Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005082

Physical Location & Seq

Genomic Coordinates Reverse (-)

15297547 .. 15301760

Gene Structure 4214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCGTCGTGGGATCACTTGGGAGAAATTGCAAATGTGGCTCAGTTGACGGGCCTAGACGCTGTGAGGTTGATTGGACTGATAGTCAAGGCGGCAAACACGGCGCGAATGCACAAGAAGAATTGCAGGCAATTTGCACAGCATTTGAAGCTGATCGGGAACTTGTTGGAGCAGCTGATGATCTCGGAGCTTAAGAGGTATCCGGAGACAAGGGAGCCTCTGGAGCAGCTCGAGGAAGCTCTGAGGAGGTCTTACATTTTGGTCAATAGCTGCCAAGACCGGAGCTATCTGTATTTGCTTGCAATGGGATGGAACATTGTGTACCAGTTCAGAAAGGCTCAGAACGAAATTGATAGATACTTGAAGCTTGTGCCTCTGATTACTCTCGTGGACAACGCTCGAGTCAGGGAGAGATTGGAAGACATTGAAATGGATCAACGTGAATACACGTTGGACGATGAGGACAGAAAGGTACAGGAAGAGATCCTTAAACCAGACCCCTCAAAACATGACACTGTAGTACTGAAGAAAACACTTTCTTGCTCCTATCCGAACTTAGCTTTTAATGAGGCACTCCAAAAGGAAAATGAAAAGCTTCAACTTGAACTACAACGGTCGCAAGCTACTTATGATGTGGATCAATGTGAAGTAATTCAGCGTTTACTGGAAGTGACAGAAACCGTAGCTGCAAATTCTTCCCCCGAAAAAAGTAGTAAGAAAGTAGAGCGGAGTCAGTCAGATGCCAATAATGAGAAAGATCATTCATCTAATGAAAGCTATCAAAAAAGTGAATCTCGCAAAACTTCAAGAAGCACGTCTTCGGTTTCTTCTGGACATGATTTGTTGTCAACTAGAGGTTCACACCGGCATGAAGAATGGAATACTGATCTACTTGGATGTTGCTCAGAACCATTTCTGTGTATAAAGACATTCTTCTATCCTTGTGGGACGTTTTCAAAAATTGCTTCTGTGGCAACTAACAGGCCTATTTCTTCAGCAGAAGCATGTAATGAATTGATGGCTTATTCGCTAGTATTGTCATGCTGTTGCTATACATGCTGCATTAGAAGGAAACTTCGCAAGACGTTGAATATCTCGGGAGGCTTTATTGATGACTTCCTTTCACATTTCATGTGTTGCTGCTGTGCCCTTGTCCAAGAATGGCGAGAAGTCGAAATACGTGGGGTTCATTATGGTGCCGACAAGACAAAAATAAGCCCCCCAACCTCACAGTACATGGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

416

Amino Acids

47.54

Weight (kDa)

