pycom15g25110

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
19476688 .. 19479209
2522 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1101 bp
ATGGCATCAACAATGTCTCTCGCCGTACTCACCATCCTCTTCCTCTCCTTTACCCTCTCATACTCCTCCCCGATCGTCGACTCTCAGAGCGAGGCCGACGTCAGAGCCATCTACCAAGAGTGGCTCGTGAAGCACCAAAAGACGTACAACGGCATCGGGGAGGAGGAGAGGAGGTTCGAGATCTTCAAGGACAACTTGAAGTTCATCGACGAGCATAATGCACAGGACCGTCCGTACAAGGTCGGTCTGAACGCTTTTGCTGACCTGACGAACCAAGAGTACCGTGCCAAGTTTTTGGGCACCAGGAGTGACCCTAAGCGCAGGGTCATGAAAGCCAAGAAGCCGAGCCTGAGGTACGCTTTTCGCGCCGGTGAAACGTTGCCGGAATCTGTGGATTGGAGAGTCAAGGGTGCCGTCAATCCCATAAAAAATCAAGGAAGTTGCGGAAGTTGCTGGGCTTTCTCGACAGTGGCCGCGGTGGAGGGCATAAACCAAATAGTCACAGGAGAGTTGGTGTCTCTCTCAGAGCAAGAGCTTGTAGACTGCGACAGATCCTACAACGCCGGCTGCAATGGTGGTCTCATGGACTACGCTTTCGAGTTCATCATCCAAAACGGCGGTATGGACACTGAATCGGACTACCCTTACAAAGCATATGACCAAAAATGCAACGTTGCACTGGAGAACAATAAGGTTGTTAGCATTGATGGGTACGAAGATGTTCCGTCCTATGACGAGAACGCTTTGAAGAAAGCCGTTGCACACCAACCCGTTAGCGTGGCCATTGAAGCCGGCGGCAGGGCCCTACAACTCTACGAGTCGGGTGTTTTCACTGGTGAGTGCGGGTCAGCATTGGACCATGGTGTCGTTGCTGTTGGGTATGGCACCGAGAACGGTACAGACTATTGGTTGGTGAGGAACTCGTGGGGCACCAACTGGGGAGAGAGTGGATATTTTAAGATAGAGAGAAATGTTGCAAGCACATACACAGGCAAGTGTGGAATTGCAATGGAGGCTTCTTACCCTACAAAGAAGGACCAAAACCACCCATCAGGCTCTTTCTTTGCTGAGGAAGACATCAAGATGGTCACAAGTGCATGA

Protein Analysis

367

Amino Acids

40.53

Weight (kDa)

