Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Reverse (-)

15807400 .. 15809888

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGATGGAGTCAATCGAGTCTACTGTCCCACCTGGTTTCCGCTTTCATCCGACGGATGAAGAGCTCGTCGGGTACTATCTTAGAAAGAAAGTTGCCTCCCAGAAGATCGATCTTGATGTCATCAGAGACATTGATCTCTACAGAATCGAACCATGGGATCTTCAAGAGAGATGTCGGATCGGGTATGAAGAGCAGAACGAGTGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCAACTGGGACAAGGACCAACAGAGCAACCATGGCTGGGTTTTGGAAGGCAACGGGTCGAGACAAATCAGTATATGATAAGGCAAAACTGATCGGGATGAGGAAAACCCTCGTCTTCTACAAAGGAAGGGCTCCAAATGGACAGAAGACTGATTGGATCATGCACGAATACAGGCTCGAATCTGACGAAAATGGACCTCCGCAGGAAGAAGGATGGGTGGTATGCAGAGCATTCAAGAAGAGAATCAGTAGCCAAAACAAAAGCATTGAAGGCTGGGACTCAAGCTACTTCTACGAAGAACTTAACGGTCTCACTTCCGTCGCTGATCCAACGGATTATATGAGGCAGCCCCAGAGCTTTTTAAGCCAGAATTTCATGTGCAAGCAAGAGACAGAAGCTGATAGTTTGAACTTCCTGCACTCTGATCCGTTTGTCCAGCTTCCTCAGCTTGAGAGCCCGTCTCTTCCCTTAATAAAGCGGCCGACCTCAATGTCTCTTATCTCTGAGAACAATACCGAGTTAGAAGACGAGCAAAGTATTCGAGGGTGCAACAATGCCGAGAAGGTTACTGACTGGAGGGCTCTGGACAAGTTTGTGGCTTCACAGCTAAGTCAAGAGGAGAGGTATGAAGGTGATGGAGAGGCAAGCTTTGGTGCACATGATGAATCAGATATGTCATTGTTGTTGTTGCAGAGTAGTAGTGCTAGGGATGATGATGATCAAGTGGAGAACAAGTTAAATGGGTTCCTGAATTCGAGTCCTGACTGTGATATTGGGATATGCATATTTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

344

Amino Acids

39.63

Weight (kDa)

