Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007382

Physical Location & Seq

Genomic Coordinates Forward (+)

24101254 .. 24103960

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTGTATCACGATCCCTCTCTCTTCCTCCTCCTCTTCCTCTTTTATACTCTCACACACAACCCTCGTTCGGTTCCGAACCCCCAGAAATCTTTCCATCTCCTCCACACGAAAACGGCTCTCACTCTCAGTCTCGGTCTCAGCTTCCTCTGCTCTCCAAGCTCTGATTTTCGACTGCGACGGCGTAATACTCGAGTCCGAGCACTTGCACCGCCAAGCTTACAACGAGGCCTTCGCTCACTTCAATGTCCGCTGCTCTTCCTCTGCCTCTCAACCCCTCAACTGGGACCTCCACTTCTACGATCAGCTCCAGAACCAAATCGGCGGTGGCAAACCCAAAATGCGATGGTACTTTAAGGAGCACGGTTGGCCGTCGTCCACAATCTTCGAGAAGCCTCCGGAAGACGATGAGGGCCGAGCCAAGATCATTGATACTATTCAGGATTGGAAAACTGAAAGGTACAAAGAAATTATCAAATCCGGAACTGTAAGGAGACATCTATACTTGCTGCATTTTGGTTTTCCTGTGGAACCAAGACCAGGAGTTTTAAGATTGATGGATGAGGCCAAGGCTTCTGGGAAAAAGCTTGCTGTTTGCTCTGCAGCAACTAAAAGTTCAGTAATTCTATGTCTTGAAAACCTTATAGGAATTGGTCTTGATTGCTTCCTTGCTGGTGATGATGTAAAGGAAAAAAAGCCTGATCCTTTAATTTATATTACTGCTGCCAAGAGACTTGGAGTCTCGGAGAAAGATTGTTTGGTCGTGGAGGACAGTGTTATTGGTCTACAGGCAGCAACAAAAGCTGGGATGTCATGTGTCATTACCTACACCTCTTCAACAGCTGAGCAGGATTTCAAAGATGCAATAGCAATCTACCCTGACTTGAGTAGCATAAGACTGAAAGATTTGGATTTGTTACTTCATAACGCTGCCATTGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

316

Amino Acids

34.87

Weight (kDa)

