CCANNNNNTGG	1 cut(s)	884
XapI	RAATTY	4 cut(s)	83, 170, 417, 1183
XcmI	CCANNNNNNNNNTGG	3 cut(s)	382, 491, 806
XmiI	GTMKAC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	3 cut(s)	422, 588, 971
ZrmI	AGTACT	1 cut(s)	1373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.