6.25

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	24 - 165	2.9e-83	MCAfunc domain
PLAC8	PF04749	293 - 390	3.7e-19	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35920 AT4G35920 AT4G35920 AT4G35920 AT4G35920
fragaria_vesca	FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310
malus_domestica	MD02G1127400.v1.1 MD15G1241400.v1.1
prunus_persica	Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1
pyrus_communis	pycom02g09950 pycom15g21290
rosa_chinensis	RchiOBHm_Chr2g0098791
rosa_laevigata	RLG00000016828
rosa_multiflora	Rmu_sc0002776.1_g000035
rosa_roxburghii	Rroxscaffold_2G00143700
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122600 Rh2BG126300 Rh2CG127200 Rh2DG128200
rosa_wichuraiana	Rw0G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1196
AccBSI	CCGCTC	1 cut(s)	727
AccII	CGCG	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	2 cut(s)	92, 727
AclWI	GGATC	4 cut(s)	21, 441, 478, 645
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	2 cut(s)	545, 978
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	323, 474, 522, 1235
AflII	CTTAAG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	8 cut(s)	148, 364, 428, 599, 605, 807, 957, 1090
AhdI	GACNNNNNGTC	1 cut(s)	83
AjiI	CACGTC	1 cut(s)	816
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	4 cut(s)	21, 441, 478, 645
Ama87I	CYCGRG	3 cut(s)	230, 399, 1096
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	2 cut(s)	52, 983
ApeKI	GCWGC	6 cut(s)	172, 226, 270, 686, 1059, 1140
ApoI	RAATTY	1 cut(s)	691
Asp700I	GAANNNNTTC	3 cut(s)	594, 651, 912
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	52
AvaI	CYCGRG	3 cut(s)	230, 399, 1096
BaeGI	GKGCMC	1 cut(s)	1150
BanI	GGYRCC	1 cut(s)	1196
BarI	GAAGNNNNNNTAC	2 cut(s)	1161, 1193
BauI	CACGAG	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	426, 810
BbvI	GCAGC	6 cut(s)	184, 238, 257, 673, 1046, 1127
BccI	CCATC	2 cut(s)	303, 1012
BceAI	ACGGC	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	56, 852, 1031
BfmI	CTRYAG	1 cut(s)	516
BfrI	CTTAAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	7 cut(s)	93, 173, 227, 271, 687, 1060, 1141
BlsI	GCNGC	7 cut(s)	94, 174, 228, 272, 688, 1061, 1142
BmcAI	AGTACT	1 cut(s)	522
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmeT110I	CYCGRG	3 cut(s)	230, 399, 1096
BmgBI	CACGTC	1 cut(s)	816
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	216, 1198
BmsI	GCATC	1 cut(s)	730
BpiI	GAAGAC	2 cut(s)	426, 810
BpmI	CTGGAG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	1181
BsaBI	GATNNNNATC	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	202, 279
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	2 cut(s)	325, 669
Bse3DI	GCAATG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	202
BseGI	GGATG	2 cut(s)	314, 902
BseJI	GATNNNNATC	1 cut(s)	636
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	4 cut(s)	56, 233, 353, 918
BseNI	ACTGG	2 cut(s)	325, 669
BseRI	GAGGAG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	1150
BseXI	GCAGC	6 cut(s)	184, 238, 257, 673, 1046, 1127
Bsh1236I	CGCG	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	2 cut(s)	54, 985
BshNI	GGYRCC	1 cut(s)	1196
BsiEI	CGRYCG	1 cut(s)	617
BsiHKCI	CYCGRG	3 cut(s)	230, 399, 1096
BsiSI	CCGG	3 cut(s)	203, 280, 865
BslFI	GGGAC	1 cut(s)	961
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	961
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	54, 985
BsoBI	CYCGRG	3 cut(s)	230, 399, 1096
Bsp1286I	GDGCHC	1 cut(s)	1150
