pycom15g25710

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008952
Physical Location & Seq
Forward (+)
20292153 .. 20294359
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1131 bp
ATGAATGCTTTCTTCAATCCAACTGGCGCATATCTCATGACTCATGCGCCCTCTTCTTTTTATATATTCCTCCACCCTTGGCAATCAAAATCTCAGTCTTCTTCTTCTCTCTCTTCCTATCTGTGTTCTGAAAAAAATCAAATGTTTGGTCGCATGGGTCGCTTCAATCTTTTACTAGTTTGGTCGCTTCGCCTCAGTTTGTGTCTACTTTTTTGTCCCACATCGGCGCAGCTCAAAACAAATTACTATGCCAACATCTGCCCCGACGTAGAAAAAATTGTTAAAAATGCTGTCACTAATAAATTCCAGCGAACATTCGTCACTGTTCCGGCAACACTCCGTCTCTTTTTCCACGATTGCTTTGTCCAGGGATGTGATGCTTCCGTTATAGTTGCTTCCACTGCAAACAACAAGGCAGAAAAGGACCATCCTGATAATCTATCATTAGCCGGAGATGGGTTTGATACGGTGATCAAAGCCAAAGCAGCCGTTGATGCAGTTCCTCAATGCAAAAACAAAGTTTCATGCGCTGATATTCTTGCCTTGGCCACCAGAGATGTTATTGGTTTGGTTGGTGGACCTTCATATTCGGTTGAGTTGGGAAGATTGGATGGTCTAACGTCAACTTCTACAAGTGTAGATGGGAAGCTGCCTAAGCCAACATTCAATTTGAACCAGCTCACTTCCATGTTTGCTTCCAATGGGTTGTCCCAGGCTGACATGGTTGCTCTTTCAGGGGCACACACCCTAGGGTTCGCTCATTGCAACCAGTTCTCAAATCGGATTTACAGTAATCCAGTGGACCCCACGCTGAACGAAACGTATGCAACGCAGCTCCAACAAATGTGTCCCAAAAATGTGGACCCCGACATAGCCATCAACATGGACCCAACCACGCCCAGGGAGTTTGACAATGCATACTTTGAGAATCTTATAGAAGGGAAGGGGTTATTTACCTCGGACCAGGTCCTTTTTACGGACAGCAGGTCCCAGCCCACGGTAAGAACATGGGCCAAAGATAAGACGGCTTTTAACCAGGCCTTTATTAACGCTATGACCAAGCTGGGTCGGGTCGGAATCAAGACCGGCCATAATGGCAATATTCGTCGTGATTGCGGTATTTTAAATTGA

Protein Analysis

377

Amino Acids

41.24

Weight (kDa)

