pycom15g26050

Belongs to the glycosyl hydrolase 43 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004682
Physical Location & Seq
Reverse (-)
20721288 .. 20723410
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1407 bp
ATGAGGATGAGGAACAAATACAGGAAACCAACTGCTTTCCGTTGCAATGCAGGGAGTAGATGTTCAACGTCTGCTGTGGTTTGGAGCTTGGTGGGATGTTTTCTTATGTTTCAACTGTACGCTCTTGTTCGGCAAAAGGATTGGTTGGGAGGAGAAATTCAATTTCAAGCGAGTCACCACCCACAGTTCCAAGAACTTGAACAGGTGGAAGAGGAAAATATTCAAATTCCTCCACCGAGAAAGCGATCCCCACGTGCTGCAAAAAGAAAACCAAGGCGACCAACTACTCTGATTGATGAATTTCTTGATGAGAATTCTCAAATTAGACACGTATTCTTTCCCCAGAAGCTTGCCATCGATCCAATGAAGGACACGGGAAATGATAGCTATTACTTTTACCCTGGGAGGATTTGGTTGGATACTGATGGAAATCCTATTCAAGCCCATGGAGGTGGTATTCTATTCAATGAAAAATCAAGGACATACTATTGGTATGGGGAGTATAAAGATGGACCCACATACCATGCTCACAAAAGAGGAGCAGCTCGGGTTGACATCATAGGAGTGGGTTGCTATTCTTCCAACGACTTATGGAAATGGAAAAATGAAGGTCTCGTATTGGCAGCAGAAAAAGCAAATGAAACACATGATCTCCACGAATCCAATGTTCTTGAGAGGCCGAAAGTGATTTACAATGACCATACAGGGAAGTACGTTATGTGGATGCACATTGATGATGTTAACTATACTAAAGCTTCCGTTGGCGTTGCCATTAGTGATTACCCAACTGGTCCTTTTGATTATCTCTACAGCAAACGACCCCATGGATTTGATAGTAGGGACATGACAATCTTCAAAGATGATGATGGTATTGCTTATCTAATATACTCCTCCGATGACAATAGTGAACTTCATATTGGACCACTGACTGAAGATTACCTTGACGTGACGAACACTGTGAGAAGAATTCTTGTGGGACAACATCGGGAAGCCCCCGCACTGTTCAAGCATGAAGGAACTTATTACATGATCACTTCAGGCTGCACTGGATGGGCTCCTAATGAGGCACTGGCGCATGCAGCAGAGTCAGTCATGGGGCCATGGGAGTTCATGGGAAACCCCTGTGCTGGAGGGAACAAAGTGTCTCAACTTGCTACATTTTTTGCACAGAGCACATTTGTGCTTCCTGTGCCGGGATTTACAGGTTCATTTATCTTCATGGCAGATAGATGGAACCCAGCGGACTTGAGAGACTCAAGATATGTATGGTTGCCGTTGATAGTAGGAGGGCCAGCTGATCGGCCGCTCGATTACAATTTTGGTTTCCCATTATGGTCAAGAGTGTCGATATATTGGCATAGAAAGTGGAAACTTCCTCAGGGGTGGAGCGGGTGGAAACGAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_43

Protein Analysis

469

Amino Acids

53.8

Weight (kDa)

7.68

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_43 PF04616 187 - 369 2.1e-18 Glycosyl hydrolases family 43
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 1306, 1389
AciI CCGC 4 cut(s) 996, 1241, 1304, 1389
AclWI GGATC 2 cut(s) 240, 353
AcoI YGGCCR 1 cut(s) 1301
AcsI RAATTY 5 cut(s) 156, 225, 299, 313, 966
AcuI CTGAAG 2 cut(s) 951, 1020
AcvI CACGTG 1 cut(s) 254
AfaI GTAC 2 cut(s) 119, 713
AfiI CCNNNNNNNGG 2 cut(s) 1127, 1193
AflIII ACRYGT 1 cut(s) 328
AjiI CACGTC 1 cut(s) 946
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 900, 932
AleI CACNNNNGTG 1 cut(s) 1178
AloI GAACNNNNNNTCC 2 cut(s) 46, 78
AluBI AGCT 6 cut(s) 87, 349, 387, 545, 755, 1295
AluI AGCT 6 cut(s) 87, 349, 387, 545, 755, 1295
