pycom15g29340

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006140
Physical Location & Seq
Forward (+)
26092709 .. 26096646
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
ATGCTAGGCGGGGATTGGGCGGGCCGTATCAGTGTAGGTAAAATTATAGCCCATCCAGATAGTCCGCAGCGCAGCCTCTTTCACTCCTCATCGGGCATCAACCATTGTCGCCGCCGGTGTCCTCTGGGTACTCGGGTGATGGCTGAAGTCCTACTAGGCATGCCGGGACCCTGGGCTGATGATTTTCGTGAAACGTCTGATCATTATACTACAAAGATTGGCGGATTACCTGACTGGCCTCTCCCTGAGGAGCCCGTCACGCCTGATCTGCTTAAGTGCAGTGCATGTCGAAGTAGATTAAGTCTTGTTGCACAGGTTTATGCCCCAATTTCCAGTAAAATCGTACAGATTGAAGAGCGTGTCATTTTTATTTTTGGTTGTCTAATGCCAAAATGTGGGAGCACTCCTCTTAGCTGGCGAGCGCTGCGTGTTCAAAAGCTACACAATGAGGAGGAGGAACCAATTACCTCTTCTCAGGAAGCGGTCCCTTCAACTTCATCAGTACCGGTTTCAAACGCCAGCTGGTGGGAGGATTTGGACGATGAAAATGATGAAGATATAAATCTAGAAGAGTTGGGTAAAGCATTTAATGATGCTGCGAGATTAGCTTCTACTACCAAGAAACCACATAGAAATGATCACAGTAAGACTTCTACAAAGCCATCTTCTTCAAGTCAGTTGGAAAGAGTGGCAGACATTGACACACCTGTGGTGCCTTGTTTTTATGTATACACTCAAAAAGAGTCATCTTCAAAGGATCTTACTTCTTTATGTTCAAACTACTCATCATTTTCCATTGCAAAAGAAGGAAATGATATTGAGGATCACGGACAAGATGAAATGTGGGCAGAGGAAGCTTATGAATATGATAAAGCTTTGACAGCTGACAGGACATACCTTAAGTTCAAGAAACGGTTGGATGCACACCCAGAACAATGTTTCAGATATTCATATGGTGGAAAGCCACTCCTGGCTACATCGGCTGAAGGAGATCCGGGGAGATGTAGTCTATGTGGTGGATCAAGGAAGTACGAGATGCAACTAATGCCCCCATTATTATATTTTCTACAAGAAGCAGCTGATGATTGTCAGAGGCAGTCACTGGAGAACTGGAACTGGATGACACTTATGGTATACACTTGTTCCAAGAGCTGCTGTCAACATGGTCAAGGAACGTCCAAGTATGGGAACTGGCTTGTGATAGAGGAAGCTGTTGTGGTACAAGTCGAGAAATCTTTTAATGGGCTAGCTGAACATGGTTATTTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

424

Amino Acids

47.33

Weight (kDa)

5.27

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 296 - 408 4.1e-30 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 712
AccB7I CCANNNNNTGG 2 cut(s) 395, 525
AccI GTMKAC 2 cut(s) 729, 1134
AciI CCGC 6 cut(s) 9, 20, 65, 112, 222, 482
AclWI GGATC 4 cut(s) 765, 831, 986, 1027
AcuI CTGAAG 2 cut(s) 165, 1005
AfaI GTAC 5 cut(s) 130, 345, 504, 1031, 1221
AfeI AGCGCT 1 cut(s) 423
AfiI CCNNNNNNNGG 3 cut(s) 395, 525, 1185
AflII CTTAAG 2 cut(s) 272, 899
AgeI ACCGGT 1 cut(s) 505
AgsI TTSAA 8 cut(s) 353, 434, 492, 513, 672, 753, 777, 907
AjnI CCWGG 2 cut(s) 170, 969
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
AleI CACNNNNGTG 1 cut(s) 707
Alw21I GWGCWC 1 cut(s) 404
AlwI GGATC 4 cut(s) 765, 831, 986, 1027
AlwNI CAGNNNCTG 1 cut(s) 1102
Ama87I CYCGRG 1 cut(s) 132
Aor51HI AGCGCT 1 cut(s) 423
AoxI GGCC 2 cut(s) 22, 236
ApeKI GCWGC 6 cut(s) 67, 72, 424, 596, 1076, 1152
AsiGI ACCGGT 1 cut(s) 505
AspLEI GCGC 2 cut(s) 72, 424
