Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008672

Physical Location & Seq

Genomic Coordinates Forward (+)

16917527 .. 16919507

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCACATCGTGGATCAACTTGATTTCTCTTTCCTATATGGTGCTGGAGTTCCTATATCATCTTCTGGGAATTTGCTTGGGGAATTTGAAATTCTATCGAAGCGCTTGCGGCTTCTTGAAGACATTCCACTGAAGGTTTCTACTGTGCAGCCCCTTGATTCAGCTTTCCGGTTTTCATCTGTCTTCCCACCTGAACCTCATCAGCTTGCTAATGAGAAGGGTGCTTTTGTAAGACTAGATAGGTTCACTCCTTCCTGCATTCATCCGCTGGAAGTTATGATCCAGTTGGAAGGTTCTGGAAACTGGCCAATGGATGATGTAGCAATTGAGAAAACTAAATCTGCCTTCCTTCTCAAGATTGGAGAGAGTCTCCAGAATAATTGGGGGATGACGTGTACAGCTATGGAGGTTGATGTGGATGTTTTTGTTTCTGGATATGCATTTCGCCTGAAAATTTGGCATGAGAGAGGCCTCACTTTGTTGAGACGGGAAAATGGAAATGATCAAGTGAAGCAGGTCTCTAATACAGACAGAGAACTTTATTTCCGAAGTCAACATTCCAGCATGATTAATGGATTACAGGGTTGTTACGCAGCATATGGGCCAGTTGTTAGGCTTGCAAAGCGGTGGGTAGCTTCACATCTGTTTTCGGCTTGCTTGAGGGAGGAGGCAATTGAACTATTGGTTGCATACGTCTTTTTGAAGCCTTTACCATTCAATGCTCCATGCTCACGAATCACTGGATTTTTGAGGTTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

254

Amino Acids

28.59

Weight (kDa)

