pycom15g18650

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013231
Physical Location & Seq
Reverse (-)
13249221 .. 13249604
384 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGGAAGATTTCAGATCCAGATCGTGCGGTCACGGAACGTCGCAGATGGAGAGCTACAATGGCGGCAGCGGGTCGGCGGGACCCGCTTCGTCGGGGGTCAATGGGATGCAGGATCTCAGGTGCTACAGCGCCTCCTACGCGACCTCTGTGCACCAGCAGCAGCAGCAAAGCCAGGCGGGAAACAACGGCGAGAAGATTAGGAAGGGGAAGTCGGCGAACGGGTCGGCGACGAAGAGCTGGAGCCTGAGCGATCCGGAGCTGCAGAGGAAGAAGAGGGTGGCGAGTTATAAGGTGTATACGGTGGAAGGGAAGCTCAAAGGGTCGCTCCGGAAGAGCTTCCGGTGGCTCAAGGAAACATGTAATAGAGTCGTCTATGGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

128

Amino Acids

13.92

Weight (kDa)

9.97

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 83 - 126 1.1e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013231)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19460 AT2G19460
fragaria_vesca FvH4_1g07900
malus_domestica MD02G1082500.v1.1 MD11G1281800.v1.1 MD15G1210400.v1.1
prunus_persica Prupe.7G206300_v2.0.a1
pyrus_communis pycom02g06540 pycom15g18650
rosa_chinensis RchiOBHm_Chr2g0093771
rosa_laevigata RLG00000016435
rosa_multiflora Rmu_sc0012116.1_g000003
rosa_roxburghii Rroxscaffold_2G00147820
rosa_rugosa Rorug02G0039600
rosa_samantha Rh2AG086100 Rh2BG086400 Rh2CG088800 Rh2DG084500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AccI GTMKAC 1 cut(s) 296
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 2 cut(s) 253, 327
AciI CCGC 7 cut(s) 27, 63, 69, 77, 84, 176, 379
AclWI GGATC 3 cut(s) 9, 120, 245
AflIII ACRYGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 5 cut(s) 54, 237, 259, 313, 336
AluI AGCT 5 cut(s) 54, 237, 259, 313, 336
Alw21I GWGCWC 1 cut(s) 153
Alw44I GTGCAC 1 cut(s) 149
AlwI GGATC 3 cut(s) 9, 120, 245
Aor13HI TCCGGA 2 cut(s) 253, 327
ApaLI GTGCAC 1 cut(s) 149
ApeKI GCWGC 5 cut(s) 66, 157, 160, 163, 259
Asp700I GAANNNNTTC 1 cut(s) 335
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 5 cut(s) 78, 169, 172, 175, 246
BccI CCATC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 173
BfmI CTRYAG 2 cut(s) 124, 260
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 6 cut(s) 64, 67, 158, 161, 164, 260
BlsI GCNGC 6 cut(s) 65, 68, 159, 162, 165, 261
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 3 cut(s) 81, 82, 242
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 19
BsaWI WCCGGW 3 cut(s) 253, 327, 339
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse8I GATNNNNATC 1 cut(s) 19
BseAI TCCGGA 2 cut(s) 253, 327
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 19
BseMII CTCAG 2 cut(s) 130, 236
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 5 cut(s) 78, 169, 172, 175, 246
Bsh1236I CGCG 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 3 cut(s) 254, 328, 340
BslFI GGGAC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 2 cut(s) 253, 327
Bsp143I GATC 4 cut(s) 14, 20, 112, 250
BspACI CCGC 7 cut(s) 27, 63, 69, 77, 84, 176, 379
BspCNI CTCAG 2 cut(s) 129, 237
BspEI TCCGGA 2 cut(s) 253, 327
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 81, 82, 242
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 3 cut(s) 9, 120, 245
BspQI GCTCTTC 2 cut(s) 227, 326
BssMI GATC 4 cut(s) 14, 20, 112, 250
BssNAI GTATAC 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 3 cut(s) 227, 266, 326
BstDEI CTNAG 2 cut(s) 116, 245
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 17, 23, 115, 253
BstMBI GATC 4 cut(s) 14, 20, 112, 250
BstMWI GCNNNNNNNGC 5 cut(s) 60, 83, 137, 157, 163
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 171
BstSFI CTRYAG 2 cut(s) 124, 260
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 5 cut(s) 78, 169, 172, 175, 246
BstX2I RGATCY 2 cut(s) 14, 112
BstYI RGATCY 2 cut(s) 14, 112
BstZ17I GTATAC 1 cut(s) 297