7.6

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	54 - 270	5.4e-22	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	175 - 274	5e-15	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007382)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39970
fragaria_vesca	FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_1g20570 FvH4_6g52570 FvH4_6g52570
malus_domestica	MD15G1322100.v1.1
prunus_persica	Prupe.6G190700_v2.0.a1 Prupe.6G190700_v2.0.a1
pyrus_communis	pycom15g28300
rosa_chinensis	RchiOBHm_Chr2g0112791
rosa_laevigata	RLG00000018010
rosa_multiflora	Rmu_co8125272.1_g000001 Rmu_sc0001708.1_g000020 Rmu_sc0002351.1_g000008
rosa_roxburghii	Rroxscaffold_2G00131140
rosa_rugosa	Rorug02G0182700
rosa_samantha	Rh2AG237400 Rh2BG250100 Rh2CG241300 Rh2DG244800
rosa_wichuraiana	Rw2G018360 Rw2G018550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	787
AccIII	TCCGGA	2 cut(s)	400, 482
AciI	CCGC	3 cut(s)	214, 253, 327
AclWI	GGATC	2 cut(s)	10, 698
AcoI	YGGCCR	1 cut(s)	371
AfaI	GTAC	2 cut(s)	353, 464
AfiI	CCNNNNNNNGG	4 cut(s)	72, 285, 286, 542
AgsI	TTSAA	4 cut(s)	247, 638, 840, 859
AhdI	GACNNNNNGTC	1 cut(s)	740
AjnI	CCWGG	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	7 cut(s)	146, 164, 221, 310, 589, 806, 845
AluI	AGCT	7 cut(s)	146, 164, 221, 310, 589, 806, 845
Alw21I	GWGCWC	2 cut(s)	207, 366
Alw26I	GTCTC	5 cut(s)	139, 145, 490, 727, 748
AlwI	GGATC	2 cut(s)	10, 698
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	2 cut(s)	400, 482
AoxI	GGCC	4 cut(s)	231, 371, 415, 567
ApeKI	GCWGC	6 cut(s)	255, 511, 605, 725, 794, 932
Asp700I	GAANNNNTTC	1 cut(s)	94
AspS9I	GGNCC	2 cut(s)	289, 415
AsuHPI	GGTGA	1 cut(s)	689
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	2 cut(s)	207, 366
BbvI	GCAGC	6 cut(s)	242, 498, 617, 712, 806, 919
BccI	CCATC	3 cut(s)	107, 342, 553
BceAI	ACGGC	3 cut(s)	134, 199, 358
BciT130I	CCWGG	1 cut(s)	543
BcoDI	GTCTC	5 cut(s)	139, 145, 490, 727, 748
BfmI	CTRYAG	2 cut(s)	603, 788
BisI	GCNGC	6 cut(s)	256, 512, 606, 726, 795, 933
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	6 cut(s)	257, 513, 607, 727, 796, 934
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	289
BmeRI	GACNNNNNGTC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	2 cut(s)	289, 415
BmiI	GGNNCC	3 cut(s)	77, 290, 534
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	853
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	1 cut(s)	296
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	907
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	2 cut(s)	400, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	72, 285, 286, 542
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	936
BseAI	TCCGGA	2 cut(s)	400, 482
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	568, 816
BseLI	CCNNNNNNNGG	4 cut(s)	72, 285, 286, 542
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	3 cut(s)	144, 156, 837
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	3 cut(s)	22, 25, 94
BseXI	GCAGC	6 cut(s)	242, 498, 617, 712, 806, 919
BseYI	CCCAGC	1 cut(s)	806
BshFI	GGCC	4 cut(s)	233, 373, 417, 569
BsiHKAI	GWGCWC	2 cut(s)	207, 366
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	401, 483
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	4 cut(s)	72, 285, 286, 542
BsmAI	GTCTC	5 cut(s)	139, 145, 490, 727, 748
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	4 cut(s)	233, 373, 417, 569
Bso31I	GGTCTC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	207, 366
Bsp13I	TCCGGA	2 cut(s)	400, 482
Bsp143I	GATC	4 cut(s)	15, 304, 426, 703
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	3 cut(s)	214, 253, 327
BspANI	GGCC	4 cut(s)	233, 373, 417, 569
BspCNI	CTCAG	3 cut(s)	143, 155, 838
BspEI	TCCGGA	2 cut(s)	400, 482
BspLI	GGNNCC	3 cut(s)	77, 290, 534
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	2 cut(s)	10, 698
BspQI	GCTCTTC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	936
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	4 cut(s)	15, 304, 426, 703
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	3 cut(s)	368, 490, 776
Bst6I	CTCTTC	4 cut(s)	31, 43, 265, 841
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	3 cut(s)	130, 142, 846
BstF5I	GGATG	2 cut(s)	568, 816
BstKTI	GATC	4 cut(s)	18, 307, 429, 706
BstMAI	GTCTC	5 cut(s)	139, 145, 490, 727, 748
