Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007893

Physical Location & Seq

Genomic Coordinates Forward (+)

23800015 .. 23801411

Gene Structure 1397 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGAGGCTTGGAAGCTCAGATTCCTTTGGTGCTATGATTTCCATCTGCCCAACAACAGAGGAGCACAGTCCGAGAAACAACCATGTTTACAGCAGAGAATTCCAATCCATGTTGGATGGCTTAGATGAGGAAGGGTGTGTCGAAGAAGCCGGCCACGTTTCCGAGAAGAAGAGGAGATTGAGCGTTGAACAAGTGAAGGCCTTAGAGAAAAACTTTGAGGTGGAGAACAAGCTTGAACCTGAAAGAAAGGTGAAGCTTGCCCAAGAACTAGGCCTCCAACCAAGACAAGTCGCCGTGTGGTTCCAGAACCGCCGTGCTCGTTGGAAAACCAAACAATTGGAGCGCGATTATGGCGTTCTCAAAGCCAATTACGACACTGTCAAGCGGAACTACGATACCCTTCAACATGACAATGAAGCCCTTCTCAAGGAGATAAAGCAATTGAAAGCAAAGTTGCAAGAAGATAACGTAGCCAGCAAGAATCCCACCGTGAAAGAAGAGCAACTCTTGGGAAAAGATCAGAGTTACAAAGTGGTTCGGGAGCAGAGCCAGTCACCGCCACCACCTCCGGAATCCTCTGTTCCAGAAACAGAGTGTAAAGAGCTCAACTTTGAGAGCTTCAACAACACAAGTGGAGTACTAGAAGCCGTCTCATTGTTCCCAGATTTCAAAGATGGCTCTTCGGACAGTGACTCGAGTGCGATCGTTGAACGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009648 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030308 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0040008 GO:0040034 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0046983 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0097306 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

241

Amino Acids

27.43

Weight (kDa)

5.61

Isoelectric Point (pI)

