Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008672

Physical Location & Seq

Genomic Coordinates Forward (+)

13094993 .. 13098397

Gene Structure 3405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47607

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGACATGTATAGCCACTGAGGATGATGTGGATGTTTTTGTGTCTGGATATGCCTTTCGTCTTAAAATTTGGCATGAGAGAGGCCTGACTTTGTTGAGACGAGAAACTGGGAATGAACACGTGAAGAAGGTTTCTAATGTGGACAAGGAACTATACTTTCGCAGTCAACATTCCAGCATGATAAATGGATTCCAGACTTGTTTCCCAGCATATGGGCCAGTTGTTAGGCTTGCAAAACGATGGGCTGCTTCACATCTATTTTCGGCTAGCTTGGTAGAGGAGGCAATTGAGCTATTGGTAGCATATATATTTTTGAAGCCTTTACCATTTAATGCTCCATGCTCACGGGTCACTGGATTTTTAAGGTTCCTGCGATTACTATCAGATTATGACTGGACCTTTTCTGCATTAGTTGTTGACATAAATAATGATTTAACATCAAATGATGAGAAAGAGATAAGAGAGAACTTCATGTTAAGTAGAAAAGGTTATGAAGAAAATCCTCAAAATGTAAACTCAGCAATGTTCCTAGCTACATCCTACGACAAGGCATCTGAGGCTTGGACCAAATTTTCACCAAACTCAATGCTAAAAAGGTTGATGGCTTATGCTGGAAGCAGTGCAAACTTGTTGACCAAACTGATATTGGAGGACCATAGTGATTCTTATAGATGGGAGTGCCTTTTTCGAACTCCTTTGAACAATTATGATGCTGTAATTCTTCTCCATAGAGAAAAATTACCTTATCCCCAACGCCTTCTCTTTCCATCAGAATTACATCAAGGGGTTCATGTGGCACGTGGGAATGCGAGCAAGGGTTTCCACCCCTTTCTTTTGCCTGGAGATTTTAAAGGAAGCTCAGAGGATCTAAGAAACAAAGTATTGGTAAACTTCGATCCGCTGAGGTGTTTTGTTGGGGATCTAGAGAAAGAGTACTCAAACACTTTCAAGCTATGGTATGATTGTCTGGGTGGTGATGCTGTTGGAATAACATGGGGAGGATGTATTTCAAAGAAACGGGGCCGGGAAGAAGCAGATGAGGAAGTAAAGGATCCAATTGATTTGTTAAAAGATGTTGGTAAAGTTGGAACAGGGTTCGTCAGGGGCATTTATCTTCTAAAAGCCCCAAGGCGGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

379

Amino Acids

43.22

Weight (kDa)

