pycom15g26880

SPT2 chromatin protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003861
Physical Location & Seq
Reverse (-)
22110030 .. 22113318
3289 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1287 bp
ATGCGCGGATATGATAGAGATGAATATGGTCAGTCAGGCAATGAATATGAGGACTATGAGGATGAAGAGGATGGCGAAGAGTTTGAAGAGGAAGATCCAAAGCCTACCAAGGAAGCATTGAAATACCTTGAGTTTAGAGAACGCATCAAAGAACAAGTACGAAAGAAGCTGAAGAAGGAGGAAACTGGTTCTTCTTTGGCCAACTCCAGTGATAAAAAGAAGAAGCTCCCCAATGACAAAAAAAGAAGAGCTCTGGTTCAACCTCTGCTGGATCGAAATCTGGATCATATGATCAGAATCCCAAAGTCATTAATGAGGTACTTGGAGCAAATTGTTTTTGTTAGTGTTAAGACTAAAGTACAAAAGATTAAGGATACGAGAGATTACTCTTTTTTATATTCTGACAATGCAGAGCCCTCTGCTTCTGCAAAGGATCGCCCCCCTCAAAATGCCTCTGTTCCAAATTCTGAGGTGCGGTCTAGTCAAATGGCGACAAGTAGTAAATTACCTTCAGCAAATAATGGTAGACATGTACCTTCGGCAAATAATGGTAGACATGTGCCTTCGGCAAATAATGGTAGACATGTGCCTTCGGCAAATAATGGTAGACATCTACCTTCAGCAAATAATGGTAGACATCTACCTTCAGCAAATAATGGCAGAGATGTACCTGGCCGTCGTGATGAAAGGAAACCAGTATCTATGAAGGGACAGATGCATTCTGAAGTGGGGCCCAATAAGTTGAGTTCTTCCAGTAGACGACCTGATGCAACATCAATGGGCTCTAGAAAACAGCTTGGTAGTAACAGTGGAAATGGCCCTGGCCGGCCTCTAGAGACAAAAAGATTGCCGTCTAAGATGCCTGCTTCAACGACTGAGAGGAAAGCTTCTACACCAGGTCTGAAGAATCCCATGTCTGGTGTGCCCAGACCACCTCCTTCGAAGTTGCAGTCATCCATTCCAAGGCAGCAGTTGCAACAAAAAAAAGAAGTACGAGAACCTAATAAGCCCAAAGTGTTACTGAAAGAGTCATCAGGATTGTCAAGACCTCAGCACGTAAACAAGCCACAAATGCAAAGGCAAATCTCATCACGTTCTGTGTCTCAAGAGCGTCGTCCCAAAAAGAAGCCTATGAGACGGCACCCTGATGATGATGACCAGGATCTGGATTTTAGAAGTGAGATCAGAAAATTGTTTCGTCAACCAGAAAGATATGCTAGCGACGACGATGATAGTGATATGGAGGCAAACTTTGAGGATATTATGAGGGAGGAGAGACGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SPT2

Protein Analysis

429

Amino Acids

48.77

Weight (kDa)

9.9

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT2 PF08243 360 - 427 1e-07 SPT2 chromatin protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1140
AccB7I CCANNNNNTGG 1 cut(s) 1165
AccI GTMKAC 6 cut(s) 526, 553, 580, 607, 634, 757
AccII CGCG 1 cut(s) 6
AciI CCGC 2 cut(s) 6, 475
AclWI GGATC 5 cut(s) 89, 279, 291, 441, 1170
AcoI YGGCCR 3 cut(s) 198, 673, 823
AcsI RAATTY 1 cut(s) 463
AcuI CTGAAG 6 cut(s) 191, 495, 603, 630, 744, 923
AfaI GTAC 6 cut(s) 159, 320, 360, 534, 669, 993
AfiI CCNNNNNNNGG 3 cut(s) 917, 963, 1165
AflIII ACRYGT 3 cut(s) 529, 556, 583
AgsI TTSAA 4 cut(s) 86, 121, 260, 870
AjnI CCWGG 4 cut(s) 670, 820, 895, 1158
AluBI AGCT 5 cut(s) 169, 226, 251, 796, 887
AluI AGCT 5 cut(s) 169, 226, 251, 796, 887
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 4 cut(s) 830, 1107, 1129, 1270
AlwI GGATC 5 cut(s) 89, 279, 291, 441, 1170
AlwNI CAGNNNCTG 1 cut(s) 1165
AoxI GGCC 6 cut(s) 198, 673, 731, 817, 823, 827
ApaI GGGCCC 1 cut(s) 735
