Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008672

Physical Location & Seq

Genomic Coordinates Forward (+)

16919580 .. 16921362

Gene Structure 1783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAAGAGATAAATGAGAATTTTATGTCAAGTAGAAAAACTAATGAAAATGTGCAAAGTGTAAAGCCAGCAATGTTCTTGGACAAGGCATCTGAGGCCTGGACCAGATTCTCACTAAACTCAATGGAGTTAAAAAGGTTGATGGCTTATGCTGGAAGCAGTGCAAACTTGTTGACCAAACTGATTTCGGAGGATCATAATGATAATTATAGATGGGAGTGCCTTTTTCGAACTCCTTTGAACAATTACGATGCGGTTATTCTTGTCCACAGAGAAAAATTACCTTACCCCCAACATCTTCTCTTCCCATCCGAATTAAATCAAGGCGCAGGGGTACATGTGGCACGTGGGAATGCGAGCAAGGTTTTCCACCCATTTCTGTTGCCTGGAGACATGAAGGGAAACTCGGAGGCACTACGAAATAAGCGGTTGGTAGACTTTGATCCACTGAGGTGCTTTGTTGGGGATCTAGAGAAAGAGTACCCCAACACCTTCAAGCTGTGGTATGATTCTCTGGGTGGTGATGCTGTTGGCATAACGTGGGGGAGATATGGTTCAAAGAAGCGAGGGCGGGAAGGAGAAGCAGAGGAAGTAAAAGATCCAACTGATTTATTAAACGACACCGGTAAAGTGGGAACAGGGTTTGTGAGGGGGGTTTATCTTCCCAAAGCCCCAAGGCTCACGAGTTGGCTCTGTTTATACTCTAAAATGCTCAAAGCTTCACGGGCGACAACACTTTTCTCCGTGAGCTACTGCTGCTTTTCGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Nrap Nrap_D2 Nrap_D3 Nrap_D4 Nrap_D5 Nrap_D6

Protein Analysis

257

Amino Acids

29.04

Weight (kDa)