AspS9I GGNCC 3 cut(s) 22, 167, 484
AsuC2I CCSGG 2 cut(s) 165, 996
AsuHPI GGTGA 1 cut(s) 148
AsuNHI GCTAGC 1 cut(s) 1246
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 2 cut(s) 167, 484
AxyI CCTNAGG 1 cut(s) 246
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BanI GGYRCC 1 cut(s) 712
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 404
BbvI GCAGC 6 cut(s) 79, 84, 411, 583, 1088, 1139
BccI CCATC 3 cut(s) 60, 133, 670
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 2 cut(s) 172, 971
BclI TGATCA 2 cut(s) 199, 637
BcnI CCSGG 2 cut(s) 165, 996
BfaI CTAG 4 cut(s) 5, 155, 566, 1247
BfoI RGCGCY 1 cut(s) 425
BfrI CTTAAG 2 cut(s) 272, 899
BisI GCNGC 7 cut(s) 68, 73, 112, 425, 597, 1077, 1153
BlsI GCNGC 7 cut(s) 69, 74, 113, 426, 598, 1078, 1154
Bme1390I CCNGG 4 cut(s) 165, 172, 971, 996
Bme18I GGWCC 2 cut(s) 167, 484
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 22, 167, 484
BmiI GGNNCC 6 cut(s) 168, 169, 252, 459, 486, 714
BmrFI CCNGG 4 cut(s) 165, 172, 971, 996
BmsI GCATC 4 cut(s) 105, 583, 910, 1026
BmtI GCTAGC 1 cut(s) 1250
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 1 cut(s) 1124
BpuMI CCSGG 2 cut(s) 165, 996
BsaBI GATNNNNATC 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 170, 171, 995
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 991, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 395, 525, 1185
Bse118I RCCGGY 2 cut(s) 114, 505
Bse1I ACTGG 6 cut(s) 239, 333, 1107, 1115, 1121, 1196
Bse21I CCTNAGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 795
Bse8I GATNNNNATC 1 cut(s) 561
BseBI CCWGG 2 cut(s) 172, 971
BseDI CCNNGG 3 cut(s) 170, 171, 995
BseGI GGATG 3 cut(s) 52, 925, 1125
BseJI GATNNNNATC 1 cut(s) 561
BseLI CCNNNNNNNGG 3 cut(s) 395, 525, 1185
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 2 cut(s) 237, 488
BseNI ACTGG 6 cut(s) 239, 333, 1107, 1115, 1121, 1196
BseRI GAGGAG 5 cut(s) 76, 263, 396, 464, 467
BseXI GCAGC 6 cut(s) 79, 84, 411, 583, 1088, 1139
BsgI GTGCAG 1 cut(s) 298
BshFI GGCC 2 cut(s) 24, 238
BshNI GGYRCC 1 cut(s) 712
BshTI ACCGGT 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 4 cut(s) 115, 164, 506, 995
BslFI GGGAC 2 cut(s) 180, 470
BslI CCNNNNNNNGG 3 cut(s) 395, 525, 1185
BsmFI GGGAC 2 cut(s) 180, 470
BsnI GGCC 2 cut(s) 24, 238
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 255, 404
Bsp143I GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
BspACI CCGC 6 cut(s) 9, 20, 65, 112, 222, 482
BspANI GGCC 2 cut(s) 24, 238