ApeKI GCWGC 1 cut(s) 967
ApoI RAATTY 1 cut(s) 463
ArsI GACNNNNNNTTYG 2 cut(s) 935, 967
AseI ATTAAT 1 cut(s) 311
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 731, 732, 818
AsuII TTCGAA 1 cut(s) 941
AsuNHI GCTAGC 1 cut(s) 1217
BaeGI GKGCMC 2 cut(s) 735, 927
BalI TGGCCA 1 cut(s) 200
BanI GGYRCC 1 cut(s) 1140
BanII GRGCYC 4 cut(s) 253, 417, 735, 785
BarI GAAGNNNNNNTAC 2 cut(s) 493, 525
Bbv12I GWGCWC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 1050
BbvI GCAGC 1 cut(s) 979
BccI CCATC 1 cut(s) 65
BceAI ACGGC 3 cut(s) 660, 835, 1154
BciT130I CCWGG 4 cut(s) 672, 822, 897, 1160
BciVI GTATCC 1 cut(s) 367
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 4 cut(s) 830, 1107, 1129, 1270
BfaI CTAG 4 cut(s) 480, 786, 833, 1218
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 1 cut(s) 968
BlsI GCNGC 1 cut(s) 969
Bme1390I CCNGG 4 cut(s) 672, 822, 897, 1160
BmgT120I GGNCC 3 cut(s) 731, 732, 818
BmiI GGNNCC 3 cut(s) 732, 733, 1142
BmrFI CCNGG 4 cut(s) 672, 822, 897, 1160
BmsI GCATC 4 cut(s) 153, 705, 757, 849
BmtI GCTAGC 1 cut(s) 1221
BpmI CTGGAG 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 1050
Bpu14I TTCGAA 1 cut(s) 941
BpuEI CTTGAG 2 cut(s) 149, 1089
BsaAI YACGTR 1 cut(s) 1057
BsaBI GATNNNNATC 2 cut(s) 276, 296
BsaJI CCNNGG 3 cut(s) 108, 820, 962
Bsc4I CCNNNNNNNGG 3 cut(s) 917, 963, 1165
Bse118I RCCGGY 1 cut(s) 825
Bse1I ACTGG 4 cut(s) 190, 207, 695, 753
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 2 cut(s) 276, 296
BseBI CCWGG 4 cut(s) 672, 822, 897, 1160
BseDI CCNNGG 3 cut(s) 108, 820, 962
BseGI GGATG 3 cut(s) 67, 76, 953
BseJI GATNNNNATC 2 cut(s) 276, 296
BseLI CCNNNNNNNGG 3 cut(s) 917, 963, 1165
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 3 cut(s) 459, 867, 1064
BseNI ACTGG 4 cut(s) 190, 207, 695, 753
BseRI GAGGAG 1 cut(s) 1286
BseSI GKGCMC 2 cut(s) 735, 927
BseXI GCAGC 1 cut(s) 979
Bsh1236I CGCG 1 cut(s) 6
BshFI GGCC 6 cut(s) 200, 675, 733, 819, 825, 829
BshNI GGYRCC 1 cut(s) 1140
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 826
BslFI GGGAC 2 cut(s) 723, 1101
BslI CCNNNNNNNGG 3 cut(s) 917, 963, 1165
BsmAI GTCTC 4 cut(s) 830, 1107, 1129, 1270
BsmBI CGTCTC 2 cut(s) 1129, 1270
BsmFI GGGAC 2 cut(s) 723, 1101
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 6 cut(s) 200, 675, 733, 819, 825, 829
Bsp119I TTCGAA 1 cut(s) 941
Bsp120I GGGCCC 1 cut(s) 731
Bsp1286I GDGCHC 5 cut(s) 253, 417, 735, 785, 927
Bsp143I GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
BspACI CCGC 2 cut(s) 6, 475
BspANI GGCC 6 cut(s) 200, 675, 733, 819, 825, 829
BspCNI CTCAG 3 cut(s) 460, 868, 1063