8.42

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 94 - 340 1.5e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49960 AT4G37520 AT4G37520 AT4G37530 AT4G37530 AT5G67400
fragaria_vesca FvH4_1g17340
malus_domestica MD00G1112500.v1.1 MD15G1294200.v1.1
prunus_persica Prupe.6G223400_v2.0.a1
pyrus_communis pycom02g14820 pycom15g25710
rosa_chinensis RchiOBHm_Chr2g0107511
rosa_laevigata RLG00000017587
rosa_multiflora Rmu_sc0022315.1_g000001
rosa_roxburghii Rroxscaffold_2G00136230
rosa_rugosa Rorug02G0144500
rosa_samantha Rh2AG194400 Rh2BG207100 Rh2CG199600 Rh2DG201700
rosa_wichuraiana Rw2G015400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 975
AccI GTMKAC 1 cut(s) 205
AciI CCGC 1 cut(s) 1116
AcoI YGGCCR 2 cut(s) 546, 1087
AcsI RAATTY 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
AgsI TTSAA 4 cut(s) 16, 166, 667, 673
AhdI GACNNNNNGTC 1 cut(s) 985
AhlI ACTAGT 1 cut(s) 175
AjnI CCWGG 5 cut(s) 366, 711, 899, 963, 1035
AluBI AGCT 5 cut(s) 232, 649, 679, 835, 1063
AluI AGCT 5 cut(s) 232, 649, 679, 835, 1063
Alw26I GTCTC 1 cut(s) 347
AoxI GGCC 4 cut(s) 546, 1011, 1038, 1087
ApeKI GCWGC 4 cut(s) 229, 485, 649, 832
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 133, 165
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 748
AspLEI GCGC 4 cut(s) 29, 49, 229, 530
AspS9I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
AvrII CCTAGG 1 cut(s) 748
BaeGI GKGCMC 1 cut(s) 742
BalI TGGCCA 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 241, 497, 636, 844
BccI CCATC 5 cut(s) 435, 449, 605, 635, 884
BceAI ACGGC 2 cut(s) 473, 1041
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 5 cut(s) 368, 713, 901, 965, 1037
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 175
BfaI CTAG 2 cut(s) 176, 749
BfuAI ACCTGC 1 cut(s) 975
BglI GCCNNNNNGGC 1 cut(s) 1095
BisI GCNGC 4 cut(s) 230, 486, 650, 833
BlnI CCTAGG 1 cut(s) 748
BlsI GCNGC 4 cut(s) 231, 487, 651, 834
Bme1390I CCNGG 5 cut(s) 368, 713, 901, 965, 1037
Bme18I GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
BmeRI GACNNNNNGTC 1 cut(s) 985
BmgT120I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
BmiI GGNNCC 4 cut(s) 804, 864, 888, 989
BmrFI CCNGG 5 cut(s) 368, 713, 901, 965, 1037
BmsI GCATC 2 cut(s) 367, 484
BpiI GAAGAC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 654
BsaJI CCNNGG 9 cut(s) 77, 367, 543, 711, 748, 899, 900, 957, 996
Bsc4I CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
Bse118I RCCGGY 1 cut(s) 1085
Bse1I ACTGG 3 cut(s) 28, 769, 797
Bse3DI GCAATG 1 cut(s) 760
BseBI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
BseDI CCNNGG 9 cut(s) 77, 367, 543, 711, 748, 899, 900, 957, 996
BseGI GGATG 3 cut(s) 377, 427, 616
BseLI CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
BseMI GCAATG 1 cut(s) 760
BseMII CTCAG 2 cut(s) 107, 208
BseNI ACTGG 3 cut(s) 28, 769, 797
BseSI GKGCMC 1 cut(s) 742
BseXI GCAGC 4 cut(s) 241, 497, 636, 844
BseYI CCCAGC 2 cut(s) 990, 1063
BshFI GGCC 4 cut(s) 548, 1013, 1040, 1089
BsiSI CCGG 3 cut(s) 329, 450, 1086
BslFI GGGAC 4 cut(s) 201, 694, 834, 973
BslI CCNNNNNNNGG 4 cut(s) 456, 900, 976, 997
BsmAI GTCTC 1 cut(s) 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 4 cut(s) 201, 694, 834, 973
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 548, 1013, 1040, 1089
Bsp1286I GDGCHC 1 cut(s) 742
Bsp143I GATC 1 cut(s) 471
BspACI CCGC 1 cut(s) 1116
BspANI GGCC 4 cut(s) 548, 1013, 1040, 1089
BspCNI CTCAG 2 cut(s) 106, 207