BspCNI CTCAG 2 cut(s) 238, 487
BspHI TCATGA 1 cut(s) 1268
BspLI GGNNCC 6 cut(s) 168, 169, 252, 459, 486, 714
BspOI GCTAGC 1 cut(s) 1250
BspPI GGATC 4 cut(s) 765, 831, 986, 1027
BspQI GCTCTTC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 712
BspTI CTTAAG 2 cut(s) 272, 899
BsrDI GCAATG 1 cut(s) 795
BsrFI RCCGGY 2 cut(s) 114, 505
BsrI ACTGG 6 cut(s) 239, 333, 1107, 1115, 1121, 1196
BssAI RCCGGY 2 cut(s) 114, 505
BssECI CCNNGG 3 cut(s) 170, 171, 995
BssMI GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
BssNAI GTATAC 2 cut(s) 730, 1135
Bst1107I GTATAC 2 cut(s) 730, 1135
Bst2UI CCWGG 2 cut(s) 172, 971
Bst4CI ACNGT 2 cut(s) 644, 915
Bst6I CTCTTC 3 cut(s) 348, 475, 564
BstAFI CTTAAG 2 cut(s) 272, 899
BstAPI GCANNNNNTGC 1 cut(s) 1045
BstC8I GCNNGC 6 cut(s) 22, 161, 416, 420, 520, 1248
BstDEI CTNAG 3 cut(s) 246, 410, 474
BstF5I GGATG 3 cut(s) 52, 925, 1125
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 2 cut(s) 72, 424
BstKTI GATC 7 cut(s) 202, 268, 640, 760, 826, 994, 1022
BstMBI GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
BstMWI GCNNNNNNNGC 8 cut(s) 259, 268, 424, 605, 854, 881, 980, 1045
BstNI CCWGG 2 cut(s) 172, 971
BstNSI RCATGY 2 cut(s) 163, 288
BstSCI CCNGG 4 cut(s) 163, 170, 969, 994
BstV1I GCAGC 6 cut(s) 79, 84, 411, 583, 1088, 1139
BstX2I RGATCY 2 cut(s) 757, 991
BstYI RGATCY 2 cut(s) 757, 991
BstZ17I GTATAC 2 cut(s) 730, 1135
Bsu36I CCTNAGG 1 cut(s) 246
BsuRI GGCC 2 cut(s) 24, 238
BtsCI GGATG 3 cut(s) 52, 925, 1125
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 3 cut(s) 37, 286, 1100
Cac8I GCNNGC 6 cut(s) 22, 161, 416, 420, 520, 1248
CaiI CAGNNNCTG 1 cut(s) 1102
CciI TCATGA 1 cut(s) 1268
CfoI GCGC 2 cut(s) 72, 424
Cfr10I RCCGGY 2 cut(s) 114, 505
Cfr13I GGNCC 3 cut(s) 22, 167, 484
Csp6I GTAC 5 cut(s) 129, 344, 503, 1030, 1220
CspAI ACCGGT 1 cut(s) 505
CviAII CATG 5 cut(s) 160, 285, 1163, 1256, 1269
CviQI GTAC 5 cut(s) 129, 344, 503, 1030, 1220
DdeI CTNAG 3 cut(s) 246, 410, 474
DpnI GATC 7 cut(s) 201, 267, 639, 759, 825, 993, 1021
DpnII GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
Eam1104I CTCTTC 3 cut(s) 348, 475, 564
EarI CTCTTC 3 cut(s) 348, 475, 564
EciI GGCGGA 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 167, 484
Eco47III AGCGCT 1 cut(s) 423
Eco57I CTGAAG 2 cut(s) 165, 1005
Eco81I CCTNAGG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 170, 969
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 5 cut(s) 163, 288, 1166, 1259, 1272
FaqI GGGAC 2 cut(s) 180, 470