BtsCI GGATG 1 cut(s) 111
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 80
CviAII CATG 1 cut(s) 357
CviJI RGCY 8 cut(s) 54, 171, 237, 243, 259, 313, 336, 346
CviKI_1 RGCY 8 cut(s) 54, 171, 237, 243, 259, 313, 336, 346
DdeI CTNAG 2 cut(s) 116, 245
DpnI GATC 4 cut(s) 16, 22, 114, 252
DpnII GATC 4 cut(s) 14, 20, 112, 250
Eam1104I CTCTTC 3 cut(s) 227, 266, 326
EarI CTCTTC 3 cut(s) 227, 266, 326
Eco47I GGWCC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 360
FaiI YATR 4 cut(s) 288, 297, 358, 375
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 356
FauI CCCGC 4 cut(s) 62, 70, 91, 169
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 6 cut(s) 64, 67, 158, 161, 164, 260
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 6 cut(s) 64, 67, 158, 161, 164, 260
GlaI GCGC 1 cut(s) 130
GluI GCNGC 6 cut(s) 64, 67, 158, 161, 164, 260
GsuI CTGGAG 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 132
HapII CCGG 3 cut(s) 254, 328, 340
HhaI GCGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 360
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 1 cut(s) 366
HpaII CCGG 3 cut(s) 254, 328, 340
Hpy166II GTNNAC 2 cut(s) 151, 297
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 18, 254, 328
Hpy8I GTNNAC 2 cut(s) 151, 297
Hpy99I CGWCG 3 cut(s) 43, 94, 232
HpyAV CCTTC 2 cut(s) 196, 299
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 109, 151, 262
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 83, 137, 157, 163
HpyF3I CTNAG 2 cut(s) 116, 245
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 1 cut(s) 360
HspAI GCGC 1 cut(s) 129
KflI GGGWCCC 1 cut(s) 80
Kpn2I TCCGGA 2 cut(s) 253, 327
Kzo9I GATC 4 cut(s) 14, 20, 112, 250
LguI GCTCTTC 2 cut(s) 227, 326
LmnI GCTCC 3 cut(s) 240, 256, 330
Lsp1109I GCAGC 5 cut(s) 78, 169, 172, 175, 246
LweI GCATC 1 cut(s) 96
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 29
MalI GATC 4 cut(s) 16, 22, 114, 252
MboI GATC 4 cut(s) 14, 20, 112, 250
MboII GAAGA 6 cut(s) 17, 205, 244, 280, 283, 343
MflI RGATCY 2 cut(s) 14, 112
MhlI GDGCHC 1 cut(s) 153
MlyI GAGTC 1 cut(s) 375
MnlI CCTC 4 cut(s) 142, 154, 258, 267
MroI TCCGGA 2 cut(s) 253, 327
MroXI GAANNNNTTC 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 254, 328, 340
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 5 cut(s) 60, 83, 137, 157, 163
NdeII GATC 4 cut(s) 14, 20, 112, 250
NlaIII CATG 1 cut(s) 360
NlaIV GGNNCC 3 cut(s) 81, 82, 242
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 360
PciI ACATGT 1 cut(s) 356
PciSI GCTCTTC 2 cut(s) 227, 326
PdmI GAANNNNTTC 1 cut(s) 335
PkrI GCNGC 6 cut(s) 65, 68, 159, 162, 165, 261
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 80
PscI ACATGT 1 cut(s) 356
PsiI TTATAA 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 3 cut(s) 81, 82, 242
PspPI GGNCC 1 cut(s) 80
PspPPI RGGWCCY 1 cut(s) 80
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 2 cut(s) 14, 112
SapI GCTCTTC 2 cut(s) 227, 326
SatI GCNGC 6 cut(s) 64, 67, 158, 161, 164, 260
Sau3AI GATC 4 cut(s) 14, 20, 112, 250
Sau96I GGNCC 1 cut(s) 80
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 153
SetI ASST 9 cut(s) 41, 56, 122, 146, 239, 261, 294, 315, 338
SfaNI GCATC 1 cut(s) 96
SfcI CTRYAG 2 cut(s) 124, 260
SinI GGWCC 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SsiI CCGC 7 cut(s) 27, 63, 69, 77, 84, 176, 379
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 41
TauI GCSGC 1 cut(s) 66
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 5 cut(s) 66, 157, 160, 163, 259
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 48
VneI GTGCAC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 80
XceI RCATGY 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 296
XmnI GAANNNNTTC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.