Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009096

Physical Location & Seq

Genomic Coordinates Reverse (-)

13177398 .. 13180562

Gene Structure 3165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCGAGGCTTCTCCGAAACGGTTTTTCTATGAAACGTTTCCTATTCCCGCCACAGGTGAATCAGAGAGGAATATTAGGGACATCTACTCAGTTTTGCAATTTTTCTTCTAAAGGTAGAAAGAAATCTAAGTCGGATGGAAGTGACTCCTGTGATGAGAATTTGTCGAAGAAGGAGTTAGCCCTGAAGCAAGCTCTTGATCGAATTACATCCTCATTTGGAAAGGGATCTATAATGTGGCTTGGTCGGTCTGTCTCTCCTAGACAAGTCCCAGTGGTATCTACGGGTTCTTTTTCTTTGGACATAGCACTGGGAATTGGTGGATTTCCGAAGGGACGTGTTGTGGAGATATACGGTCCTGAGGCTTCTGGGAAAACTACTCTGGCTCTTCATGTAATAGCCGAATCACAGAAGCAAGGAGGGACATGTGTTTTTGTTGACGCTGAGCATGCTCTTGATCCTACACTGGCTCAGTCTATTGGGGTAAACACTGAGAATCTGCTTCTATCACAACCTGATTGTGGTGAGCAAGCTCTCAGTCTTGTAGACACTCTAATCCGGAGTGGTTCAGTTGATGTTGTTGTTATTGACAGTGTGGCCGCACTTGTGCCTAAAGGTGAACTTGATGGCGAGATGGGTGATGCTCATATGGCAATGCAGGCTAGACTAATGAGCCAGGCACTTCGCAAATTGAGTCACTCTTTATCTCTATCACAGACAATATTAATCTTTACAAATCAGGTGAGGGCAAAGCTTTCTACTTTTGGAGGATTTGGTGGGCCAACTGAAGTTACTTGTGGCGGCAATGCTTTGAAGTTTTATGCTTCAGTGCGCCTTAATATGAGGAGAATAGGACTTGTAAAGAAGGGTGAAGAGACTTTAGGAAGTCAAGTTCAAGTGAAGATAGTGAAGAACAAACTTGCCCCTCCATTTAGAACTGTTCAGATAGAGCTTGAGTTTGGTAAGGGTATATGTCGGGAATCCGATCGATCATTGATTTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000150 GO:0000217 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0033554 GO:0034622 GO:0034641 GO:0042148 GO:0042623 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0045003 GO:0046483 GO:0050896 GO:0051716 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

RecA

Protein Analysis

336

Amino Acids

36.09

Weight (kDa)