FatI CATG 5 cut(s) 159, 284, 1162, 1255, 1268
FauI CCCGC 2 cut(s) 2, 13
FauNDI CATATG 1 cut(s) 952
FbaI TGATCA 2 cut(s) 199, 637
FblI GTMKAC 2 cut(s) 729, 1134
Fnu4HI GCNGC 7 cut(s) 68, 73, 112, 425, 597, 1077, 1153
FokI GGATG 3 cut(s) 39, 932, 1132
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 7 cut(s) 68, 73, 112, 425, 597, 1077, 1153
FspBI CTAG 4 cut(s) 5, 155, 566, 1247
GlaI GCGC 2 cut(s) 71, 423
GluI GCNGC 7 cut(s) 68, 73, 112, 425, 597, 1077, 1153
GsuI CTGGAG 1 cut(s) 1124
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 2 cut(s) 24, 238
HapII CCGG 4 cut(s) 115, 164, 506, 995
HhaI GCGC 2 cut(s) 72, 424
Hin1II CATG 5 cut(s) 163, 288, 1166, 1259, 1272
Hin6I GCGC 2 cut(s) 70, 422
HinP1I GCGC 2 cut(s) 70, 422
HincII GTYRAC 1 cut(s) 1160
HindII GTYRAC 1 cut(s) 1160
HindIII AAGCTT 2 cut(s) 855, 873
HinfI GANTC 1 cut(s) 743
HpaII CCGG 4 cut(s) 115, 164, 506, 995
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 3 cut(s) 730, 1135, 1160
Hpy188I TCNGA 3 cut(s) 199, 944, 1092
Hpy188III TCNNGA 7 cut(s) 56, 188, 476, 566, 907, 1228, 1269
Hpy8I GTNNAC 3 cut(s) 730, 1135, 1160
HpyAV CCTTC 3 cut(s) 498, 800, 980
HpyCH4III ACNGT 2 cut(s) 644, 915
HpyCH4IV ACGT 2 cut(s) 194, 1175
HpyCH4V TGCA 6 cut(s) 279, 284, 311, 800, 923, 1039
HpyF10VI GCNNNNNNNGC 8 cut(s) 259, 268, 424, 605, 854, 881, 980, 1045
HpyF3I CTNAG 3 cut(s) 246, 410, 474
HpySE526I ACGT 2 cut(s) 194, 1175
Hsp92II CATG 5 cut(s) 163, 288, 1166, 1259, 1272
HspAI GCGC 2 cut(s) 70, 422
KflI GGGWCCC 1 cut(s) 167
Ksp22I TGATCA 2 cut(s) 199, 637
Kzo9I GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 2 cut(s) 250, 399
Lsp1109I GCAGC 6 cut(s) 79, 84, 411, 583, 1088, 1139
LweI GCATC 4 cut(s) 105, 583, 910, 1026
MaeI CTAG 4 cut(s) 5, 155, 566, 1247
MaeII ACGT 2 cut(s) 194, 1175
MaeIII GTNAC 2 cut(s) 256, 1098
MalI GATC 7 cut(s) 201, 267, 639, 759, 825, 993, 1021
MboI GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
MboII GAAGA 7 cut(s) 365, 462, 566, 581, 657, 660, 741
MflI RGATCY 2 cut(s) 757, 991
MhlI GDGCHC 2 cut(s) 255, 404
MluCI AATT 3 cut(s) 42, 327, 462
MlyI GAGTC 1 cut(s) 752
MmeI TCCRAC 2 cut(s) 660, 897
MseI TTAA 5 cut(s) 273, 299, 588, 900, 1239
MslI CAYNNNNRTG 2 cut(s) 633, 707
MspA1I CMGCKG 3 cut(s) 522, 884, 1079
MspCI CTTAAG 2 cut(s) 272, 899
MspI CCGG 4 cut(s) 115, 164, 506, 995
MspR9I CCNGG 4 cut(s) 165, 172, 971, 996
MvaI CCWGG 2 cut(s) 172, 971
MwoI GCNNNNNNNGC 8 cut(s) 259, 268, 424, 605, 854, 881, 980, 1045
NciI CCSGG 2 cut(s) 165, 996