Alw21I GWGCWC 1 cut(s) 1175
Alw26I GTCTC 3 cut(s) 617, 1149, 1245
AlwI GGATC 2 cut(s) 240, 353
Ama87I CYCGRG 1 cut(s) 546
AoxI GGCC 4 cut(s) 677, 1097, 1289, 1301
ApeKI GCWGC 5 cut(s) 257, 542, 623, 1041, 1079
ApoI RAATTY 5 cut(s) 156, 225, 299, 313, 966
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 1075
AspS9I GGNCC 5 cut(s) 512, 791, 920, 1097, 1289
AsuC2I CCSGG 1 cut(s) 1194
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 546
AvaII GGWCC 3 cut(s) 512, 791, 920
AxyI CCTNAGG 1 cut(s) 1377
BanII GRGCYC 1 cut(s) 1057
BbrPI CACGTG 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 1175
BbvI GCAGC 5 cut(s) 244, 554, 635, 1028, 1091
BccI CCATC 6 cut(s) 362, 419, 503, 860, 1044, 1224
BceAI ACGGC 1 cut(s) 1258
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 1 cut(s) 412
BclI TGATCA 1 cut(s) 1029
BcnI CCSGG 1 cut(s) 1194
BcoDI GTCTC 3 cut(s) 617, 1149, 1245
BfmI CTRYAG 1 cut(s) 808
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 6 cut(s) 258, 543, 624, 1042, 1080, 1304
BlsI GCNGC 6 cut(s) 259, 544, 625, 1043, 1081, 1305
Bme1390I CCNGG 2 cut(s) 402, 1194
Bme18I GGWCC 3 cut(s) 512, 791, 920
BmeT110I CYCGRG 1 cut(s) 546
BmgBI CACGTC 1 cut(s) 946
BmgT120I GGNCC 5 cut(s) 512, 791, 920, 1097, 1289
BmiI GGNNCC 4 cut(s) 514, 1056, 1098, 1235
BmrFI CCNGG 2 cut(s) 402, 1194
BmsI GCATC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 1149
BpuEI CTTGAG 3 cut(s) 692, 1240, 1267
BpuMI CCSGG 1 cut(s) 1194
Bsa29I ATCGAT 1 cut(s) 357
BsaAI YACGTR 2 cut(s) 254, 331
BsaBI GATNNNNATC 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 6 cut(s) 272, 400, 401, 445, 823, 1100
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 636, 666
Bsc4I CCNNNNNNNGG 2 cut(s) 1127, 1193
Bse1I ACTGG 3 cut(s) 793, 1051, 1074
Bse21I CCTNAGG 1 cut(s) 1377
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 402
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 6 cut(s) 272, 400, 401, 445, 823, 1100
BseGI GGATG 4 cut(s) 12, 101, 729, 1055
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 2 cut(s) 1127, 1193
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 1391
BseNI ACTGG 3 cut(s) 793, 1051, 1074
BseRI GAGGAG 3 cut(s) 165, 552, 880
BseX3I CGGCCG 1 cut(s) 1301
BseXI GCAGC 5 cut(s) 244, 554, 635, 1028, 1091
BseYI CCCAGC 1 cut(s) 1237
BsgI GTGCAG 1 cut(s) 1027
Bsh1285I CGRYCG 1 cut(s) 1304
BshFI GGCC 4 cut(s) 679, 1099, 1291, 1303
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 1304