5.05

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 38 - 94 2.6e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 127 - 343 2e-86 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011728)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 863
AatII GACGTC 1 cut(s) 102
AccB1I GGYRCC 4 cut(s) 299, 410, 884, 929
AccI GTMKAC 2 cut(s) 78, 540
AccII CGCG 2 cut(s) 366, 476
AciI CCGC 6 cut(s) 444, 474, 476, 618, 795, 843
AclI AACGTT 2 cut(s) 377, 672
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 2 cut(s) 471, 780
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 7 cut(s) 27, 146, 236, 281, 356, 713, 898
AfiI CCNNNNNNNGG 1 cut(s) 798
AgsI TTSAA 4 cut(s) 187, 199, 748, 788
AjnI CCWGG 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 1 cut(s) 535
AluI AGCT 1 cut(s) 535
Alw26I GTCTC 3 cut(s) 21, 522, 584
AlwI GGATC 1 cut(s) 546
AoxI GGCC 4 cut(s) 93, 471, 780, 801
ApaI GGGCCC 1 cut(s) 805
ApeKI GCWGC 1 cut(s) 567
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 2 cut(s) 321, 368
AspS9I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
AsuHPI GGTGA 4 cut(s) 22, 383, 848, 925
AvaII GGWCC 3 cut(s) 226, 856, 1036
AxyI CCTNAGG 1 cut(s) 350
BaeGI GKGCMC 3 cut(s) 302, 805, 932
BalI TGGCCA 1 cut(s) 782
BanI GGYRCC 4 cut(s) 299, 410, 884, 929
BanII GRGCYC 1 cut(s) 805
BauI CACGAG 2 cut(s) 125, 922
BbsI GAAGAC 1 cut(s) 1080
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 1 cut(s) 554
BccI CCATC 5 cut(s) 41, 116, 701, 1057, 1078
BceAI ACGGC 5 cut(s) 8, 166, 398, 631, 740
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 21, 522, 584
BglII AGATCT 1 cut(s) 180
BisI GCNGC 3 cut(s) 474, 568, 796
BlsI GCNGC 3 cut(s) 475, 569, 797
Bme1390I CCNGG 1 cut(s) 304
Bme18I GGWCC 3 cut(s) 226, 856, 1036
BmgT120I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
BmiI GGNNCC 5 cut(s) 301, 412, 803, 886, 931
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 2 cut(s) 14, 162
BmuI ACTGGG 1 cut(s) 946
BpiI GAAGAC 1 cut(s) 1080
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 2 cut(s) 315, 1068
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 474, 859
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse118I RCCGGY 3 cut(s) 368, 563, 791
Bse1I ACTGG 3 cut(s) 684, 838, 941
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 2 cut(s) 577, 1014
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 474, 859
BseGI GGATG 2 cut(s) 33, 606
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMI GCAATG 2 cut(s) 577, 1014
BseMII CTCAG 4 cut(s) 98, 341, 537, 1059
BseNI ACTGG 3 cut(s) 684, 838, 941
BseRI GAGGAG 4 cut(s) 55, 176, 179, 184
BseSI GKGCMC 3 cut(s) 302, 805, 932
BseXI GCAGC 1 cut(s) 554
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 366, 476
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 4 cut(s) 95, 473, 782, 803
BshNI GGYRCC 4 cut(s) 299, 410, 884, 929
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 4 cut(s) 369, 383, 564, 792
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 3 cut(s) 21, 522, 584
BsnI GGCC 4 cut(s) 95, 473, 782, 803
Bso31I GGTCTC 1 cut(s) 584
Bsp120I GGGCCC 1 cut(s) 801
Bsp1286I GDGCHC 3 cut(s) 302, 805, 932
Bsp143I GATC 3 cut(s) 72, 180, 551
Bsp19I CCATGG 1 cut(s) 859
BspACI CCGC 6 cut(s) 444, 474, 476, 618, 795, 843
BspANI GGCC 4 cut(s) 95, 473, 782, 803
BspCNI CTCAG 4 cut(s) 97, 342, 536, 1060
BspFNI CGCG 2 cut(s) 366, 476
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 5 cut(s) 301, 412, 803, 886, 931
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 4 cut(s) 299, 410, 884, 929