7.61

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nrap_D4	PF17405	5 - 66	2.1e-07	Nrap protein nucleotidyltransferase domain 4
Nrap_D5	PF17406	68 - 219	8.2e-47	Nrap protein PAP/OAS1-like domain 5
Nrap_D6	PF17407	233 - 340	8e-13	Nrap protein domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63810 AT1G63810
fragaria_vesca	FvH4_1g13250 FvH4_1g13250
malus_domestica	MD02G1146900.v1.1 MD15G1261100.v1.1
prunus_persica	Prupe.7G155300_v2.0.a1 Prupe.7G155300_v2.0.a1 Prupe.7G155300_v2.0.a1
pyrus_communis	pycom02g11620 pycom15g22840 pycom15g22850
rosa_chinensis	RchiOBHm_Chr2g0101431 RchiOBHm_Chr2g0101471
rosa_laevigata	RLG00000017080
rosa_multiflora	Rmu_sc0006153.1_g000056
rosa_roxburghii	Rroxscaffold_2G00141310
rosa_rugosa	Rorug02G0098300
rosa_samantha	Rh2AG147000 Rh2BG152300 Rh2CG152800 Rh2DG152400
rosa_wichuraiana	Rw2G011460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AciI	CCGC	2 cut(s)	899, 1132
AclWI	GGATC	5 cut(s)	873, 890, 927, 1046, 1059
AcsI	RAATTY	2 cut(s)	66, 569
AcvI	CACGTG	2 cut(s)	121, 800
AfaI	GTAC	1 cut(s)	935
AfiI	CCNNNNNNNGG	2 cut(s)	212, 1131
AflIII	ACRYGT	2 cut(s)	5, 118
AgsI	TTSAA	4 cut(s)	316, 700, 949, 1011
AjnI	CCWGG	1 cut(s)	838
AluBI	AGCT	5 cut(s)	270, 292, 533, 858, 952
AluI	AGCT	5 cut(s)	270, 292, 533, 858, 952
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	5 cut(s)	873, 890, 927, 1046, 1059
AoxI	GGCC	3 cut(s)	82, 215, 1021
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	2 cut(s)	66, 569
AspS9I	GGNCC	5 cut(s)	215, 396, 564, 652, 1021
AsuC2I	CCSGG	1 cut(s)	1025
AsuHPI	GGTGA	2 cut(s)	567, 986
AsuII	TTCGAA	1 cut(s)	688
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	3 cut(s)	396, 564, 652
BamHI	GGATCC	1 cut(s)	1051
BbrPI	CACGTG	2 cut(s)	121, 800
BbvCI	CCTCAGC	1 cut(s)	902
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	4 cut(s)	234, 595, 666, 775
BciT130I	CCWGG	1 cut(s)	840
BcnI	CCSGG	1 cut(s)	1025
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	3 cut(s)	267, 530, 923
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	840, 1025
Bme18I	GGWCC	3 cut(s)	396, 564, 652
BmgT120I	GGNCC	5 cut(s)	215, 396, 564, 652, 1021
BmiI	GGNNCC	3 cut(s)	368, 1022, 1053
BmrFI	CCNGG	2 cut(s)	840, 1025
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	3 cut(s)	560, 700, 967
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	861
Bpu10I	CCTNAGC	1 cut(s)	902
Bpu14I	TTCGAA	1 cut(s)	688
BpuMI	CCSGG	1 cut(s)	1025
BsaAI	YACGTR	2 cut(s)	121, 800
BsaBI	GATNNNNATC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	1127
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 1131
Bse1I	ACTGG	4 cut(s)	112, 218, 358, 398
Bse3DI	GCAATG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	1 cut(s)	1127
BseGI	GGATG	4 cut(s)	28, 37, 536, 1007
BseJI	GATNNNNATC	1 cut(s)	379
BseLI	CCNNNNNNNGG	2 cut(s)	212, 1131
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	5 cut(s)	9, 531, 546, 873, 893
BseNI	ACTGG	4 cut(s)	112, 218, 358, 398
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	1136
BshFI	GGCC	3 cut(s)	84, 217, 1023