BsiHKAI GWGCWC 1 cut(s) 1175
BsiHKCI CYCGRG 1 cut(s) 546
BsiSI CCGG 1 cut(s) 1193
BslFI GGGAC 2 cut(s) 854, 990
BslI CCNNNNNNNGG 2 cut(s) 1127, 1193
BsmAI GTCTC 3 cut(s) 617, 1149, 1245
BsmFI GGGAC 2 cut(s) 854, 990
BsnI GGCC 4 cut(s) 679, 1099, 1291, 1303
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 1057, 1175
Bsp143I GATC 5 cut(s) 245, 358, 649, 1029, 1297
Bsp19I CCATGG 3 cut(s) 445, 823, 1100
BspACI CCGC 4 cut(s) 996, 1241, 1304, 1389
BspANI GGCC 4 cut(s) 679, 1099, 1291, 1303
BspCNI CTCAG 1 cut(s) 1390
BspDI ATCGAT 1 cut(s) 357
BspLI GGNNCC 4 cut(s) 514, 1056, 1098, 1235
BspPI GGATC 2 cut(s) 240, 353
BspTNI GGTCTC 1 cut(s) 617
BsrBI CCGCTC 2 cut(s) 1306, 1389
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 3 cut(s) 793, 1051, 1074
BssECI CCNNGG 6 cut(s) 272, 400, 401, 445, 823, 1100
BssMI GATC 5 cut(s) 245, 358, 649, 1029, 1297
BssT1I CCWWGG 4 cut(s) 272, 445, 823, 1100
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 4 cut(s) 117, 186, 958, 1002
Bst6I CTCTTC 1 cut(s) 204
BstBAI YACGTR 2 cut(s) 254, 331
BstC8I GCNNGC 3 cut(s) 351, 1077, 1293
BstDEI CTNAG 1 cut(s) 1377
BstDSI CCRYGG 3 cut(s) 445, 823, 1100
BstF5I GGATG 4 cut(s) 12, 101, 729, 1055
BstHHI GCGC 1 cut(s) 1075
BstKTI GATC 5 cut(s) 248, 361, 652, 1032, 1300
BstMAI GTCTC 3 cut(s) 617, 1149, 1245
BstMBI GATC 5 cut(s) 245, 358, 649, 1029, 1297
BstMCI CGRYCG 1 cut(s) 1304
BstMWI GCNNNNNNNGC 3 cut(s) 632, 1079, 1189
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 1079
BstSCI CCNGG 2 cut(s) 400, 1192
BstSFI CTRYAG 1 cut(s) 808
BstV1I GCAGC 5 cut(s) 244, 554, 635, 1028, 1091
BstXI CCANNNNNNTGG 1 cut(s) 452
BstZI CGGCCG 1 cut(s) 1301
Bsu15I ATCGAT 1 cut(s) 357
Bsu36I CCTNAGG 1 cut(s) 1377
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 4 cut(s) 679, 1099, 1291, 1303
BsuTUI ATCGAT 1 cut(s) 357
BtgI CCRYGG 3 cut(s) 445, 823, 1100
BtrI CACGTC 1 cut(s) 946
BtsCI GGATG 4 cut(s) 12, 101, 729, 1055
BtsIMutI CAGTG 5 cut(s) 923, 954, 998, 1044, 1067
Cac8I GCNNGC 3 cut(s) 351, 1077, 1293
CfoI GCGC 1 cut(s) 1075
Cfr13I GGNCC 5 cut(s) 512, 791, 920, 1097, 1289
ClaI ATCGAT 1 cut(s) 357
Csp6I GTAC 2 cut(s) 118, 712
CviQI GTAC 2 cut(s) 118, 712
DdeI CTNAG 1 cut(s) 1377
DpnI GATC 5 cut(s) 247, 360, 651, 1031, 1299
DpnII GATC 5 cut(s) 245, 358, 649, 1029, 1297
EaeI YGGCCR 1 cut(s) 1301
EagI CGGCCG 1 cut(s) 1301
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EclXI CGGCCG 1 cut(s) 1301
Eco130I CCWWGG 4 cut(s) 272, 445, 823, 1100