9.39

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	61 - 325	5.9e-118	RecA N-terminal domain
Rad51	PF08423	90 - 283	1.6e-10	Rad51
ATPase	PF06745	94 - 151	4.2e-07	KaiC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19490
fragaria_vesca	FvH4_1g07730 FvH4_1g07730 FvH4_1g07730
malus_domestica	MD02G1081700.v1.1 MD15G1209000.v1.1
prunus_persica	Prupe.7G207400_v2.0.a1 Prupe.7G207400_v2.0.a1
pyrus_communis	pycom02g06450 pycom15g18530
rosa_chinensis	RchiOBHm_Chr2g0093621
rosa_laevigata	RLG00000016421
rosa_multiflora	Rmu_sc0002126.1_g000020
rosa_roxburghii	Rroxscaffold_2G00147950
rosa_rugosa	Rorug02G0037900 Rorug02G0037900 Rorug02G0038000
rosa_samantha	Rh2AG084500 Rh2BG085100 Rh2CG087400 Rh2DG083100
rosa_wichuraiana	Rw2G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	546
AccIII	TCCGGA	1 cut(s)	558
AciI	CCGC	3 cut(s)	50, 600, 801
AclI	AACGTT	1 cut(s)	37
AclWI	GGATC	2 cut(s)	235, 452
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	3 cut(s)	206, 807, 810
AfiI	CCNNNNNNNGG	2 cut(s)	55, 521
AflIII	ACRYGT	2 cut(s)	337, 425
AgsI	TTSAA	2 cut(s)	814, 896
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	675
AloI	GAACNNNNNNTCC	2 cut(s)	876, 908
AluBI	AGCT	4 cut(s)	194, 533, 754, 952
AluI	AGCT	4 cut(s)	194, 533, 754, 952
Alw26I	GTCTC	2 cut(s)	259, 869
AlwI	GGATC	2 cut(s)	235, 452
Aor13HI	TCCGGA	1 cut(s)	558
AoxI	GGCC	2 cut(s)	597, 779
ApoI	RAATTY	1 cut(s)	160
AseI	ATTAAT	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	2 cut(s)	356, 779
AsuHPI	GGTGA	6 cut(s)	70, 536, 629, 650, 754, 881
AvaII	GGWCC	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	360
BccI	CCATC	3 cut(s)	131, 620, 628
BciT130I	CCWGG	1 cut(s)	677
BcoDI	GTCTC	2 cut(s)	259, 869
BfaI	CTAG	2 cut(s)	261, 663
BisI	GCNGC	2 cut(s)	600, 802
BlpI	GCTNAGC	1 cut(s)	444
BlsI	GCNGC	2 cut(s)	601, 803
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	356, 779
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	2 cut(s)	266, 320
BmsI	GCATC	1 cut(s)	631
BmuI	ACTGGG	2 cut(s)	266, 320
Bpu1102I	GCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	974
Bsa29I	ATCGAT	1 cut(s)	988
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 521
Bse1I	ACTGG	3 cut(s)	272, 315, 471
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	660, 811
BseAI	TCCGGA	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	677
BseCI	ATCGAT	1 cut(s)	988
BseGI	GGATG	2 cut(s)	142, 209
BseLI	CCNNNNNNNGG	2 cut(s)	55, 521
BseMI	GCAATG	2 cut(s)	660, 811
BseMII	CTCAG	6 cut(s)	104, 351, 435, 483, 485, 550
BseNI	ACTGG	3 cut(s)	272, 315, 471
BseRI	GAGGAG	1 cut(s)	859
Bsh1285I	CGRYCG	1 cut(s)	988
BshFI	GGCC	2 cut(s)	599, 781
BshVI	ATCGAT	1 cut(s)	988
BsiEI	CGRYCG	1 cut(s)	988
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	4 cut(s)	94, 254, 348, 436
BslI	CCNNNNNNNGG	2 cut(s)	55, 521
BsmAI	GTCTC	2 cut(s)	259, 869
BsmFI	GGGAC	4 cut(s)	94, 254, 348, 436
BsnI	GGCC	2 cut(s)	599, 781
Bsp13I	TCCGGA	1 cut(s)	558
Bsp143I	GATC	5 cut(s)	199, 227, 457, 985, 989
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	3 cut(s)	50, 600, 801
BspANI	GGCC	2 cut(s)	599, 781
BspCNI	CTCAG	6 cut(s)	103, 352, 436, 484, 484, 549
BspDI	ATCGAT	1 cut(s)	988
BspEI	TCCGGA	1 cut(s)	558
BspPI	GGATC	2 cut(s)	235, 452
BspQI	GCTCTTC	1 cut(s)	393
BsrDI	GCAATG	2 cut(s)	660, 811
BsrI	ACTGG	3 cut(s)	272, 315, 471
BssMI	GATC	5 cut(s)	199, 227, 457, 985, 989
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	4 cut(s)	23, 356, 593, 940
Bst6I	CTCTTC	2 cut(s)	393, 867
BstC8I	GCNNGC	4 cut(s)	192, 450, 531, 660
BstDEI	CTNAG	7 cut(s)	90, 129, 360, 444, 471, 492, 536
BstF5I	GGATG	2 cut(s)	142, 209
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	5 cut(s)	202, 230, 460, 988, 992
BstMAI	GTCTC	2 cut(s)	259, 869
BstMBI	GATC	5 cut(s)	199, 227, 457, 985, 989
BstMCI	CGRYCG	1 cut(s)	988
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 650, 659
BstNI	CCWGG	1 cut(s)	677
BstNSI	RCATGY	2 cut(s)	429, 452
BstSCI	CCNGG	1 cut(s)	675
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
Bsu15I	ATCGAT	1 cut(s)	988
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	599, 781
BsuTUI	ATCGAT	1 cut(s)	988
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	142, 209
BtsIMutI	CAGTG	6 cut(s)	279, 308, 464, 489, 598, 834
Cac8I	GCNNGC	4 cut(s)	192, 450, 531, 660
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	2 cut(s)	356, 779
ClaI	ATCGAT	1 cut(s)	988