BspFNI CGCG 1 cut(s) 6
BspLI GGNNCC 3 cut(s) 732, 733, 1142
BspOI GCTAGC 1 cut(s) 1221
BspPI GGATC 5 cut(s) 89, 279, 291, 441, 1170
BspQI GCTCTTC 1 cut(s) 241
BspT104I TTCGAA 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 1140
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 825
BsrI ACTGG 4 cut(s) 190, 207, 695, 753
BssAI RCCGGY 1 cut(s) 825
BssECI CCNNGG 3 cut(s) 108, 820, 962
BssMI GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
BssT1I CCWWGG 2 cut(s) 108, 962
Bst2UI CCWGG 4 cut(s) 672, 822, 897, 1160
Bst4CI ACNGT 1 cut(s) 809
Bst6I CTCTTC 4 cut(s) 60, 72, 81, 241
BstAPI GCANNNNNTGC 1 cut(s) 973
BstBAI YACGTR 1 cut(s) 1057
BstBI TTCGAA 1 cut(s) 941
BstC8I GCNNGC 3 cut(s) 827, 864, 1219
BstDEI CTNAG 4 cut(s) 468, 855, 876, 1050
BstF5I GGATG 3 cut(s) 67, 76, 953
BstFNI CGCG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 7 cut(s) 97, 274, 286, 294, 436, 1165, 1185
BstMAI GTCTC 4 cut(s) 830, 1107, 1129, 1270
BstMBI GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
BstMWI GCNNNNNNNGC 2 cut(s) 973, 1072
BstNI CCWGG 4 cut(s) 672, 822, 897, 1160
BstNSI RCATGY 3 cut(s) 533, 560, 587
BstSCI CCNGG 4 cut(s) 670, 820, 895, 1158
BstSLI GKGCMC 2 cut(s) 735, 927
BstUI CGCG 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 979
BstX2I RGATCY 2 cut(s) 94, 1162
BstYI RGATCY 2 cut(s) 94, 1162
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 6 cut(s) 200, 675, 733, 819, 825, 829
BtsCI GGATG 3 cut(s) 67, 76, 953
BtsIMutI CAGTG 2 cut(s) 214, 814
Cac8I GCNNGC 3 cut(s) 827, 864, 1219
CaiI CAGNNNCTG 1 cut(s) 1165
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 825
Cfr13I GGNCC 3 cut(s) 731, 732, 818
CseI GACGC 1 cut(s) 1100
CsiI ACCWGGT 1 cut(s) 895
Csp6I GTAC 6 cut(s) 158, 319, 359, 533, 668, 992
CviAII CATG 4 cut(s) 530, 557, 584, 913
CviQI GTAC 6 cut(s) 158, 319, 359, 533, 668, 992
DdeI CTNAG 4 cut(s) 468, 855, 876, 1050
DpnI GATC 7 cut(s) 96, 273, 285, 293, 435, 1164, 1184
DpnII GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
EaeI YGGCCR 3 cut(s) 198, 673, 823
Eam1104I CTCTTC 4 cut(s) 60, 72, 81, 241
EarI CTCTTC 4 cut(s) 60, 72, 81, 241
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 2 cut(s) 108, 962
Eco24I GRGCYC 4 cut(s) 253, 417, 735, 785
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 6 cut(s) 191, 495, 603, 630, 744, 923
EcoICRI GAGCTC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 731
EcoRII CCWGG 4 cut(s) 670, 820, 895, 1158
EcoT14I CCWWGG 2 cut(s) 108, 962
EcoT22I ATGCAT 1 cut(s) 720
EcoT38I GRGCYC 4 cut(s) 253, 417, 735, 785
ErhI CCWWGG 2 cut(s) 108, 962