4.83

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 137	7.5e-49	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	724
AccI	GTMKAC	1 cut(s)	20
AciI	CCGC	3 cut(s)	40, 434, 712
AclWI	GGATC	5 cut(s)	165, 185, 398, 554, 653
AcoI	YGGCCR	1 cut(s)	713
AcsI	RAATTY	2 cut(s)	604, 985
AfaI	GTAC	2 cut(s)	74, 206
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	5 cut(s)	164, 469, 503, 643, 1025
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	8 cut(s)	64, 519, 591, 632, 673, 682, 841, 882
AluI	AGCT	8 cut(s)	64, 519, 591, 632, 673, 682, 841, 882
Alw21I	GWGCWC	2 cut(s)	66, 892
Alw26I	GTCTC	6 cut(s)	120, 288, 548, 617, 699, 732
Alw44I	GTGCAC	1 cut(s)	888
AlwI	GGATC	5 cut(s)	165, 185, 398, 554, 653
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	713
ApaLI	GTGCAC	1 cut(s)	888
ApeKI	GCWGC	1 cut(s)	580
ApoI	RAATTY	2 cut(s)	604, 985
AspS9I	GGNCC	2 cut(s)	249, 428
AsuHPI	GGTGA	1 cut(s)	878
AvaII	GGWCC	2 cut(s)	249, 428
BaeGI	GKGCMC	1 cut(s)	892
BanII	GRGCYC	4 cut(s)	66, 367, 692, 817
BbsI	GAAGAC	3 cut(s)	340, 386, 765
Bbv12I	GWGCWC	2 cut(s)	66, 892
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	2 cut(s)	441, 863
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	1 cut(s)	33
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	952
BcoDI	GTCTC	6 cut(s)	120, 288, 548, 617, 699, 732
BfaI	CTAG	1 cut(s)	939
BfmI	CTRYAG	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	581, 713
BlsI	GCNGC	2 cut(s)	582, 714
Bme1390I	CCNGG	1 cut(s)	33
Bme18I	GGWCC	2 cut(s)	249, 428
BmgT120I	GGNCC	2 cut(s)	249, 428
BmiI	GGNNCC	2 cut(s)	366, 980
BmrFI	CCNGG	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BpiI	GAAGAC	3 cut(s)	340, 386, 765
BplI	GAGNNNNNCTC	2 cut(s)	679, 711
BpmI	CTGGAG	1 cut(s)	829
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	2 cut(s)	499, 704
Bsa29I	ATCGAT	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	152, 264
BsaXI	ACNNNNNCTCC	2 cut(s)	953, 983
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	244, 812
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	152, 264
BseGI	GGATG	5 cut(s)	46, 61, 336, 452, 949
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	692, 729
BseNI	ACTGG	2 cut(s)	244, 812
BseRI	GAGGAG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	892
BseX3I	CGGCCG	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	592
BseYI	CCCAGC	2 cut(s)	269, 507
BsgI	GTGCAG	1 cut(s)	635
Bsh1285I	CGRYCG	1 cut(s)	716
BshFI	GGCC	1 cut(s)	715
BshVI	ATCGAT	1 cut(s)	108
BsiEI	CGRYCG	1 cut(s)	716
BsiHKAI	GWGCWC	2 cut(s)	66, 892
BslFI	GGGAC	3 cut(s)	11, 256, 524
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	6 cut(s)	120, 288, 548, 617, 699, 732
BsmBI	CGTCTC	1 cut(s)	699
BsmFI	GGGAC	3 cut(s)	11, 256, 524
BsmI	GAATGC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	715
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	5 cut(s)	66, 367, 692, 817, 892
Bsp19I	CCATGG	2 cut(s)	152, 264
BspACI	CCGC	3 cut(s)	40, 434, 712
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	2 cut(s)	691, 730
BspDI	ATCGAT	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	366, 980
BspPI	GGATC	5 cut(s)	165, 185, 398, 554, 653
BspQI	GCTCTTC	2 cut(s)	54, 183
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	2 cut(s)	244, 812
BssECI	CCNNGG	2 cut(s)	152, 264
BssT1I	CCWWGG	2 cut(s)	152, 264
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	25, 542, 1001
Bst6I	CTCTTC	4 cut(s)	54, 183, 467, 702
BstC8I	GCNNGC	2 cut(s)	617, 880
BstDEI	CTNAG	4 cut(s)	80, 678, 738, 842
BstDSI	CCRYGG	2 cut(s)	152, 264
BstF5I	GGATG	5 cut(s)	46, 61, 336, 452, 949
BstMAI	GTCTC	6 cut(s)	120, 288, 548, 617, 699, 732
BstMCI	CGRYCG	1 cut(s)	716
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 504, 597, 679
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	3 cut(s)	340, 386, 765
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BstZI	CGGCCG	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	715
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	2 cut(s)	152, 264
BtsCI	GGATG	5 cut(s)	46, 61, 336, 452, 949
Cac8I	GCNNGC	2 cut(s)	617, 880
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr13I	GGNCC	2 cut(s)	249, 428
ClaI	ATCGAT	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	73, 205
CviAII	CATG	5 cut(s)	153, 265, 394, 610, 893
CviQI	GTAC	2 cut(s)	73, 205
DdeI	CTNAG	4 cut(s)	80, 678, 738, 842
DrdI	GACNNNNNNGTC	1 cut(s)	724