CseI	GACGC	1 cut(s)	449
CviAII	CATG	3 cut(s)	392, 426, 449
DdeI	CTNAG	7 cut(s)	90, 129, 360, 444, 471, 492, 536
DpnI	GATC	5 cut(s)	201, 229, 459, 987, 991
DpnII	GATC	5 cut(s)	199, 227, 457, 985, 989
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	2 cut(s)	393, 867
EarI	CTCTTC	2 cut(s)	393, 867
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	3 cut(s)	206, 807, 810
Eco81I	CCTNAGG	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	675
FaeI	CATG	3 cut(s)	395, 429, 452
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	4 cut(s)	94, 254, 348, 436
FatI	CATG	3 cut(s)	391, 425, 448
FauI	CCCGC	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	600, 802
FokI	GGATG	2 cut(s)	149, 196
Fsp4HI	GCNGC	2 cut(s)	600, 802
FspBI	CTAG	2 cut(s)	261, 663
GlaI	GCGC	1 cut(s)	833
GluI	GCNGC	2 cut(s)	600, 802
HaeIII	GGCC	2 cut(s)	599, 781
HapII	CCGG	1 cut(s)	559
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	834
Hin1II	CATG	3 cut(s)	395, 429, 452
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	752
HinfI	GANTC	6 cut(s)	61, 146, 404, 496, 694, 980
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	6 cut(s)	70, 536, 629, 650, 754, 881
Hpy166II	GTNNAC	4 cut(s)	439, 487, 547, 620
Hpy188I	TCNGA	6 cut(s)	17, 66, 136, 330, 945, 985
Hpy188III	TCNNGA	5 cut(s)	197, 359, 455, 559, 977
Hpy8I	GTNNAC	4 cut(s)	439, 487, 547, 620
HpyAV	CCTTC	3 cut(s)	166, 325, 859
HpyCH4III	ACNGT	4 cut(s)	23, 356, 593, 940
HpyCH4IV	ACGT	2 cut(s)	37, 337
HpyCH4V	TGCA	2 cut(s)	99, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 650, 659
HpyF3I	CTNAG	7 cut(s)	90, 129, 360, 444, 471, 492, 536
HpySE526I	ACGT	2 cut(s)	37, 337
Hsp92II	CATG	3 cut(s)	395, 429, 452
HspAI	GCGC	1 cut(s)	832
Kpn2I	TCCGGA	1 cut(s)	558
Kzo9I	GATC	5 cut(s)	199, 227, 457, 985, 989
LguI	GCTCTTC	1 cut(s)	393
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	2 cut(s)	261, 663
MaeII	ACGT	2 cut(s)	37, 337
MaeIII	GTNAC	3 cut(s)	143, 695, 790
MalI	GATC	5 cut(s)	201, 229, 459, 987, 991
MboI	GATC	5 cut(s)	199, 227, 457, 985, 989
MboII	GAAGA	6 cut(s)	99, 181, 380, 884, 913, 922
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	5 cut(s)	100, 160, 204, 315, 689
MlyI	GAGTC	2 cut(s)	140, 703
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	8 cut(s)	62, 223, 355, 413, 738, 761, 837, 936
MroI	TCCGGA	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	38
MseI	TTAA	2 cut(s)	725, 837
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	3 cut(s)	449, 650, 659
NdeI	CATATG	1 cut(s)	648
NdeII	GATC	5 cut(s)	199, 227, 457, 985, 989
NlaIII	CATG	3 cut(s)	395, 429, 452
NmuCI	GTSAC	2 cut(s)	143, 695
NspI	RCATGY	2 cut(s)	429, 452
PaeI	GCATGC	1 cut(s)	452
PciI	ACATGT	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	38
PfeI	GAWTC	4 cut(s)	61, 404, 496, 980
PkrI	GCNGC	2 cut(s)	601, 803
Ple19I	CGATCG	1 cut(s)	988
PleI	GAGTC	2 cut(s)	140, 702
PpsI	GAGTC	2 cut(s)	140, 702
PscI	ACATGT	1 cut(s)	425
PshBI	ATTAAT	1 cut(s)	725
Psp1406I	AACGTT	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	356, 779
PsuI	RGATCY	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	988
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	2 cut(s)	725, 837
SatI	GCNGC	2 cut(s)	600, 802
Sau3AI	GATC	5 cut(s)	199, 227, 457, 985, 989
Sau96I	GGNCC	2 cut(s)	356, 779
SchI	GAGTC	2 cut(s)	140, 703
ScrFI	CCNGG	1 cut(s)	677
SfaNI	GCATC	1 cut(s)	631
SinI	GGWCC	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	953
SmoI	CTYRAG	1 cut(s)	953
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	5 cut(s)	100, 160, 204, 315, 689
SsiI	CCGC	3 cut(s)	50, 600, 801
SspI	AATATT	2 cut(s)	75, 723
SspMI	CTAG	2 cut(s)	261, 663
StyD4I	CCNGG	1 cut(s)	675
TaaI	ACNGT	4 cut(s)	23, 356, 593, 940
TaiI	ACGT	2 cut(s)	40, 340
TaqI	TCGA	3 cut(s)	167, 202, 988
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	5 cut(s)	100, 160, 204, 315, 689
TauI	GCSGC	2 cut(s)	602, 804
TfiI	GAWTC	4 cut(s)	61, 404, 496, 980
Tru1I	TTAA	2 cut(s)	725, 837
Tru9I	TTAA	2 cut(s)	725, 837
TscAI	CASTG	6 cut(s)	279, 315, 471, 496, 598, 834
TseFI	GTSAC	2 cut(s)	143, 695
Tsp45I	GTSAC	2 cut(s)	143, 695
TspDTI	ATGAA	2 cut(s)	47, 380
TspRI	CASTG	6 cut(s)	279, 315, 471, 496, 598, 834
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	2 cut(s)	429, 452
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	2 cut(s)	261, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.