Esp3I CGTCTC 2 cut(s) 1129, 1270
FaeI CATG 4 cut(s) 533, 560, 587, 916
FaqI GGGAC 2 cut(s) 723, 1101
FatI CATG 4 cut(s) 529, 556, 583, 912
FauNDI CATATG 1 cut(s) 288
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 6 cut(s) 526, 553, 580, 607, 634, 757
Fnu4HI GCNGC 1 cut(s) 968
FokI GGATG 3 cut(s) 74, 83, 940
FriOI GRGCYC 4 cut(s) 253, 417, 735, 785
FseI GGCCGGCC 1 cut(s) 829
Fsp4HI GCNGC 1 cut(s) 968
FspBI CTAG 4 cut(s) 480, 786, 833, 1218
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 968
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 6 cut(s) 200, 675, 733, 819, 825, 829
HapII CCGG 1 cut(s) 826
HgaI GACGC 1 cut(s) 1100
HhaI GCGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 533, 560, 587, 916
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 1202
HindII GTYRAC 1 cut(s) 1202
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 3 cut(s) 297, 907, 1028
HpaII CCGG 1 cut(s) 826
Hpy166II GTNNAC 8 cut(s) 527, 554, 581, 608, 635, 758, 1060, 1202
Hpy188I TCNGA 6 cut(s) 296, 403, 469, 724, 903, 1187
Hpy188III TCNNGA 8 cut(s) 281, 680, 786, 833, 1035, 1044, 1106, 1166
Hpy8I GTNNAC 8 cut(s) 527, 554, 581, 608, 635, 758, 1060, 1202
Hpy99I CGWCG 4 cut(s) 681, 1116, 1226, 1229
HpyCH4III ACNGT 1 cut(s) 809
HpyCH4IV ACGT 2 cut(s) 1056, 1093
HpyCH4V TGCA 7 cut(s) 410, 428, 718, 770, 949, 976, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 973, 1072
HpyF3I CTNAG 4 cut(s) 468, 855, 876, 1050
HpySE526I ACGT 2 cut(s) 1056, 1093
Hsp92II CATG 4 cut(s) 533, 560, 587, 916
HspAI GCGC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 825
KroNI GCCGGC 1 cut(s) 827
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 2 cut(s) 231, 325
Lsp1109I GCAGC 1 cut(s) 979
LweI GCATC 4 cut(s) 153, 705, 757, 849
MabI ACCWGGT 1 cut(s) 895
MaeI CTAG 4 cut(s) 480, 786, 833, 1218
MaeII ACGT 2 cut(s) 1056, 1093
MaeIII GTNAC 2 cut(s) 803, 1017
MalI GATC 7 cut(s) 96, 273, 285, 293, 435, 1164, 1184
MboI GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
MflI RGATCY 2 cut(s) 94, 1162
MhlI GDGCHC 5 cut(s) 253, 417, 735, 785, 927
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 4 cut(s) 330, 463, 503, 1190
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 1037
Mox20I TGGCCA 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 720
MroNI GCCGGC 1 cut(s) 825
MscI TGGCCA 1 cut(s) 200
MseI TTAA 3 cut(s) 311, 348, 369
MslI CAYNNNNRTG 1 cut(s) 1146
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 1 cut(s) 826
MspR9I CCNGG 4 cut(s) 672, 822, 897, 1160
Mva1269I GAATGC 1 cut(s) 718
MvaI CCWGG 4 cut(s) 672, 822, 897, 1160