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 804, 864, 888, 989
BspMI ACCTGC 1 cut(s) 975
BsrDI GCAATG 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 1085
BsrI ACTGG 3 cut(s) 28, 769, 797
BssAI RCCGGY 1 cut(s) 1085
BssECI CCNNGG 9 cut(s) 77, 367, 543, 711, 748, 899, 900, 957, 996
BssMI GATC 1 cut(s) 471
BssT1I CCWWGG 3 cut(s) 77, 543, 748
Bst2UI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
Bst4CI ACNGT 4 cut(s) 325, 469, 791, 1000
Bst6I CTCTTC 2 cut(s) 58, 118
BstDEI CTNAG 3 cut(s) 93, 194, 654
BstDSI CCRYGG 1 cut(s) 996
BstF5I GGATG 3 cut(s) 377, 427, 616
BstHHI GCGC 4 cut(s) 29, 49, 229, 530
BstKTI GATC 1 cut(s) 474
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 1 cut(s) 471
BstMWI GCNNNNNNNGC 6 cut(s) 159, 401, 485, 494, 655, 1095
BstNI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
BstSCI CCNGG 5 cut(s) 366, 711, 899, 963, 1035
BstSLI GKGCMC 1 cut(s) 742
BstV1I GCAGC 4 cut(s) 241, 497, 636, 844
BstV2I GAAGAC 1 cut(s) 90
BstXI CCANNNNNNTGG 2 cut(s) 859, 883
BsuRI GGCC 4 cut(s) 548, 1013, 1040, 1089
BtgI CCRYGG 1 cut(s) 996
BtsCI GGATG 3 cut(s) 377, 427, 616
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 321, 399, 804
BveI ACCTGC 1 cut(s) 975
CciI TCATGA 1 cut(s) 36
CfoI GCGC 4 cut(s) 29, 49, 229, 530
Cfr10I RCCGGY 1 cut(s) 1085
Cfr13I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
CsiI ACCWGGT 1 cut(s) 963
CviAII CATG 8 cut(s) 37, 44, 154, 525, 688, 721, 883, 1008
DdeI CTNAG 3 cut(s) 93, 194, 654
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
DraI TTTAAA 1 cut(s) 1125
DriI GACNNNNNGTC 1 cut(s) 985
EaeI YGGCCR 2 cut(s) 546, 1087
Eam1104I CTCTTC 2 cut(s) 58, 118
Eam1105I GACNNNNNGTC 1 cut(s) 985
EarI CTCTTC 2 cut(s) 58, 118
Eco130I CCWWGG 3 cut(s) 77, 543, 748
Eco147I AGGCCT 1 cut(s) 1040
Eco47I GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
EcoO109I RGGNCCY 2 cut(s) 967, 987
EcoRII CCWGG 5 cut(s) 366, 711, 899, 963, 1035
EcoT14I CCWWGG 3 cut(s) 77, 543, 748
EcoT22I ATGCAT 1 cut(s) 919
ErhI CCWWGG 3 cut(s) 77, 543, 748
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
FaqI GGGAC 4 cut(s) 201, 694, 834, 973
FatI CATG 8 cut(s) 36, 43, 153, 524, 687, 720, 882, 1007
FbaI TGATCA 1 cut(s) 471
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 4 cut(s) 230, 486, 650, 833
FokI GGATG 3 cut(s) 384, 414, 623
Fsp4HI GCNGC 4 cut(s) 230, 486, 650, 833
FspBI CTAG 2 cut(s) 176, 749
GlaI GCGC 4 cut(s) 28, 48, 228, 529
GluI GCNGC 4 cut(s) 230, 486, 650, 833
GsaI CCCAGC 2 cut(s) 994, 1067
HaeIII GGCC 4 cut(s) 548, 1013, 1040, 1089
HapII CCGG 3 cut(s) 329, 450, 1086
HhaI GCGC 4 cut(s) 29, 49, 229, 530
Hin1II CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
Hin6I GCGC 4 cut(s) 27, 47, 227, 528
HinP1I GCGC 4 cut(s) 27, 47, 227, 528
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 3 cut(s) 40, 928, 1077
HpaII CCGG 3 cut(s) 329, 450, 1086
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 5 cut(s) 206, 578, 624, 802, 862
Hpy188I TCNGA 4 cut(s) 130, 783, 961, 1076
Hpy188III TCNNGA 4 cut(s) 37, 431, 1081, 1109
Hpy8I GTNNAC 5 cut(s) 206, 578, 624, 802, 862
Hpy99I CGWCG 2 cut(s) 269, 1110
HpyAV CCTTC 3 cut(s) 591, 932, 937
HpyCH4III ACNGT 4 cut(s) 325, 469, 791, 1000
HpyCH4IV ACGT 3 cut(s) 267, 620, 821
HpyCH4V TGCA 6 cut(s) 404, 497, 510, 765, 827, 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 159, 401, 485, 494, 655, 1095
HpyF3I CTNAG 3 cut(s) 93, 194, 654
HpySE526I ACGT 3 cut(s) 267, 620, 821