BspTNI GGTCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 577, 1014
BsrFI RCCGGY 3 cut(s) 368, 563, 791
BsrI ACTGG 3 cut(s) 684, 838, 941
BssAI RCCGGY 3 cut(s) 368, 563, 791
BssECI CCNNGG 2 cut(s) 474, 859
BssMI GATC 3 cut(s) 72, 180, 551
BssNI GRCGYC 1 cut(s) 99
BssSI CACGAG 2 cut(s) 125, 922
BssT1I CCWWGG 1 cut(s) 859
Bst2BI CACGAG 2 cut(s) 125, 922
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 4 cut(s) 230, 284, 469, 896
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 99
BstC8I GCNNGC 3 cut(s) 565, 793, 979
BstDEI CTNAG 5 cut(s) 84, 315, 350, 523, 1068
BstDSI CCRYGG 2 cut(s) 474, 859
BstF5I GGATG 2 cut(s) 33, 606
BstFNI CGCG 2 cut(s) 366, 476
BstHHI GCGC 2 cut(s) 321, 368
BstKTI GATC 3 cut(s) 75, 183, 554
BstMAI GTCTC 3 cut(s) 21, 522, 584
BstMBI GATC 3 cut(s) 72, 180, 551
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 5 cut(s) 130, 365, 450, 788, 1013
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstSLI GKGCMC 3 cut(s) 302, 805, 932
BstUI CGCG 2 cut(s) 366, 476
BstV1I GCAGC 1 cut(s) 554
BstV2I GAAGAC 1 cut(s) 1080
BstX2I RGATCY 2 cut(s) 180, 551
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 2 cut(s) 180, 551
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 4 cut(s) 95, 473, 782, 803
BtgI CCRYGG 2 cut(s) 474, 859
BtsCI GGATG 2 cut(s) 33, 606
BtsIMutI CAGTG 4 cut(s) 474, 627, 677, 831
Cac8I GCNNGC 3 cut(s) 565, 793, 979
CciI TCATGA 1 cut(s) 327
CfoI GCGC 2 cut(s) 321, 368
Cfr10I RCCGGY 3 cut(s) 368, 563, 791
Cfr13I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
Cfr42I CCGCGG 1 cut(s) 477
Csp6I GTAC 7 cut(s) 26, 145, 235, 280, 355, 712, 897
CviAII CATG 4 cut(s) 328, 583, 860, 1098
CviQI GTAC 7 cut(s) 26, 145, 235, 280, 355, 712, 897
DdeI CTNAG 5 cut(s) 84, 315, 350, 523, 1068
DpnI GATC 3 cut(s) 74, 182, 553
DpnII GATC 3 cut(s) 72, 180, 551
DrdI GACNNNNNNGTC 1 cut(s) 863
DseDI GACNNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 2 cut(s) 471, 780
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 859
Eco24I GRGCYC 1 cut(s) 805
Eco31I GGTCTC 1 cut(s) 584
Eco47I GGWCC 3 cut(s) 226, 856, 1036
Eco81I CCTNAGG 1 cut(s) 350
EcoO109I RGGNCCY 2 cut(s) 801, 802
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 859
FaeI CATG 4 cut(s) 331, 586, 863, 1101
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FatI CATG 4 cut(s) 327, 582, 859, 1097
FauI CCCGC 1 cut(s) 836
FauNDI CATATG 1 cut(s) 655
FblI GTMKAC 2 cut(s) 78, 540
Fnu4HI GCNGC 3 cut(s) 474, 568, 796
FokI GGATG 2 cut(s) 20, 593
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 3 cut(s) 474, 568, 796
GlaI GCGC 2 cut(s) 320, 367
GluI GCNGC 3 cut(s) 474, 568, 796
GsaI CCCAGC 1 cut(s) 457
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 4 cut(s) 95, 473, 782, 803
HapII CCGG 4 cut(s) 369, 383, 564, 792
HhaI GCGC 2 cut(s) 321, 368
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 4 cut(s) 331, 586, 863, 1101
Hin6I GCGC 2 cut(s) 319, 366
HinP1I GCGC 2 cut(s) 319, 366
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 5 cut(s) 80, 386, 402, 632, 818
HpaII CCGG 4 cut(s) 369, 383, 564, 792
HphI GGTGA 4 cut(s) 22, 383, 848, 925
Hpy166II GTNNAC 2 cut(s) 79, 541
Hpy188I TCNGA 5 cut(s) 87, 104, 249, 526, 637
Hpy188III TCNNGA 5 cut(s) 127, 178, 328, 463, 1081
Hpy8I GTNNAC 2 cut(s) 79, 541
Hpy99I CGWCG 3 cut(s) 80, 101, 212
HpyAV CCTTC 1 cut(s) 1027
HpyCH4III ACNGT 4 cut(s) 230, 284, 469, 896
HpyCH4IV ACGT 4 cut(s) 99, 143, 377, 672
HpyCH4V TGCA 8 cut(s) 221, 570, 669, 677, 761, 977, 1007, 1097
HpyF10VI GCNNNNNNNGC 5 cut(s) 130, 365, 450, 788, 1013
HpyF3I CTNAG 5 cut(s) 84, 315, 350, 523, 1068