MvnI CGCG 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 973, 1072
NaeI GCCGGC 1 cut(s) 827
NdeI CATATG 1 cut(s) 288
NdeII GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
NgoMIV GCCGGC 1 cut(s) 825
NheI GCTAGC 1 cut(s) 1217
NlaIII CATG 4 cut(s) 533, 560, 587, 916
NlaIV GGNNCC 3 cut(s) 732, 733, 1142
NsiI ATGCAT 1 cut(s) 720
NspI RCATGY 3 cut(s) 533, 560, 587
NspV TTCGAA 1 cut(s) 941
PciI ACATGT 3 cut(s) 529, 556, 583
PciSI GCTCTTC 1 cut(s) 241
PctI GAATGC 1 cut(s) 718
PdiI GCCGGC 1 cut(s) 827
PfeI GAWTC 2 cut(s) 297, 907
PflMI CCANNNNNTGG 1 cut(s) 1165
PkrI GCNGC 1 cut(s) 969
PleI GAGTC 1 cut(s) 1036
PpsI GAGTC 1 cut(s) 1036
Ppu21I YACGTR 1 cut(s) 1057
PscI ACATGT 3 cut(s) 529, 556, 583
PshBI ATTAAT 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 253
Psp6I CCWGG 4 cut(s) 670, 820, 895, 1158
PspGI CCWGG 4 cut(s) 670, 820, 895, 1158
PspN4I GGNNCC 3 cut(s) 732, 733, 1142
PspOMI GGGCCC 1 cut(s) 731
PspPI GGNCC 3 cut(s) 731, 732, 818
PstNI CAGNNNCTG 1 cut(s) 1165
PsuI RGATCY 2 cut(s) 94, 1162
RigI GGCCGGCC 1 cut(s) 829
RsaI GTAC 6 cut(s) 159, 320, 360, 534, 669, 993
RsaNI GTAC 6 cut(s) 158, 319, 359, 533, 668, 992
RseI CAYNNNNRTG 1 cut(s) 1146
SacI GAGCTC 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 3 cut(s) 311, 348, 369
SatI GCNGC 1 cut(s) 968
Sau3AI GATC 7 cut(s) 94, 271, 283, 291, 433, 1162, 1182
Sau96I GGNCC 3 cut(s) 731, 732, 818
SchI GAGTC 1 cut(s) 1037
ScrFI CCNGG 4 cut(s) 672, 822, 897, 1160
SduI GDGCHC 5 cut(s) 253, 417, 735, 785, 927
SexAI ACCWGGT 1 cut(s) 895
SfaNI GCATC 4 cut(s) 153, 705, 757, 849
SfuI TTCGAA 1 cut(s) 941
SmiMI CAYNNNNRTG 1 cut(s) 1146
SmlI CTYRAG 2 cut(s) 128, 1104
SmoI CTYRAG 2 cut(s) 128, 1104
Sse9I AATT 4 cut(s) 330, 463, 503, 1190
SsiI CCGC 2 cut(s) 6, 475
SspMI CTAG 4 cut(s) 480, 786, 833, 1218
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 4 cut(s) 670, 820, 895, 1158
StyI CCWWGG 2 cut(s) 108, 962
TaaI ACNGT 1 cut(s) 809
TaiI ACGT 2 cut(s) 1059, 1096
TaqI TCGA 2 cut(s) 274, 941
TasI AATT 4 cut(s) 330, 463, 503, 1190
TatI WGTACW 1 cut(s) 358
TfiI GAWTC 2 cut(s) 297, 907
Tru1I TTAA 3 cut(s) 311, 348, 369
Tru9I TTAA 3 cut(s) 311, 348, 369
TscAI CASTG 2 cut(s) 214, 814
TseI GCWGC 1 cut(s) 967
TspDTI ATGAA 5 cut(s) 36, 57, 78, 699, 719
TspRI CASTG 2 cut(s) 214, 814
Van91I CCANNNNNTGG 1 cut(s) 1165
VspI ATTAAT 1 cut(s) 311
XapI RAATTY 1 cut(s) 463
XbaI TCTAGA 2 cut(s) 785, 832
XceI RCATGY 3 cut(s) 533, 560, 587
XmiI GTMKAC 6 cut(s) 526, 553, 580, 607, 634, 757
XspI CTAG 4 cut(s) 480, 786, 833, 1218
Zsp2I ATGCAT 1 cut(s) 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.