Hsp92II CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
HspAI GCGC 4 cut(s) 27, 47, 227, 528
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 1 cut(s) 471
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 4 cut(s) 241, 497, 636, 844
LweI GCATC 2 cut(s) 367, 484
MabI ACCWGGT 1 cut(s) 963
MaeI CTAG 2 cut(s) 176, 749
MaeII ACGT 3 cut(s) 267, 620, 821
MaeIII GTNAC 2 cut(s) 292, 319
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 7 cut(s) 4, 45, 90, 93, 96, 105, 615
MhlI GDGCHC 1 cut(s) 742
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 5 cut(s) 241, 276, 302, 667, 1126
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 3 cut(s) 44, 862, 1054
MnlI CCTC 5 cut(s) 61, 80, 203, 513, 967
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 548
MseI TTAA 4 cut(s) 282, 1032, 1047, 1124
MslI CAYNNNNRTG 2 cut(s) 686, 881
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 3 cut(s) 329, 450, 1086
MspR9I CCNGG 5 cut(s) 368, 713, 901, 965, 1037
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 5 cut(s) 368, 713, 901, 965, 1037
MwoI GCNNNNNNNGC 6 cut(s) 159, 401, 485, 494, 655, 1095
NdeII GATC 1 cut(s) 471
NlaIII CATG 8 cut(s) 40, 47, 157, 528, 691, 724, 886, 1011
NlaIV GGNNCC 4 cut(s) 804, 864, 888, 989
NmuCI GTSAC 2 cut(s) 292, 319
NsiI ATGCAT 1 cut(s) 919
PagI TCATGA 1 cut(s) 36
PasI CCCWGGG 1 cut(s) 900
PceI AGGCCT 1 cut(s) 1040
PctI GAATGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 928, 1077
PflFI GACNNNGTC 1 cut(s) 965
PkrI GCNGC 4 cut(s) 231, 487, 651, 834
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 2 cut(s) 967, 987
Psp5II RGGWCCY 2 cut(s) 967, 987
Psp6I CCWGG 5 cut(s) 366, 711, 899, 963, 1035
PspFI CCCAGC 2 cut(s) 990, 1063
PspGI CCWGG 5 cut(s) 366, 711, 899, 963, 1035
PspN4I GGNNCC 4 cut(s) 804, 864, 888, 989
PspPI GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
PspPPI RGGWCCY 2 cut(s) 967, 987
PsyI GACNNNGTC 1 cut(s) 965
RseI CAYNNNNRTG 2 cut(s) 686, 881
SaqAI TTAA 4 cut(s) 282, 1032, 1047, 1124
SatI GCNGC 4 cut(s) 230, 486, 650, 833
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 9 cut(s) 424, 578, 802, 862, 886, 961, 967, 987, 1011
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 5 cut(s) 368, 713, 901, 965, 1037
SduI GDGCHC 1 cut(s) 742
SexAI ACCWGGT 1 cut(s) 963
SfaNI GCATC 2 cut(s) 367, 484
SinI GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
SmiMI CAYNNNNRTG 2 cut(s) 686, 881
SpeI ACTAGT 1 cut(s) 175
Sse9I AATT 5 cut(s) 241, 276, 302, 667, 1126
SseBI AGGCCT 1 cut(s) 1040
SsiI CCGC 1 cut(s) 1116
SspI AATATT 1 cut(s) 1102
SspMI CTAG 2 cut(s) 176, 749
StuI AGGCCT 1 cut(s) 1040
StyD4I CCNGG 5 cut(s) 366, 711, 899, 963, 1035
StyI CCWWGG 3 cut(s) 77, 543, 748
TaaI ACNGT 4 cut(s) 325, 469, 791, 1000
TaiI ACGT 3 cut(s) 270, 623, 824
TasI AATT 5 cut(s) 241, 276, 302, 667, 1126
TfiI GAWTC 2 cut(s) 928, 1077
Tru1I TTAA 4 cut(s) 282, 1032, 1047, 1124
Tru9I TTAA 4 cut(s) 282, 1032, 1047, 1124
TscAI CASTG 3 cut(s) 328, 406, 804
TseFI GTSAC 2 cut(s) 292, 319
TseI GCWGC 4 cut(s) 229, 485, 649, 832
Tsp45I GTSAC 2 cut(s) 292, 319
TspDTI ATGAA 3 cut(s) 17, 513, 573
TspGWI ACGGA 3 cut(s) 329, 373, 992
TspRI CASTG 3 cut(s) 328, 406, 804
Tth111I GACNNNGTC 1 cut(s) 965
VpaK11BI GGWCC 8 cut(s) 424, 578, 802, 862, 886, 961, 967, 987
XapI RAATTY 1 cut(s) 302
XmaJI CCTAGG 1 cut(s) 748
XmiI GTMKAC 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 176, 749
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.