HpySE526I ACGT 4 cut(s) 99, 143, 377, 672
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 4 cut(s) 331, 586, 863, 1101
HspAI GCGC 2 cut(s) 319, 366
KroI GCCGGC 2 cut(s) 563, 791
KroNI GCCGGC 2 cut(s) 565, 793
KspI CCGCGG 1 cut(s) 477
Kzo9I GATC 3 cut(s) 72, 180, 551
Lsp1109I GCAGC 1 cut(s) 554
LweI GCATC 2 cut(s) 14, 162
MaeII ACGT 4 cut(s) 99, 143, 377, 672
MaeIII GTNAC 3 cut(s) 308, 499, 1087
MalI GATC 3 cut(s) 74, 182, 553
MboI GATC 3 cut(s) 72, 180, 551
MboII GAAGA 5 cut(s) 31, 175, 728, 760, 1085
MflI RGATCY 2 cut(s) 180, 551
MhlI GDGCHC 3 cut(s) 302, 805, 932
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 1 cut(s) 1002
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 3 cut(s) 74, 411, 827
Mox20I TGGCCA 1 cut(s) 782
MroNI GCCGGC 2 cut(s) 563, 791
MroXI GAANNNNTTC 1 cut(s) 720
MscI TGGCCA 1 cut(s) 782
MseI TTAA 1 cut(s) 957
MslI CAYNNNNRTG 1 cut(s) 1082
Msp20I TGGCCA 1 cut(s) 782
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 4 cut(s) 369, 383, 564, 792
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 2 cut(s) 366, 476
MwoI GCNNNNNNNGC 5 cut(s) 130, 365, 450, 788, 1013
NaeI GCCGGC 2 cut(s) 565, 793
NcoI CCATGG 1 cut(s) 859
NdeI CATATG 1 cut(s) 655
NdeII GATC 3 cut(s) 72, 180, 551
NgoMIV GCCGGC 2 cut(s) 563, 791
NlaIII CATG 4 cut(s) 331, 586, 863, 1101
NlaIV GGNNCC 5 cut(s) 301, 412, 803, 886, 931
NmeAIII GCCGAG 1 cut(s) 369
NmuCI GTSAC 3 cut(s) 308, 499, 1087
PagI TCATGA 1 cut(s) 327
PdiI GCCGGC 2 cut(s) 565, 793
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 2 cut(s) 386, 632
PkrI GCNGC 3 cut(s) 475, 569, 797
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 3 cut(s) 74, 410, 826
PpsI GAGTC 3 cut(s) 74, 410, 826
Psp1406I AACGTT 2 cut(s) 377, 672
Psp6I CCWGG 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 453
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 5 cut(s) 301, 412, 803, 886, 931
PspOMI GGGCCC 1 cut(s) 801
PspPI GGNCC 5 cut(s) 226, 801, 802, 856, 1036
PsrI GAACNNNNNNTAC 2 cut(s) 263, 295
PsuI RGATCY 2 cut(s) 180, 551
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 7 cut(s) 27, 146, 236, 281, 356, 713, 898
RsaNI GTAC 7 cut(s) 26, 145, 235, 280, 355, 712, 897
RseI CAYNNNNRTG 1 cut(s) 1082
SacII CCGCGG 1 cut(s) 477
SalI GTCGAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 957
SatI GCNGC 3 cut(s) 474, 568, 796
Sau3AI GATC 3 cut(s) 72, 180, 551
Sau96I GGNCC 5 cut(s) 226, 801, 802, 856, 1036
SchI GAGTC 3 cut(s) 74, 411, 827
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 3 cut(s) 302, 805, 932
SfaNI GCATC 2 cut(s) 14, 162
Sfr303I CCGCGG 1 cut(s) 477
SgrAI CRCCGGYG 1 cut(s) 368
SgrBI CCGCGG 1 cut(s) 477
SinI GGWCC 3 cut(s) 226, 856, 1036
SmiMI CAYNNNNRTG 1 cut(s) 1082
Sse9I AATT 1 cut(s) 1002
SsiI CCGC 6 cut(s) 444, 474, 476, 618, 795, 843
StyD4I CCNGG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 859
TaaI ACNGT 4 cut(s) 230, 284, 469, 896
TaiI ACGT 4 cut(s) 102, 146, 380, 675
TaqI TCGA 5 cut(s) 78, 177, 207, 464, 597
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 1002
TauI GCSGC 2 cut(s) 476, 798
TfiI GAWTC 2 cut(s) 386, 632
Tru1I TTAA 1 cut(s) 957
Tru9I TTAA 1 cut(s) 957
TscAI CASTG 4 cut(s) 474, 634, 684, 838
TseFI GTSAC 3 cut(s) 308, 499, 1087
TseI GCWGC 1 cut(s) 567
Tsp45I GTSAC 3 cut(s) 308, 499, 1087
TspDTI ATGAA 3 cut(s) 193, 344, 592
TspGWI ACGGA 2 cut(s) 222, 714
TspRI CASTG 4 cut(s) 474, 634, 684, 838
VpaK11BI GGWCC 3 cut(s) 226, 856, 1036
XmiI GTMKAC 2 cut(s) 78, 540
XmnI GAANNNNTTC 1 cut(s) 720
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.