67.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	57 - 110	4e-17	Homeodomain
HALZ	PF02183	112 - 154	1.6e-16	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22430 AT4G40060 AT5G65310 AT5G65310
fragaria_vesca	FvH4_1g20230 FvH4_1g20230
malus_domestica	MD01G1036200.v1.1 MD15G1101700.v1.1 MD15G1319800.v1.1
prunus_persica	Prupe.6G193400_v2.0.a1 Prupe.6G193400_v2.0.a1
pyrus_communis	pycom01g06310 pycom15g28110
rosa_chinensis	RchiOBHm_Chr2g0112311
rosa_laevigata	RLG00000017970
rosa_multiflora	Rmu_sc0004467.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131510
rosa_rugosa	Rorug02G0179900.1 Rorug02G0180000
rosa_samantha	Rh2AG232800 Rh2BG246100 Rh2CG236800 Rh2DG240400
rosa_wichuraiana	Rw2G018050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	3 cut(s)	313, 388, 560
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	430
AgsI	TTSAA	7 cut(s)	191, 239, 407, 448, 625, 673, 713
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	5 cut(s)	18, 235, 259, 607, 621
AluI	AGCT	5 cut(s)	18, 235, 259, 607, 621
Alw21I	GWGCWC	3 cut(s)	69, 322, 609
Alw26I	GTCTC	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	697
Aor13HI	TCCGGA	1 cut(s)	571
AoxI	GGCC	3 cut(s)	154, 201, 274
ApoI	RAATTY	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	265, 549
AvaI	CYCGRG	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	609
Bbv12I	GWGCWC	3 cut(s)	69, 322, 609
BccI	CCATC	3 cut(s)	53, 113, 671
BceAI	ACGGC	3 cut(s)	281, 300, 635
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	2 cut(s)	272, 644
BmcAI	AGTACT	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	697
BmiI	GGNNCC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	571
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	553
Bse8I	GATNNNNATC	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	571
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	77, 190
Bsh1236I	CGCG	1 cut(s)	348
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	3 cut(s)	156, 203, 276
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	3 cut(s)	69, 322, 609
BsiHKCI	CYCGRG	1 cut(s)	697
BsiSI	CCGG	2 cut(s)	153, 572
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmAI	GTCTC	1 cut(s)	658
BsmBI	CGTCTC	1 cut(s)	658
BsnI	GGCC	3 cut(s)	156, 203, 276
BsoBI	CYCGRG	1 cut(s)	697
Bsp1286I	GDGCHC	3 cut(s)	69, 322, 609
Bsp13I	TCCGGA	1 cut(s)	571
Bsp143I	GATC	2 cut(s)	520, 705
BspACI	CCGC	3 cut(s)	313, 388, 560
BspANI	GGCC	3 cut(s)	156, 203, 276
BspCNI	CTCAG	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	305
BspQI	GCTCTTC	2 cut(s)	495, 688
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	2 cut(s)	520, 705
Bst4CI	ACNGT	4 cut(s)	71, 382, 493, 692
Bst6I	CTCTTC	3 cut(s)	167, 495, 688
BstC8I	GCNNGC	3 cut(s)	154, 261, 478
BstDEI	CTNAG	3 cut(s)	19, 124, 205
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	523, 708
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	2 cut(s)	520, 705
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstUI	CGCG	1 cut(s)	348
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	156, 203, 276
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	378, 697
Cac8I	GCNNGC	3 cut(s)	154, 261, 478
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	641
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	3 cut(s)	86, 112, 410
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	3 cut(s)	19, 124, 205
DpnI	GATC	2 cut(s)	522, 707
DpnII	GATC	2 cut(s)	520, 705
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	3 cut(s)	167, 495, 688
EarI	CTCTTC	3 cut(s)	167, 495, 688
Ecl136II	GAGCTC	1 cut(s)	607
Eco147I	AGGCCT	2 cut(s)	203, 276
Eco24I	GRGCYC	1 cut(s)	609
Eco53kI	GAGCTC	1 cut(s)	607
Eco88I	CYCGRG	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	658
FaeI	CATG	3 cut(s)	89, 115, 413
FaiI	YATR	5 cut(s)	38, 87, 113, 354, 411
FatI	CATG	3 cut(s)	85, 111, 409
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	609
FspBI	CTAG	2 cut(s)	272, 644
GlaI	GCGC	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	156, 203, 276
HapII	CCGG	2 cut(s)	153, 572
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	3 cut(s)	89, 115, 413
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	233, 257
HinfI	GANTC	4 cut(s)	23, 484, 575, 695
HpaII	CCGG	2 cut(s)	153, 572
HphI	GGTGA	2 cut(s)	265, 549
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	5 cut(s)	22, 75, 166, 525, 688
Hpy188III	TCNNGA	4 cut(s)	307, 542, 572, 587
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	128, 193, 413, 434
HpyCH4III	ACNGT	4 cut(s)	71, 382, 493, 692
HpyCH4IV	ACGT	2 cut(s)	159, 471
HpyCH4V	TGCA	1 cut(s)	460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpyF3I	CTNAG	3 cut(s)	19, 124, 205
HpySE526I	ACGT	2 cut(s)	159, 471
Hsp92II	CATG	3 cut(s)	89, 115, 413
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	571
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	520, 705
LguI	GCTCTTC	2 cut(s)	495, 688
LmnI	GCTCC	3 cut(s)	64, 343, 544
LpnPI	CCDG	8 cut(s)	166, 255, 320, 490, 566, 585, 600, 678
MaeI	CTAG	2 cut(s)	272, 644
MaeII	ACGT	2 cut(s)	159, 471
MaeIII	GTNAC	3 cut(s)	527, 555, 692
MalI	GATC	2 cut(s)	522, 707
MboI	GATC	2 cut(s)	520, 705
MboII	GAAGA	7 cut(s)	16, 158, 181, 184, 476, 512, 675
MfeI	CAATTG	2 cut(s)	338, 443
MhlI	GDGCHC	3 cut(s)	69, 322, 609
MluCI	AATT	4 cut(s)	101, 338, 370, 443
MlyI	GAGTC	1 cut(s)	689
MmeI	TCCRAC	3 cut(s)	96, 304, 305
MnlI	CCTC	7 cut(s)	55, 124, 168, 214, 287, 579, 589
MroI	TCCGGA	1 cut(s)	571
MroNI	GCCGGC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	2 cut(s)	153, 572
MunI	CAATTG	2 cut(s)	338, 443
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	354
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	520, 705
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	3 cut(s)	89, 115, 413
NlaIV	GGNNCC	1 cut(s)	305
NmuCI	GTSAC	2 cut(s)	555, 692
PaeR7I	CTCGAG	1 cut(s)	697
PceI	AGGCCT	2 cut(s)	203, 276
PciSI	GCTCTTC	2 cut(s)	495, 688
PdiI	GCCGGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	23, 484, 575
PflFI	GACNNNGTC	1 cut(s)	380
Ple19I	CGATCG	1 cut(s)	708
PleI	GAGTC	1 cut(s)	689
PpsI	GAGTC	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	305
PspXI	VCTCGAGB	1 cut(s)	697
PsyI	GACNNNGTC	1 cut(s)	380
PvuI	CGATCG	1 cut(s)	708
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	609
SapI	GCTCTTC	2 cut(s)	495, 688
Sau3AI	GATC	2 cut(s)	520, 705
ScaI	AGTACT	1 cut(s)	642
SchI	GAGTC	1 cut(s)	689
SduI	GDGCHC	3 cut(s)	69, 322, 609
Sfr274I	CTCGAG	1 cut(s)	697
SlaI	CTCGAG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	2 cut(s)	428, 697
SmoI	CTYRAG	2 cut(s)	428, 697
Sse9I	AATT	4 cut(s)	101, 338, 370, 443
SseBI	AGGCCT	2 cut(s)	203, 276
SsiI	CCGC	3 cut(s)	313, 388, 560
SspMI	CTAG	2 cut(s)	272, 644
SstI	GAGCTC	1 cut(s)	609
StuI	AGGCCT	2 cut(s)	203, 276
TaaI	ACNGT	4 cut(s)	71, 382, 493, 692
TaiI	ACGT	2 cut(s)	162, 474
TaqI	TCGA	2 cut(s)	144, 698
TasI	AATT	4 cut(s)	101, 338, 370, 443
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	3 cut(s)	23, 484, 575
TscAI	CASTG	2 cut(s)	385, 697
TseFI	GTSAC	2 cut(s)	555, 692
Tsp45I	GTSAC	2 cut(s)	555, 692
TspDTI	ATGAA	2 cut(s)	17, 432
TspRI	CASTG	2 cut(s)	385, 697
Tth111I	GACNNNGTC	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	101
XhoI	CTCGAG	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	272, 644
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.