Eco24I GRGCYC 1 cut(s) 1057
Eco31I GGTCTC 1 cut(s) 617
Eco47I GGWCC 3 cut(s) 512, 791, 920
Eco52I CGGCCG 1 cut(s) 1301
Eco57I CTGAAG 2 cut(s) 951, 1020
Eco72I CACGTG 1 cut(s) 254
Eco81I CCTNAGG 1 cut(s) 1377
Eco88I CYCGRG 1 cut(s) 546
EcoRI GAATTC 2 cut(s) 313, 966
EcoRII CCWGG 1 cut(s) 400
EcoT14I CCWWGG 4 cut(s) 272, 445, 823, 1100
EcoT38I GRGCYC 1 cut(s) 1057
ErhI CCWWGG 4 cut(s) 272, 445, 823, 1100
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 2 cut(s) 854, 990
FauI CCCGC 2 cut(s) 1003, 1382
FbaI TGATCA 1 cut(s) 1029
Fnu4HI GCNGC 6 cut(s) 258, 543, 624, 1042, 1080, 1304
FokI GGATG 4 cut(s) 19, 108, 736, 1062
FriOI GRGCYC 1 cut(s) 1057
Fsp4HI GCNGC 6 cut(s) 258, 543, 624, 1042, 1080, 1304
GlaI GCGC 1 cut(s) 1074
GluI GCNGC 6 cut(s) 258, 543, 624, 1042, 1080, 1304
GsaI CCCAGC 1 cut(s) 1241
GsuI CTGGAG 1 cut(s) 1149
HaeIII GGCC 4 cut(s) 679, 1099, 1291, 1303
HapII CCGG 1 cut(s) 1193
HhaI GCGC 1 cut(s) 1075
Hin6I GCGC 1 cut(s) 1073
HinP1I GCGC 1 cut(s) 1073
HincII GTYRAC 2 cut(s) 553, 742
HindII GTYRAC 2 cut(s) 553, 742
HindIII AAGCTT 2 cut(s) 347, 753
HinfI GANTC 4 cut(s) 172, 659, 1085, 1253
HpaI GTTAAC 1 cut(s) 742
HpaII CCGG 1 cut(s) 1193
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 3 cut(s) 553, 742, 908
Hpy188I TCNGA 2 cut(s) 291, 895
Hpy188III TCNNGA 5 cut(s) 305, 671, 986, 1257, 1338
Hpy8I GTNNAC 3 cut(s) 553, 742, 908
HpyAV CCTTC 3 cut(s) 361, 602, 1007
HpyCH4III ACNGT 4 cut(s) 117, 186, 958, 1002
HpyCH4IV ACGT 5 cut(s) 68, 253, 330, 714, 945
HpyCH4V TGCA 7 cut(s) 45, 50, 260, 727, 1044, 1079, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 632, 1079, 1189
HpyF3I CTNAG 1 cut(s) 1377
HpySE526I ACGT 5 cut(s) 68, 253, 330, 714, 945
HspAI GCGC 1 cut(s) 1073
Ksp22I TGATCA 1 cut(s) 1029
KspAI GTTAAC 1 cut(s) 742
Kzo9I GATC 5 cut(s) 245, 358, 649, 1029, 1297
LmnI GCTCC 4 cut(s) 84, 539, 1060, 1386
Lsp1109I GCAGC 5 cut(s) 244, 554, 635, 1028, 1091
LweI GCATC 1 cut(s) 714
MaeII ACGT 5 cut(s) 68, 253, 330, 714, 945
MaeIII GTNAC 2 cut(s) 173, 946
MalI GATC 5 cut(s) 247, 360, 651, 1031, 1299
MbiI CCGCTC 2 cut(s) 1306, 1389
MboI GATC 5 cut(s) 245, 358, 649, 1029, 1297
MboII GAAGA 6 cut(s) 221, 570, 844, 944, 975, 1207
MhlI GDGCHC 2 cut(s) 1057, 1175
MluCI AATT 8 cut(s) 156, 161, 225, 299, 313, 321, 966, 1315
MlyI GAGTC 3 cut(s) 181, 1094, 1247
MmeI TCCRAC 2 cut(s) 396, 606
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 1 cut(s) 741
MslI CAYNNNNRTG 4 cut(s) 450, 563, 732, 1178