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
BspACI	CCGC	2 cut(s)	92, 727
BspANI	GGCC	2 cut(s)	54, 985
BspCNI	CTCAG	4 cut(s)	55, 234, 352, 917
BspEI	TCCGGA	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	216, 1198
BspPI	GGATC	4 cut(s)	21, 441, 478, 645
BspT107I	GGYRCC	1 cut(s)	1196
BspTI	CTTAAG	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	864
BsrI	ACTGG	2 cut(s)	325, 669
BssAI	RCCGGY	1 cut(s)	864
BssMI	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst4CI	ACNGT	4 cut(s)	517, 615, 682, 1233
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	1181
BstC8I	GCNNGC	3 cut(s)	128, 300, 621
BstDEI	CTNAG	5 cut(s)	42, 242, 339, 556, 904
BstF5I	GGATG	2 cut(s)	314, 902
BstFNI	CGCG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	8 cut(s)	16, 156, 183, 436, 486, 640, 760, 889
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
BstMCI	CGRYCG	1 cut(s)	617
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 101, 148, 223, 971, 1056
BstNSI	RCATGY	2 cut(s)	1008, 1059
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	1 cut(s)	1150
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	6 cut(s)	184, 238, 257, 673, 1046, 1127
BstV2I	GAAGAC	2 cut(s)	426, 810
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	54, 985
BtrI	CACGTC	1 cut(s)	816
BtsCI	GGATG	2 cut(s)	314, 902
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	3 cut(s)	128, 300, 621
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	864
Cfr13I	GGNCC	1 cut(s)	52
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	4 cut(s)	322, 473, 521, 1234
CviAII	CATG	8 cut(s)	509, 836, 869, 1005, 1041, 1056, 1132, 1237
CviQI	GTAC	4 cut(s)	322, 473, 521, 1234
DdeI	CTNAG	5 cut(s)	42, 242, 339, 556, 904
DpnI	GATC	8 cut(s)	15, 155, 182, 435, 485, 639, 759, 888
DpnII	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
DriI	GACNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	474
Eam1105I	GACNNNNNGTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	985
Eco57I	CTGAAG	2 cut(s)	545, 978
Eco88I	CYCGRG	3 cut(s)	230, 399, 1096
FaeI	CATG	8 cut(s)	512, 839, 872, 1008, 1044, 1059, 1135, 1240
FalI	AAGNNNNNCTT	6 cut(s)	471, 503, 802, 834, 917, 949
FaqI	GGGAC	1 cut(s)	961
FatI	CATG	8 cut(s)	508, 835, 868, 1004, 1040, 1055, 1131, 1236
Fnu4HI	GCNGC	7 cut(s)	93, 173, 227, 271, 687, 1060, 1141
FokI	GGATG	2 cut(s)	321, 909
Fsp4HI	GCNGC	7 cut(s)	93, 173, 227, 271, 687, 1060, 1141
FspBI	CTAG	3 cut(s)	56, 852, 1031
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	7 cut(s)	93, 173, 227, 271, 687, 1060, 1141
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	54, 985
HapII	CCGG	3 cut(s)	203, 280, 865
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	512, 839, 872, 1008, 1044, 1059, 1135, 1240
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	2 cut(s)	48, 849
HindII	GTYRAC	2 cut(s)	48, 849
HindIII	AAGCTT	2 cut(s)	365, 593
HinfI	GANTC	3 cut(s)	402, 730, 791
HpaII	CCGG	3 cut(s)	203, 280, 865
Hpy166II	GTNNAC	6 cut(s)	48, 322, 391, 662, 849, 860
Hpy188I	TCNGA	8 cut(s)	187, 243, 332, 342, 378, 552, 739, 907
Hpy188III	TCNNGA	6 cut(s)	157, 203, 221, 807, 831, 1098
Hpy8I	GTNNAC	6 cut(s)	48, 322, 391, 662, 849, 860
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	1062
HpyCH4III	ACNGT	4 cut(s)	517, 615, 682, 1233
HpyCH4IV	ACGT	6 cut(s)	439, 449, 815, 950, 1085, 1180
HpyCH4V	TGCA	7 cut(s)	32, 112, 126, 137, 302, 689, 1062
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 101, 148, 223, 971, 1056