NdeI CATATG 1 cut(s) 952
NdeII GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
NheI GCTAGC 1 cut(s) 1246
NlaIII CATG 5 cut(s) 163, 288, 1166, 1259, 1272
NlaIV GGNNCC 6 cut(s) 168, 169, 252, 459, 486, 714
NmuCI GTSAC 2 cut(s) 256, 1098
NspI RCATGY 2 cut(s) 163, 288
OliI CACNNNNGTG 1 cut(s) 707
PaeI GCATGC 1 cut(s) 163
PagI TCATGA 1 cut(s) 1268
PasI CCCWGGG 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 348
PflMI CCANNNNNTGG 2 cut(s) 395, 525
PinAI ACCGGT 1 cut(s) 505
PkrI GCNGC 7 cut(s) 69, 74, 113, 426, 598, 1078, 1154
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 170, 969
PspGI CCWGG 2 cut(s) 170, 969
PspN4I GGNNCC 6 cut(s) 168, 169, 252, 459, 486, 714
PspPI GGNCC 3 cut(s) 22, 167, 484
PspPPI RGGWCCY 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 1102
PsuI RGATCY 2 cut(s) 757, 991
PvuII CAGCTG 3 cut(s) 522, 884, 1079
RsaI GTAC 5 cut(s) 130, 345, 504, 1031, 1221
RsaNI GTAC 5 cut(s) 129, 344, 503, 1030, 1220
RseI CAYNNNNRTG 2 cut(s) 633, 707
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 5 cut(s) 273, 299, 588, 900, 1239
SatI GCNGC 7 cut(s) 68, 73, 112, 425, 597, 1077, 1153
Sau3AI GATC 7 cut(s) 199, 265, 637, 757, 823, 991, 1019
Sau96I GGNCC 3 cut(s) 22, 167, 484
SchI GAGTC 1 cut(s) 752
ScrFI CCNGG 4 cut(s) 165, 172, 971, 996
SduI GDGCHC 2 cut(s) 255, 404
SfaNI GCATC 4 cut(s) 105, 583, 910, 1026
SgrAI CRCCGGYG 1 cut(s) 114
SinI GGWCC 2 cut(s) 167, 484
SmiMI CAYNNNNRTG 2 cut(s) 633, 707
SmlI CTYRAG 2 cut(s) 272, 899
SmoI CTYRAG 2 cut(s) 272, 899
SphI GCATGC 1 cut(s) 163
Sse9I AATT 3 cut(s) 42, 327, 462
SsiI CCGC 6 cut(s) 9, 20, 65, 112, 222, 482
SspMI CTAG 4 cut(s) 5, 155, 566, 1247
StyD4I CCNGG 4 cut(s) 163, 170, 969, 994
TaaI ACNGT 2 cut(s) 644, 915
TaiI ACGT 2 cut(s) 197, 1178
TaqI TCGA 2 cut(s) 289, 1227
TasI AATT 3 cut(s) 42, 327, 462
TauI GCSGC 1 cut(s) 114
Tru1I TTAA 5 cut(s) 273, 299, 588, 900, 1239
Tru9I TTAA 5 cut(s) 273, 299, 588, 900, 1239
TscAI CASTG 3 cut(s) 37, 286, 1107
TseFI GTSAC 2 cut(s) 256, 1098
TseI GCWGC 6 cut(s) 67, 72, 424, 596, 1076, 1152
Tsp45I GTSAC 2 cut(s) 256, 1098
TspDTI ATGAA 6 cut(s) 486, 558, 567, 852, 876, 939
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 3 cut(s) 37, 286, 1107
Van91I CCANNNNNTGG 2 cut(s) 395, 525
Vha464I CTTAAG 2 cut(s) 272, 899
VpaK11BI GGWCC 2 cut(s) 167, 484
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 2 cut(s) 163, 288
XmiI GTMKAC 2 cut(s) 729, 1134
XspI CTAG 4 cut(s) 5, 155, 566, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.