BsiEI	CGRYCG	1 cut(s)	1136
BsiSI	CCGG	1 cut(s)	1024
BslI	CCNNNNNNNGG	2 cut(s)	212, 1131
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	811
BsnI	GGCC	3 cut(s)	84, 217, 1023
Bsp119I	TTCGAA	1 cut(s)	688
Bsp143I	GATC	4 cut(s)	865, 895, 919, 1051
BspACI	CCGC	2 cut(s)	899, 1132
BspANI	GGCC	3 cut(s)	84, 217, 1023
BspCNI	CTCAG	5 cut(s)	10, 530, 547, 872, 894
BspLI	GGNNCC	3 cut(s)	368, 1022, 1053
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	5 cut(s)	873, 890, 927, 1046, 1059
BspT104I	TTCGAA	1 cut(s)	688
BsrDI	GCAATG	1 cut(s)	528
BsrI	ACTGG	4 cut(s)	112, 218, 358, 398
BssECI	CCNNGG	1 cut(s)	1127
BssMI	GATC	4 cut(s)	865, 895, 919, 1051
BssT1I	CCWWGG	1 cut(s)	1127
Bst2UI	CCWGG	1 cut(s)	840
BstBAI	YACGTR	2 cut(s)	121, 800
BstBI	TTCGAA	1 cut(s)	688
BstC8I	GCNNGC	3 cut(s)	231, 268, 811
BstDEI	CTNAG	6 cut(s)	18, 517, 555, 859, 869, 902
BstF5I	GGATG	4 cut(s)	28, 37, 536, 1007
BstKTI	GATC	4 cut(s)	868, 898, 922, 1054
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	4 cut(s)	865, 895, 919, 1051
BstMCI	CGRYCG	1 cut(s)	1136
BstMWI	GCNNNNNNNGC	1 cut(s)	557
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	838, 1023
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	3 cut(s)	865, 919, 1051
BstYI	RGATCY	3 cut(s)	865, 919, 1051
BsuRI	GGCC	3 cut(s)	84, 217, 1023
BtsCI	GGATG	4 cut(s)	28, 37, 536, 1007
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	3 cut(s)	15, 351, 625
Cac8I	GCNNGC	3 cut(s)	231, 268, 811
Cfr13I	GGNCC	5 cut(s)	215, 396, 564, 652, 1021
Csp6I	GTAC	1 cut(s)	934
CviAII	CATG	7 cut(s)	6, 74, 178, 339, 472, 791, 993
CviQI	GTAC	1 cut(s)	934
DdeI	CTNAG	6 cut(s)	18, 517, 555, 859, 869, 902
DpnI	GATC	4 cut(s)	867, 897, 921, 1053
DpnII	GATC	4 cut(s)	865, 895, 919, 1051
DraI	TTTAAA	1 cut(s)	850
Eco130I	CCWWGG	1 cut(s)	1127
Eco147I	AGGCCT	1 cut(s)	84
Eco47I	GGWCC	3 cut(s)	396, 564, 652
Eco72I	CACGTG	2 cut(s)	121, 800
EcoRII	CCWGG	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	1127
ErhI	CCWWGG	1 cut(s)	1127
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	7 cut(s)	9, 77, 181, 342, 475, 794, 996
FatI	CATG	7 cut(s)	5, 73, 177, 338, 471, 790, 992
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	4 cut(s)	35, 44, 523, 1014
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	3 cut(s)	267, 530, 923
GluI	GCNGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	861
HaeIII	GGCC	3 cut(s)	84, 217, 1023
HapII	CCGG	1 cut(s)	1024
Hin1II	CATG	7 cut(s)	9, 77, 181, 342, 475, 794, 996
HincII	GTYRAC	3 cut(s)	167, 418, 633
HindII	GTYRAC	3 cut(s)	167, 418, 633
HinfI	GANTC	2 cut(s)	189, 662
HpaII	CCGG	1 cut(s)	1024
HphI	GGTGA	2 cut(s)	567, 986
Hpy166II	GTNNAC	6 cut(s)	142, 167, 418, 514, 633, 889
Hpy188I	TCNGA	4 cut(s)	385, 556, 772, 862
Hpy188III	TCNNGA	3 cut(s)	45, 193, 923
Hpy8I	GTNNAC	6 cut(s)	142, 167, 418, 514, 633, 889
HpyAV	CCTTC	2 cut(s)	121, 767
HpyCH4IV	ACGT	2 cut(s)	120, 799
HpyCH4V	TGCA	3 cut(s)	233, 407, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	557
HpyF3I	CTNAG	6 cut(s)	18, 517, 555, 859, 869, 902