HpyF3I	CTNAG	5 cut(s)	42, 242, 339, 556, 904
HpySE526I	ACGT	6 cut(s)	439, 449, 815, 950, 1085, 1180
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	8 cut(s)	512, 839, 872, 1008, 1044, 1059, 1135, 1240
HspAI	GCGC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
LmnI	GCTCC	6 cut(s)	169, 187, 214, 223, 282, 548
Lsp1109I	GCAGC	6 cut(s)	184, 238, 257, 673, 1046, 1127
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	3 cut(s)	56, 852, 1031
MaeII	ACGT	6 cut(s)	439, 449, 815, 950, 1085, 1180
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	8 cut(s)	15, 155, 182, 435, 485, 639, 759, 888
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	1150
MluCI	AATT	8 cut(s)	27, 121, 131, 348, 651, 691, 960, 1013
MlyI	GAGTC	2 cut(s)	411, 739
MmeI	TCCRAC	2 cut(s)	147, 432
MroI	TCCGGA	1 cut(s)	202
MroXI	GAANNNNTTC	3 cut(s)	594, 651, 912
MseI	TTAA	3 cut(s)	192, 489, 564
MslI	CAYNNNNRTG	4 cut(s)	428, 867, 916, 1194
MspA1I	CMGCKG	1 cut(s)	175
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	3 cut(s)	203, 280, 865
Mva1269I	GAATGC	1 cut(s)	114
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	6 cut(s)	38, 101, 148, 223, 971, 1056
NdeII	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
NlaIII	CATG	8 cut(s)	512, 839, 872, 1008, 1044, 1059, 1135, 1240
NlaIV	GGNNCC	2 cut(s)	216, 1198
NmuCI	GTSAC	1 cut(s)	670
NspI	RCATGY	2 cut(s)	1008, 1059
PaeR7I	CTCGAG	2 cut(s)	230, 399
PceI	AGGCCT	1 cut(s)	985
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	3 cut(s)	594, 651, 912
PfeI	GAWTC	1 cut(s)	791
PkrI	GCNGC	7 cut(s)	94, 174, 228, 272, 688, 1061, 1142
PleI	GAGTC	2 cut(s)	410, 738
PpsI	GAGTC	2 cut(s)	410, 738
Ppu21I	YACGTR	1 cut(s)	1181
PspN4I	GGNNCC	2 cut(s)	216, 1198
PspPI	GGNCC	1 cut(s)	52
PspXI	VCTCGAGB	2 cut(s)	230, 399
PsrI	GAACNNNNNNTAC	2 cut(s)	305, 337
PsuI	RGATCY	1 cut(s)	483
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	4 cut(s)	323, 474, 522, 1235
RsaNI	GTAC	4 cut(s)	322, 473, 521, 1234
RseI	CAYNNNNRTG	4 cut(s)	428, 867, 916, 1194
SaqAI	TTAA	3 cut(s)	192, 489, 564
SatI	GCNGC	7 cut(s)	93, 173, 227, 271, 687, 1060, 1141
Sau3AI	GATC	8 cut(s)	13, 153, 180, 433, 483, 637, 757, 886
Sau96I	GGNCC	1 cut(s)	52
ScaI	AGTACT	1 cut(s)	522
SchI	GAGTC	2 cut(s)	411, 739
SduI	GDGCHC	1 cut(s)	1150
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	1 cut(s)	516
Sfr274I	CTCGAG	2 cut(s)	230, 399
SlaI	CTCGAG	2 cut(s)	230, 399
SmiMI	CAYNNNNRTG	4 cut(s)	428, 867, 916, 1194
SmlI	CTYRAG	3 cut(s)	191, 230, 399
SmoI	CTYRAG	3 cut(s)	191, 230, 399
Sse9I	AATT	8 cut(s)	27, 121, 131, 348, 651, 691, 960, 1013
SseBI	AGGCCT	1 cut(s)	985
SsiI	CCGC	2 cut(s)	92, 727
SspMI	CTAG	3 cut(s)	56, 852, 1031
StuI	AGGCCT	1 cut(s)	985
TaaI	ACNGT	4 cut(s)	517, 615, 682, 1233
TaiI	ACGT	6 cut(s)	442, 452, 818, 953, 1088, 1183
TaqI	TCGA	3 cut(s)	231, 400, 1173
TasI	AATT	8 cut(s)	27, 121, 131, 348, 651, 691, 960, 1013
TatI	WGTACW	2 cut(s)	520, 1233
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	3 cut(s)	192, 489, 564
Tru9I	TTAA	3 cut(s)	192, 489, 564
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	6 cut(s)	172, 226, 270, 686, 1059, 1140
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	7 cut(s)	603, 753, 786, 885, 1026, 1120, 1178
TspRI	CASTG	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	2 cut(s)	1008, 1059
XhoI	CTCGAG	2 cut(s)	230, 399
XmnI	GAANNNNTTC	3 cut(s)	594, 651, 912
XspI	CTAG	3 cut(s)	56, 852, 1031
ZrmI	AGTACT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.