Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009979

Physical Location & Seq

Genomic Coordinates Reverse (-)

12929363 .. 12931038

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGACTTGGTGTGCTTCTTGCCGTGCATTGTTTCCTAAGATGTCAAATGTGCCCAAGGAAGCAGTGGCATGTCTTGTTGGATAAACCGGGACTAATTTCGCTCTGCAGAACAGCTGAAGACCACCCTGAGATTTTATTCCTGAAAGTGAACTTCGACGAGAACAAACCAATGTGCAAAAGTATGAATGTGAAGGTGCTTCCCTATTTCCACTTCTATCGTGGATCTGAGGGACAGCTTGAATCTTTTTCATGTTCACTTGCTAAGTTACAGAAGTTAAAGGATGCTATTGCTTTACACAACACAGATCGTTGCAGCATTGGCCCTCCGAAGGGAGTTGGATCGATCTTATACCGGAACCATCCTCAGCTCCGAAGACAAACCCTTAGAATCTGCCTCATCATAGAACTTCTTCGACTCAAGCAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

144

Amino Acids

16.44

Weight (kDa)

9.45

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26160 AT4G29670 AT4G29670
fragaria_vesca	FvH4_1g07270 FvH4_2g02730
malus_domestica	MD02G1077400.v1.1 MD15G1205800.v1.1 MD15G1205900.v1.1
prunus_persica	Prupe.7G211300_v2.0.a1
pyrus_communis	pycom15g18250
rosa_chinensis	RchiOBHm_Chr2g0093171
rosa_laevigata	RLG00000016374
rosa_multiflora	Rmu_sc0003724.1_g000006 Rmu_sc0038852.1_g000002
rosa_roxburghii	Rroxscaffold_2G00148450
rosa_rugosa	Rorug02G0033400
rosa_samantha	Rh2AG079100 Rh2BG080400 Rh2CG082600 Rh2DG078100
rosa_wichuraiana	Rw2G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	232, 349
AcuI	CTGAAG	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	331, 332
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	3 cut(s)	116, 238, 370
AluI	AGCT	3 cut(s)	116, 238, 370
AlwI	GGATC	2 cut(s)	232, 349
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	56
BbsI	GAAGAC	2 cut(s)	126, 382
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	1 cut(s)	8
BcnI	CCSGG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	2 cut(s)	126, 382
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	90
Bsa29I	ATCGAT	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 332
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	289, 361
BseLI	CCNNNNNNNGG	2 cut(s)	331, 332
BseMII	CTCAG	3 cut(s)	120, 219, 380
BseSI	GKGCMC	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	327
BshFI	GGCC	1 cut(s)	324
BshVI	ATCGAT	1 cut(s)	344
BsiSI	CCGG	2 cut(s)	89, 355
BslFI	GGGAC	3 cut(s)	18, 105, 246
BslI	CCNNNNNNNGG	2 cut(s)	331, 332
BsmFI	GGGAC	3 cut(s)	18, 105, 246
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	224, 307, 341, 345
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	3 cut(s)	121, 220, 379
BspDI	ATCGAT	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	359
BspMAI	CTGCAG	1 cut(s)	110
BspPI	GGATC	2 cut(s)	232, 349
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	4 cut(s)	224, 307, 341, 345
BssT1I	CCWWGG	1 cut(s)	56
BstDEI	CTNAG	6 cut(s)	38, 129, 228, 264, 366, 386
BstF5I	GGATG	2 cut(s)	289, 361
BstKTI	GATC	4 cut(s)	227, 310, 344, 348
BstMBI	GATC	4 cut(s)	224, 307, 341, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	327
BstV2I	GAAGAC	2 cut(s)	126, 382
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
Bsu15I	ATCGAT	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	289, 361
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	344
CviAII	CATG	2 cut(s)	71, 252
CviJI	RGCY	4 cut(s)	116, 238, 324, 370
CviKI_1	RGCY	4 cut(s)	116, 238, 324, 370
DdeI	CTNAG	6 cut(s)	38, 129, 228, 264, 366, 386
DpnI	GATC	4 cut(s)	226, 309, 343, 347
DpnII	GATC	4 cut(s)	224, 307, 341, 345
Eco130I	CCWWGG	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	2 cut(s)	74, 255
FaiI	YATR	5 cut(s)	72, 185, 253, 352, 404
FaqI	GGGAC	3 cut(s)	18, 105, 246
FatI	CATG	2 cut(s)	70, 251
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	2 cut(s)	296, 348
Fsp4HI	GCNGC	1 cut(s)	316
GluI	GCNGC	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	2 cut(s)	89, 355
Hin1II	CATG	2 cut(s)	74, 255
HinfI	GANTC	3 cut(s)	242, 390, 417
HpaII	CCGG	2 cut(s)	89, 355
Hpy166II	GTNNAC	2 cut(s)	151, 257
Hpy188I	TCNGA	3 cut(s)	229, 330, 374
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	151, 257
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	187, 325
HpyCH4V	TGCA	4 cut(s)	28, 108, 177, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	6 cut(s)	38, 129, 228, 264, 366, 386
Hsp92II	CATG	2 cut(s)	74, 255
Kzo9I	GATC	4 cut(s)	224, 307, 341, 345
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	4 cut(s)	102, 141, 155, 368
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	4 cut(s)	226, 309, 343, 347
MboI	GATC	4 cut(s)	224, 307, 341, 345
MboII	GAAGA	3 cut(s)	131, 387, 404
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	2 cut(s)	96, 425
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	2 cut(s)	60, 319
MnlI	CCTC	4 cut(s)	223, 336, 375, 407
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	89, 355
MspR9I	CCNGG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	321
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	4 cut(s)	224, 307, 341, 345
NlaIII	CATG	2 cut(s)	74, 255
NlaIV	GGNNCC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	242, 390
PkrI	GCNGC	1 cut(s)	317
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	4 cut(s)	224, 307, 341, 345
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	4 cut(s)	118, 198, 240, 372
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	2 cut(s)	96, 425
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	56
TaqI	TCGA	3 cut(s)	156, 344, 415
TasI	AATT	2 cut(s)	96, 425
TfiI	GAWTC	2 cut(s)	242, 390
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	1 cut(s)	315
TspDTI	ATGAA	2 cut(s)	200, 240
TspRI	CASTG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	2 cut(s)	63, 218
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.