MspA1I CMGCKG 2 cut(s) 1241, 1295
MspI CCGG 1 cut(s) 1193
MspR9I CCNGG 2 cut(s) 402, 1194
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 3 cut(s) 632, 1079, 1189
NciI CCSGG 1 cut(s) 1194
NcoI CCATGG 3 cut(s) 445, 823, 1100
NdeII GATC 5 cut(s) 245, 358, 649, 1029, 1297
NlaIV GGNNCC 4 cut(s) 514, 1056, 1098, 1235
NmuCI GTSAC 2 cut(s) 173, 946
NspI RCATGY 1 cut(s) 1079
OliI CACNNNNGTG 1 cut(s) 1178
PaeI GCATGC 1 cut(s) 1079
PasI CCCWGGG 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 659
PkrI GCNGC 6 cut(s) 259, 544, 625, 1043, 1081, 1305
PleI GAGTC 3 cut(s) 180, 1093, 1247
PmaCI CACGTG 1 cut(s) 254
PmlI CACGTG 1 cut(s) 254
PpsI GAGTC 3 cut(s) 180, 1093, 1247
Ppu21I YACGTR 2 cut(s) 254, 331
Psp6I CCWGG 1 cut(s) 400
PspCI CACGTG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 1237
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 4 cut(s) 514, 1056, 1098, 1235
PspPI GGNCC 5 cut(s) 512, 791, 920, 1097, 1289
PvuII CAGCTG 1 cut(s) 1295
RsaI GTAC 2 cut(s) 119, 713
RsaNI GTAC 2 cut(s) 118, 712
RseI CAYNNNNRTG 4 cut(s) 450, 563, 732, 1178
SaqAI TTAA 1 cut(s) 741
SatI GCNGC 6 cut(s) 258, 543, 624, 1042, 1080, 1304
Sau3AI GATC 5 cut(s) 245, 358, 649, 1029, 1297
Sau96I GGNCC 5 cut(s) 512, 791, 920, 1097, 1289
SchI GAGTC 3 cut(s) 181, 1094, 1247
ScrFI CCNGG 2 cut(s) 402, 1194
SduI GDGCHC 2 cut(s) 1057, 1175
SfaNI GCATC 1 cut(s) 714
SfcI CTRYAG 1 cut(s) 808
SinI GGWCC 3 cut(s) 512, 791, 920
SmiMI CAYNNNNRTG 4 cut(s) 450, 563, 732, 1178
SmlI CTYRAG 3 cut(s) 671, 1246, 1255
SmoI CTYRAG 3 cut(s) 671, 1246, 1255
SphI GCATGC 1 cut(s) 1079
Sse9I AATT 8 cut(s) 156, 161, 225, 299, 313, 321, 966, 1315
SsiI CCGC 4 cut(s) 996, 1241, 1304, 1389
SspI AATATT 1 cut(s) 220
StyD4I CCNGG 2 cut(s) 400, 1192
StyI CCWWGG 4 cut(s) 272, 445, 823, 1100
TaaI ACNGT 4 cut(s) 117, 186, 958, 1002
TaiI ACGT 5 cut(s) 71, 256, 333, 717, 948
TaqI TCGA 3 cut(s) 357, 1308, 1346
TasI AATT 8 cut(s) 156, 161, 225, 299, 313, 321, 966, 1315
TauI GCSGC 1 cut(s) 1306
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 1 cut(s) 741
Tru9I TTAA 1 cut(s) 741
TscAI CASTG 5 cut(s) 930, 961, 1005, 1051, 1074
TseFI GTSAC 2 cut(s) 173, 946
TseI GCWGC 5 cut(s) 257, 542, 623, 1041, 1079
Tsp45I GTSAC 2 cut(s) 173, 946
TspGWI ACGGA 2 cut(s) 29, 748
TspRI CASTG 5 cut(s) 930, 961, 1005, 1051, 1074
VpaK11BI GGWCC 3 cut(s) 512, 791, 920
XapI RAATTY 5 cut(s) 156, 225, 299, 313, 966
XceI RCATGY 1 cut(s) 1079
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.