HpySE526I	ACGT	2 cut(s)	120, 799
Hsp92II	CATG	7 cut(s)	9, 77, 181, 342, 475, 794, 996
Kzo9I	GATC	4 cut(s)	865, 895, 919, 1051
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	3 cut(s)	560, 700, 967
MaeI	CTAG	3 cut(s)	267, 530, 923
MaeII	ACGT	2 cut(s)	120, 799
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	4 cut(s)	867, 897, 921, 1053
MboI	GATC	4 cut(s)	865, 895, 919, 1051
MboII	GAAGA	5 cut(s)	136, 506, 713, 1040, 1106
MfeI	CAATTG	2 cut(s)	285, 1056
MflI	RGATCY	3 cut(s)	865, 919, 1051
MluCI	AATT	8 cut(s)	66, 285, 569, 703, 717, 737, 773, 1056
MmeI	TCCRAC	2 cut(s)	964, 1066
MseI	TTAA	7 cut(s)	63, 330, 362, 434, 476, 849, 1067
MspA1I	CMGCKG	1 cut(s)	901
MspI	CCGG	1 cut(s)	1024
MspR9I	CCNGG	2 cut(s)	840, 1025
MunI	CAATTG	2 cut(s)	285, 1056
Mva1269I	GAATGC	1 cut(s)	811
MvaI	CCWGG	1 cut(s)	840
MwoI	GCNNNNNNNGC	1 cut(s)	557
NciI	CCSGG	1 cut(s)	1025
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	4 cut(s)	865, 895, 919, 1051
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	7 cut(s)	9, 77, 181, 342, 475, 794, 996
NlaIV	GGNNCC	3 cut(s)	368, 1022, 1053
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	688
PceI	AGGCCT	1 cut(s)	84
PciI	ACATGT	1 cut(s)	5
PctI	GAATGC	1 cut(s)	811
PfeI	GAWTC	2 cut(s)	189, 662
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	247
PmaCI	CACGTG	2 cut(s)	121, 800
PmlI	CACGTG	2 cut(s)	121, 800
Ppu21I	YACGTR	2 cut(s)	121, 800
PscI	ACATGT	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	838
PspCI	CACGTG	2 cut(s)	121, 800
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	3 cut(s)	368, 1022, 1053
PspPI	GGNCC	5 cut(s)	215, 396, 564, 652, 1021
PsuI	RGATCY	3 cut(s)	865, 919, 1051
RsaI	GTAC	1 cut(s)	935
RsaNI	GTAC	1 cut(s)	934
SaqAI	TTAA	7 cut(s)	63, 330, 362, 434, 476, 849, 1067
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	4 cut(s)	865, 895, 919, 1051
Sau96I	GGNCC	5 cut(s)	215, 396, 564, 652, 1021
ScaI	AGTACT	1 cut(s)	935
ScrFI	CCNGG	2 cut(s)	840, 1025
SfaNI	GCATC	3 cut(s)	560, 700, 967
SfuI	TTCGAA	1 cut(s)	688
SinI	GGWCC	3 cut(s)	396, 564, 652
Sse9I	AATT	8 cut(s)	66, 285, 569, 703, 717, 737, 773, 1056
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	2 cut(s)	899, 1132
SspMI	CTAG	3 cut(s)	267, 530, 923
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	838, 1023
StyI	CCWWGG	1 cut(s)	1127
TaiI	ACGT	2 cut(s)	123, 802
TaqI	TCGA	2 cut(s)	688, 894
TasI	AATT	8 cut(s)	66, 285, 569, 703, 717, 737, 773, 1056
TatI	WGTACW	1 cut(s)	933
TfiI	GAWTC	2 cut(s)	189, 662
Tru1I	TTAA	7 cut(s)	63, 330, 362, 434, 476, 849, 1067
Tru9I	TTAA	7 cut(s)	63, 330, 362, 434, 476, 849, 1067
TscAI	CASTG	3 cut(s)	22, 358, 625
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	129, 460, 507, 779
TspRI	CASTG	3 cut(s)	22, 358, 625
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	3 cut(s)	396, 564, 652
XapI	RAATTY	2 cut(s)	66, 569
XbaI	TCTAGA	1 cut(s)	922
XceI	RCATGY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XspI	CTAG	3 cut(s)	267, 530, 923
ZrmI	AGTACT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.