6.6

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nrap_D4	PF17405	20 - 194	5.2e-45	Nrap protein nucleotidyltransferase domain 4
Nrap_D5	PF17406	197 - 253	1.3e-20	Nrap protein PAP/OAS1-like domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63810 AT1G63810
fragaria_vesca	FvH4_1g13250 FvH4_1g13250
malus_domestica	MD02G1146900.v1.1 MD15G1261100.v1.1
prunus_persica	Prupe.7G155300_v2.0.a1 Prupe.7G155300_v2.0.a1 Prupe.7G155300_v2.0.a1
pyrus_communis	pycom02g11620 pycom15g22840 pycom15g22850
rosa_chinensis	RchiOBHm_Chr2g0101431 RchiOBHm_Chr2g0101471
rosa_laevigata	RLG00000017080
rosa_multiflora	Rmu_sc0006153.1_g000056
rosa_roxburghii	Rroxscaffold_2G00141310
rosa_rugosa	Rorug02G0098300
rosa_samantha	Rh2AG147000 Rh2BG152300 Rh2CG152800 Rh2DG152400
rosa_wichuraiana	Rw2G011460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
AciI	CCGC	3 cut(s)	109, 266, 625
AclWI	GGATC	2 cut(s)	21, 274
AcoI	YGGCCR	1 cut(s)	305
AcsI	RAATTY	4 cut(s)	70, 83, 90, 453
AcuI	CTGAAG	1 cut(s)	152
AdeI	CACNNNGTG	1 cut(s)	10
AfaI	GTAC	1 cut(s)	397
AfeI	AGCGCT	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	392
AgsI	TTSAA	5 cut(s)	89, 119, 677, 703, 718
AjiI	CACGTC	1 cut(s)	393
AloI	GAACNNNNNNTCC	2 cut(s)	528, 560
AluBI	AGCT	4 cut(s)	164, 205, 401, 635
AluI	AGCT	4 cut(s)	164, 205, 401, 635
Alw26I	GTCTC	3 cut(s)	374, 478, 523
AlwI	GGATC	2 cut(s)	21, 274
Aor51HI	AGCGCT	1 cut(s)	104
AoxI	GGCC	3 cut(s)	305, 469, 602
ApeKI	GCWGC	2 cut(s)	148, 593
ApoI	RAATTY	4 cut(s)	70, 83, 90, 453
AseI	ATTAAT	1 cut(s)	570
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	307
BbsI	GAAGAC	2 cut(s)	126, 175
BbvI	GCAGC	2 cut(s)	160, 605
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	3 cut(s)	374, 478, 523
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	3 cut(s)	110, 149, 594
BlsI	GCNGC	3 cut(s)	111, 150, 595
BmgBI	CACGTC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	755
BpiI	GAAGAC	2 cut(s)	126, 175
BplI	GAGNNNNNCTC	2 cut(s)	354, 386
BpmI	CTGGAG	2 cut(s)	66, 356
BpuEI	CTTGAG	2 cut(s)	338, 679
BsaI	GGTCTC	1 cut(s)	523
BsaWI	WCCGGW	1 cut(s)	168
Bse1I	ACTGG	4 cut(s)	283, 308, 605, 745
BseGI	GGATG	4 cut(s)	262, 319, 393, 424
BseNI	ACTGG	4 cut(s)	283, 308, 605, 745
BseRI	GAGGAG	1 cut(s)	680
BseXI	GCAGC	2 cut(s)	160, 605
BsgI	GTGCAG	1 cut(s)	167
BshFI	GGCC	3 cut(s)	307, 471, 604
BsiSI	CCGG	1 cut(s)	169
BsmAI	GTCTC	3 cut(s)	374, 478, 523
BsmBI	CGTCTC	1 cut(s)	478
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	3 cut(s)	307, 471, 604
Bso31I	GGTCTC	1 cut(s)	523
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	13, 279, 502
BspACI	CCGC	3 cut(s)	109, 266, 625
BspANI	GGCC	3 cut(s)	307, 471, 604
BspLI	GGNNCC	1 cut(s)	755
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	2 cut(s)	21, 274
BspTNI	GGTCTC	1 cut(s)	523
BsrGI	TGTACA	1 cut(s)	395
BsrI	ACTGG	4 cut(s)	283, 308, 605, 745
BssMI	GATC	3 cut(s)	13, 279, 502
Bst4CI	ACNGT	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	107, 207, 618, 655
BstF5I	GGATG	4 cut(s)	262, 319, 393, 424
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	16, 282, 505
BstMAI	GTCTC	3 cut(s)	374, 478, 523
BstMBI	GATC	3 cut(s)	13, 279, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 622
BstV1I	GCAGC	2 cut(s)	160, 605
BstV2I	GAAGAC	2 cut(s)	126, 175
BsuRI	GGCC	3 cut(s)	307, 471, 604
BtrI	CACGTC	1 cut(s)	393
BtsCI	GGATG	4 cut(s)	262, 319, 393, 424
BtsIMutI	CAGTG	2 cut(s)	128, 738
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	4 cut(s)	107, 207, 618, 655
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	3 cut(s)	461, 565, 726
CviQI	GTAC	1 cut(s)	396
DpnI	GATC	3 cut(s)	15, 281, 504
DpnII	GATC	3 cut(s)	13, 279, 502
DraIII	CACNNNGTG	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	305
Eco147I	AGGCCT	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	523
Eco47III	AGCGCT	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	478
FaeI	CATG	3 cut(s)	464, 568, 729
FatI	CATG	3 cut(s)	460, 564, 725
FauNDI	CATATG	1 cut(s)	598
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	110, 149, 594
FokI	GGATG	4 cut(s)	249, 326, 400, 431
Fsp4HI	GCNGC	3 cut(s)	110, 149, 594
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	110, 149, 594
GsuI	CTGGAG	2 cut(s)	66, 356
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	3 cut(s)	307, 471, 604
HapII	CCGG	1 cut(s)	169
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	3 cut(s)	464, 568, 729
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	554
HindII	GTYRAC	1 cut(s)	554
HinfI	GANTC	3 cut(s)	158, 367, 735
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	246, 396, 554
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	6 cut(s)	116, 297, 355, 373, 432, 732
Hpy8I	GTNNAC	3 cut(s)	246, 396, 554
HpyAV	CCTTC	6 cut(s)	127, 211, 261, 284, 355, 359
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	392, 693
HpyCH4V	TGCA	6 cut(s)	4, 148, 258, 440, 620, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 622
HpySE526I	ACGT	2 cut(s)	392, 693
Hsp92II	CATG	3 cut(s)	464, 568, 729
HspAI	GCGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	3 cut(s)	13, 279, 502
LmnI	GCTCC	1 cut(s)	727
Lsp1109I	GCAGC	2 cut(s)	160, 605
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	2 cut(s)	392, 693
MaeIII	GTNAC	1 cut(s)	587
MalI	GATC	3 cut(s)	15, 281, 504
MboI	GATC	3 cut(s)	13, 279, 502
MboII	GAAGA	3 cut(s)	54, 131, 175
MfeI	CAATTG	2 cut(s)	324, 672
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	7 cut(s)	70, 83, 90, 324, 379, 453, 672
MluNI	TGGCCA	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	207, 400, 461, 482, 654, 658, 661, 744
Mox20I	TGGCCA	1 cut(s)	307
Mph1103I	ATGCAT	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	169
MunI	CAATTG	2 cut(s)	324, 672
Mva1269I	GAATGC	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	109, 622
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	3 cut(s)	13, 279, 502
NlaIII	CATG	3 cut(s)	464, 568, 729
NlaIV	GGNNCC	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	471
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	158, 735
PkrI	GCNGC	3 cut(s)	111, 150, 595
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PshBI	ATTAAT	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	755
PspPI	GGNCC	1 cut(s)	602
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	3 cut(s)	110, 149, 594
Sau3AI	GATC	3 cut(s)	13, 279, 502
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	353, 658
SmoI	CTYRAG	2 cut(s)	353, 658
Sse9I	AATT	7 cut(s)	70, 83, 90, 324, 379, 453, 672
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	3 cut(s)	109, 266, 625
SspMI	CTAG	1 cut(s)	236
StuI	AGGCCT	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	395, 696
TaqI	TCGA	1 cut(s)	98
TasI	AATT	7 cut(s)	70, 83, 90, 324, 379, 453, 672
TatI	WGTACW	1 cut(s)	395
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	158, 735
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	2 cut(s)	135, 745
TseI	GCWGC	2 cut(s)	148, 593
TspDTI	ATGAA	2 cut(s)	165, 251
TspRI	CASTG	2 cut(s)	135, 745
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	4 cut(s)	70, 83, 90, 453
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	1 cut(s)	236
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.