BstMBI	GATC	4 cut(s)	15, 304, 426, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 161, 370, 803, 938
BstNI	CCWGG	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	2 cut(s)	603, 788
BstV1I	GCAGC	6 cut(s)	242, 498, 617, 712, 806, 919
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	233, 373, 417, 569
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	568, 816
BtsIMutI	CAGTG	1 cut(s)	781
Cac8I	GCNNGC	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	289, 415
Csp6I	GTAC	2 cut(s)	352, 463
CviAII	CATG	1 cut(s)	816
CviQI	GTAC	2 cut(s)	352, 463
DdeI	CTNAG	3 cut(s)	130, 142, 846
DpnI	GATC	4 cut(s)	17, 306, 428, 705
DpnII	GATC	4 cut(s)	15, 304, 426, 703
DriI	GACNNNNNGTC	1 cut(s)	740
EaeI	YGGCCR	1 cut(s)	371
Eam1104I	CTCTTC	4 cut(s)	31, 43, 265, 841
Eam1105I	GACNNNNNGTC	1 cut(s)	740
EarI	CTCTTC	4 cut(s)	31, 43, 265, 841
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	819
FaiI	YATR	8 cut(s)	50, 505, 631, 647, 717, 817, 896, 927
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	815
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	6 cut(s)	256, 512, 606, 726, 795, 933
FokI	GGATG	2 cut(s)	575, 823
Fsp4HI	GCNGC	6 cut(s)	256, 512, 606, 726, 795, 933
GluI	GCNGC	6 cut(s)	256, 512, 606, 726, 795, 933
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	4 cut(s)	233, 373, 417, 569
HapII	CCGG	2 cut(s)	401, 483
Hin1II	CATG	1 cut(s)	819
HindIII	AAGCTT	2 cut(s)	219, 587
HinfI	GANTC	2 cut(s)	197, 741
HpaII	CCGG	2 cut(s)	401, 483
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	2 cut(s)	381, 788
Hpy188I	TCNGA	4 cut(s)	80, 168, 202, 748
Hpy188III	TCNNGA	8 cut(s)	13, 313, 391, 401, 443, 483, 635, 659
Hpy8I	GTNNAC	2 cut(s)	381, 788
Hpy99I	CGWCG	2 cut(s)	185, 379
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	3 cut(s)	368, 490, 776
HpyCH4V	TGCA	4 cut(s)	211, 514, 605, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 161, 370, 803, 938
HpyF3I	CTNAG	3 cut(s)	130, 142, 846
Hsp92II	CATG	1 cut(s)	819
Kpn2I	TCCGGA	2 cut(s)	400, 482
Kzo9I	GATC	4 cut(s)	15, 304, 426, 703
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	315, 361
Lsp1109I	GCAGC	6 cut(s)	242, 498, 617, 712, 806, 919
LweI	GCATC	1 cut(s)	853
MaeIII	GTNAC	1 cut(s)	918
MalI	GATC	4 cut(s)	17, 306, 428, 705
MboI	GATC	4 cut(s)	15, 304, 426, 703
MboII	GAAGA	6 cut(s)	18, 30, 252, 379, 416, 828
MhlI	GDGCHC	2 cut(s)	207, 366
MluCI	AATT	5 cut(s)	471, 624, 651, 711, 943
MlyI	GAGTC	2 cut(s)	206, 750
MroI	TCCGGA	2 cut(s)	400, 482
MroXI	GAANNNNTTC	1 cut(s)	94
MseI	TTAA	3 cut(s)	357, 551, 710
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	2 cut(s)	255, 845
MspI	CCGG	2 cut(s)	401, 483
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	5 cut(s)	152, 161, 370, 803, 938
NdeII	GATC	4 cut(s)	15, 304, 426, 703
NlaIII	CATG	1 cut(s)	819
NlaIV	GGNNCC	3 cut(s)	77, 290, 534
NmeAIII	GCCGAG	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	94
PkrI	GCNGC	6 cut(s)	257, 513, 607, 727, 796, 934
PleI	GAGTC	2 cut(s)	205, 749
PpsI	GAGTC	2 cut(s)	205, 749
PpuMI	RGGWCCY	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	77, 290, 534
PspPI	GGNCC	2 cut(s)	289, 415
PspPPI	RGGWCCY	1 cut(s)	289
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	607
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	2 cut(s)	353, 464
RsaNI	GTAC	2 cut(s)	352, 463
RseI	CAYNNNNRTG	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	357, 551, 710
SatI	GCNGC	6 cut(s)	256, 512, 606, 726, 795, 933
Sau3AI	GATC	4 cut(s)	15, 304, 426, 703
Sau96I	GGNCC	2 cut(s)	289, 415
SchI	GAGTC	2 cut(s)	206, 750
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	207, 366
SfaNI	GCATC	1 cut(s)	853
SfcI	CTRYAG	2 cut(s)	603, 788
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	289
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	194, 886
SmoI	CTYRAG	2 cut(s)	194, 886
Sse9I	AATT	5 cut(s)	471, 624, 651, 711, 943
SseBI	AGGCCT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	214, 253, 327
StuI	AGGCCT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	368, 490, 776
TaqI	TCGA	3 cut(s)	174, 195, 390
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	5 cut(s)	471, 624, 651, 711, 943
Tru1I	TTAA	3 cut(s)	357, 551, 710
Tru9I	TTAA	3 cut(s)	357, 551, 710
TscAI	CASTG	1 cut(s)	781
TseI	GCWGC	6 cut(s)	255, 511, 605, 725, 794, 932
TspDTI	ATGAA	1 cut(s)	914
TspRI	CASTG	1 cut(s)	781
VpaK11BI	GGWCC	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.