8.98

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63810 AT1G63810
fragaria_vesca	FvH4_1g13250 FvH4_1g13250
malus_domestica	MD02G1146900.v1.1 MD15G1261100.v1.1
prunus_persica	Prupe.7G155300_v2.0.a1 Prupe.7G155300_v2.0.a1 Prupe.7G155300_v2.0.a1
pyrus_communis	pycom02g11620 pycom15g22840 pycom15g22850
rosa_chinensis	RchiOBHm_Chr2g0101431 RchiOBHm_Chr2g0101471
rosa_laevigata	RLG00000017080
rosa_multiflora	Rmu_sc0006153.1_g000056
rosa_roxburghii	Rroxscaffold_2G00141310
rosa_rugosa	Rorug02G0098300
rosa_samantha	Rh2AG147000 Rh2BG152300 Rh2CG152800 Rh2DG152400
rosa_wichuraiana	Rw2G011460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	3 cut(s)	254, 427, 571
AclWI	GGATC	4 cut(s)	201, 437, 474, 593
AcsI	RAATTY	1 cut(s)	19
AcvI	CACGTG	1 cut(s)	347
AfaI	GTAC	2 cut(s)	336, 482
AflIII	ACRYGT	1 cut(s)	337
AgeI	ACCGGT	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	241, 496, 558
AjnI	CCWGG	2 cut(s)	98, 385
AleI	CACNNNNGTG	1 cut(s)	451
AloI	GAACNNNNNNTCC	2 cut(s)	538, 570
AluBI	AGCT	3 cut(s)	499, 719, 750
AluI	AGCT	3 cut(s)	499, 719, 750
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	4 cut(s)	201, 437, 474, 593
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	756
ApoI	RAATTY	1 cut(s)	19
AsiGI	ACCGGT	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	533
AsuII	TTCGAA	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	682
BbrPI	CACGTG	1 cut(s)	347
BbvI	GCAGC	1 cut(s)	743
BccI	CCATC	3 cut(s)	136, 207, 316
BciT130I	CCWGG	2 cut(s)	100, 387
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	470
BisI	GCNGC	1 cut(s)	757
BlsI	GCNGC	1 cut(s)	758
Bme1390I	CCNGG	2 cut(s)	100, 387
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmrFI	CCNGG	2 cut(s)	100, 387
BmsI	GCATC	3 cut(s)	98, 241, 514
BpmI	CTGGAG	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	229
BsaAI	YACGTR	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	674
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bse118I	RCCGGY	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	100, 387
BseDI	CCNNGG	1 cut(s)	674
BseGI	GGATG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	84, 440
BseXI	GCAGC	1 cut(s)	743
BshFI	GGCC	1 cut(s)	98
BshTI	ACCGGT	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	624
BsmAI	GTCTC	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	98
Bsp119I	TTCGAA	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	193, 442, 466, 598
BspACI	CCGC	3 cut(s)	254, 427, 571
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	85, 441
BspPI	GGATC	4 cut(s)	201, 437, 474, 593
BspT104I	TTCGAA	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	623
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	1 cut(s)	674
BssMI	GATC	4 cut(s)	193, 442, 466, 598
BssSI	CACGAG	1 cut(s)	682
BssT1I	CCWWGG	1 cut(s)	674
Bst2BI	CACGAG	1 cut(s)	682
Bst2UI	CCWGG	2 cut(s)	100, 387
Bst6I	CTCTTC	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	69, 358
BstDEI	CTNAG	2 cut(s)	93, 449
BstF5I	GGATG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	196, 445, 469, 601
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	4 cut(s)	193, 442, 466, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 725, 756
BstNI	CCWGG	2 cut(s)	100, 387
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	98, 385
BstV1I	GCAGC	1 cut(s)	743
BstX2I	RGATCY	2 cut(s)	466, 598
BstYI	RGATCY	2 cut(s)	466, 598
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	308
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	166, 446
Cac8I	GCNNGC	2 cut(s)	69, 358
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	335, 481
CspAI	ACCGGT	1 cut(s)	623
CviAII	CATG	3 cut(s)	338, 394, 768
CviJI	RGCY	9 cut(s)	67, 98, 146, 499, 671, 679, 691, 719, 750
CviKI_1	RGCY	9 cut(s)	67, 98, 146, 499, 671, 679, 691, 719, 750
CviQI	GTAC	2 cut(s)	335, 481
DdeI	CTNAG	2 cut(s)	93, 449
DpnI	GATC	4 cut(s)	195, 444, 468, 600
DpnII	GATC	4 cut(s)	193, 442, 466, 598
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	674
Eco147I	AGGCCT	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	98, 385
EcoT14I	CCWWGG	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	674
FaeI	CATG	3 cut(s)	341, 397, 771
FatI	CATG	3 cut(s)	337, 393, 767
FauI	CCCGC	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	757
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	757
FspBI	CTAG	1 cut(s)	470
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	757
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	624
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	341, 397, 771
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	2 cut(s)	108, 509
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	3 cut(s)	174, 268, 436
Hpy188I	TCNGA	4 cut(s)	94, 190, 313, 409
Hpy188III	TCNNGA	2 cut(s)	470, 682
Hpy8I	GTNNAC	3 cut(s)	174, 268, 436
HpyAV	CCTTC	3 cut(s)	391, 502, 569
HpyCH4IV	ACGT	2 cut(s)	346, 539
HpyCH4V	TGCA	2 cut(s)	55, 164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 725, 756
HpyF3I	CTNAG	2 cut(s)	93, 449
HpySE526I	ACGT	2 cut(s)	346, 539
Hsp92II	CATG	3 cut(s)	341, 397, 771
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	193, 442, 466, 598
Lsp1109I	GCAGC	1 cut(s)	743
LweI	GCATC	3 cut(s)	98, 241, 514
MaeI	CTAG	1 cut(s)	470
MaeII	ACGT	2 cut(s)	346, 539
MalI	GATC	4 cut(s)	195, 444, 468, 600
MboI	GATC	4 cut(s)	193, 442, 466, 598
MboII	GAAGA	3 cut(s)	290, 295, 653
MflI	RGATCY	2 cut(s)	466, 598
MluCI	AATT	5 cut(s)	19, 205, 244, 278, 314
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	7 cut(s)	88, 184, 403, 444, 560, 580, 642
MseI	TTAA	3 cut(s)	131, 317, 614
MslI	CAYNNNNRTG	1 cut(s)	451
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	2 cut(s)	100, 387
Mva1269I	GAATGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	100, 387
MwoI	GCNNNNNNNGC	3 cut(s)	95, 725, 756
NdeII	GATC	4 cut(s)	193, 442, 466, 598
NlaIII	CATG	3 cut(s)	341, 397, 771
NspI	RCATGY	1 cut(s)	341
NspV	TTCGAA	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	98
PciI	ACATGT	1 cut(s)	337
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	108, 509
PinAI	ACCGGT	1 cut(s)	623
PkrI	GCNGC	1 cut(s)	758
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	347
PscI	ACATGT	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	98, 385
PspCI	CACGTG	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	98, 385
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	466, 598
RsaI	GTAC	2 cut(s)	336, 482
RsaNI	GTAC	2 cut(s)	335, 481
RseI	CAYNNNNRTG	1 cut(s)	451
SaqAI	TTAA	3 cut(s)	131, 317, 614
SatI	GCNGC	1 cut(s)	757
Sau3AI	GATC	4 cut(s)	193, 442, 466, 598
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	100, 387
SfaNI	GCATC	3 cut(s)	98, 241, 514
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	451
Sse9I	AATT	5 cut(s)	19, 205, 244, 278, 314
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	3 cut(s)	254, 427, 571
SspMI	CTAG	1 cut(s)	470
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	98, 385
StyI	CCWWGG	1 cut(s)	674
TaiI	ACGT	2 cut(s)	349, 542
TaqI	TCGA	2 cut(s)	229, 764
TasI	AATT	5 cut(s)	19, 205, 244, 278, 314
TfiI	GAWTC	2 cut(s)	108, 509
Tru1I	TTAA	3 cut(s)	131, 317, 614
Tru9I	TTAA	3 cut(s)	131, 317, 614
TscAI	CASTG	2 cut(s)	166, 453
TseI	GCWGC	1 cut(s)	756
TspDTI	ATGAA	3 cut(s)	17, 60, 410
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	2 cut(s)	166, 453
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	19
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.