DseDI	GACNNNNNNGTC	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	713
EagI	CGGCCG	1 cut(s)	713
Eam1104I	CTCTTC	4 cut(s)	54, 183, 467, 702
EarI	CTCTTC	4 cut(s)	54, 183, 467, 702
Ecl136II	GAGCTC	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	713
Eco130I	CCWWGG	2 cut(s)	152, 264
Eco24I	GRGCYC	4 cut(s)	66, 367, 692, 817
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	249, 428
Eco52I	CGGCCG	1 cut(s)	713
Eco53kI	GAGCTC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	2 cut(s)	152, 264
EcoT22I	ATGCAT	1 cut(s)	1019
EcoT38I	GRGCYC	4 cut(s)	66, 367, 692, 817
ErhI	CCWWGG	2 cut(s)	152, 264
Esp3I	CGTCTC	1 cut(s)	699
FaeI	CATG	5 cut(s)	156, 268, 397, 613, 896
FaqI	GGGAC	3 cut(s)	11, 256, 524
FatI	CATG	5 cut(s)	152, 264, 393, 609, 892
FbaI	TGATCA	1 cut(s)	952
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	2 cut(s)	581, 713
FokI	GGATG	5 cut(s)	33, 68, 343, 459, 956
FriOI	GRGCYC	4 cut(s)	66, 367, 692, 817
Fsp4HI	GCNGC	2 cut(s)	581, 713
FspBI	CTAG	1 cut(s)	939
GluI	GCNGC	2 cut(s)	581, 713
GsaI	CCCAGC	2 cut(s)	273, 511
GsuI	CTGGAG	1 cut(s)	829
HaeIII	GGCC	1 cut(s)	715
Hin1II	CATG	5 cut(s)	156, 268, 397, 613, 896
HindIII	AAGCTT	1 cut(s)	880
HinfI	GANTC	8 cut(s)	8, 17, 144, 413, 477, 512, 899, 991
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	2 cut(s)	21, 890
Hpy188I	TCNGA	7 cut(s)	51, 125, 177, 418, 658, 739, 904
Hpy188III	TCNNGA	9 cut(s)	113, 164, 293, 328, 469, 818, 848, 982, 995
Hpy8I	GTNNAC	2 cut(s)	21, 890
Hpy99I	CGWCG	3 cut(s)	55, 71, 557
HpyAV	CCTTC	6 cut(s)	274, 354, 437, 497, 790, 857
HpyCH4III	ACNGT	3 cut(s)	25, 542, 1001
HpyCH4V	TGCA	8 cut(s)	397, 459, 615, 652, 783, 890, 925, 1017
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 504, 597, 679
HpyF3I	CTNAG	4 cut(s)	80, 678, 738, 842
Hsp92II	CATG	5 cut(s)	156, 268, 397, 613, 896
Ksp22I	TGATCA	1 cut(s)	952
LguI	GCTCTTC	2 cut(s)	54, 183
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	592
MabI	ACCWGGT	1 cut(s)	31
MaeI	CTAG	1 cut(s)	939
MaeIII	GTNAC	1 cut(s)	799
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	5 cut(s)	66, 367, 692, 817, 892
MluCI	AATT	2 cut(s)	604, 985
MlyI	GAGTC	4 cut(s)	17, 26, 506, 1000
MmeI	TCCRAC	4 cut(s)	74, 155, 260, 587
Mph1103I	ATGCAT	1 cut(s)	1019
MseI	TTAA	4 cut(s)	537, 596, 704, 971
MspR9I	CCNGG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	464
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	266, 504, 597, 679
NcoI	CCATGG	2 cut(s)	152, 264
NlaIII	CATG	5 cut(s)	156, 268, 397, 613, 896
NlaIV	GGNNCC	2 cut(s)	366, 980
NmeAIII	GCCGAG	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	1019
PciSI	GCTCTTC	2 cut(s)	54, 183
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	464
PfeI	GAWTC	4 cut(s)	144, 413, 477, 899
PkrI	GCNGC	2 cut(s)	582, 714
PleI	GAGTC	4 cut(s)	16, 25, 506, 999
PpsI	GAGTC	4 cut(s)	16, 25, 506, 999
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	2 cut(s)	269, 507
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	366, 980
PspPI	GGNCC	2 cut(s)	249, 428
PsrI	GAACNNNNNNTAC	2 cut(s)	188, 220
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	74, 206
RsaNI	GTAC	2 cut(s)	73, 205
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	2 cut(s)	54, 183
SaqAI	TTAA	4 cut(s)	537, 596, 704, 971
SatI	GCNGC	2 cut(s)	581, 713
Sau96I	GGNCC	2 cut(s)	249, 428
SchI	GAGTC	4 cut(s)	17, 26, 506, 1000
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	5 cut(s)	66, 367, 692, 817, 892
SexAI	ACCWGGT	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	139
SinI	GGWCC	2 cut(s)	249, 428
SmlI	CTYRAG	2 cut(s)	514, 683
SmoI	CTYRAG	2 cut(s)	514, 683
Sse9I	AATT	2 cut(s)	604, 985
SsiI	CCGC	3 cut(s)	40, 434, 712
SspMI	CTAG	1 cut(s)	939
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	152, 264
TaaI	ACNGT	3 cut(s)	25, 542, 1001
TaqI	TCGA	7 cut(s)	15, 108, 147, 292, 411, 775, 989
TasI	AATT	2 cut(s)	604, 985
TauI	GCSGC	1 cut(s)	715
TfiI	GAWTC	4 cut(s)	144, 413, 477, 899
Tru1I	TTAA	4 cut(s)	537, 596, 704, 971
Tru9I	TTAA	4 cut(s)	537, 596, 704, 971
TseI	GCWGC	1 cut(s)	580
TspDTI	ATGAA	6 cut(s)	35, 72, 201, 598, 876, 912
TspGWI	ACGGA	4 cut(s)	68, 541, 581, 651
VneI	GTGCAC	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	249, 428
XapI	RAATTY	2 cut(s)	604, 985
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	1 cut(s)	939
Zsp2I	ATGCAT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.