Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0017762

Physical Location & Seq

Genomic Coordinates Forward (+)

27675944 .. 27676590

Gene Structure 647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGGTCAGGGCCTGAGCTGCGGAGAGCCTCGTGAGAATGGAGTCTTTGGAACTGTGGAGAATGGGGATTTGGGGCTTGTCGGAGCCATGGTGGAAGCTGACCCAAGTGTTTTGGAGCTGAGCAAAGGCCGCCGCCGGCTGTCTGCTCTGCATGTCGCCGCCGCAAATGGCCGGATCGAGGTTCTGTCTATGCTGTTGGATCGGTCTGTTATCAATCCGGATGTGGTGAATCGATACAAACAGACTCCGTTAATGTTGGCTGCGATGAATGGGAATATCACCTGTGTCCAAAAGCTTATCCAAGCAGGAGCAAATATTTTGATGTTTGATTCCCTGAATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_4

Protein Analysis

115

Amino Acids

12.08

Weight (kDa)

5.73

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	19 - 108	6.4e-14	Ankyrin repeats (3 copies)
Ank_4	PF13637	50 - 100	1.4e-10	Ankyrin repeats (many copies)
Ank_5	PF13857	65 - 110	4.6e-06	Ankyrin repeats (many copies)
Ank	PF00023	81 - 108	1.1e-06	Ankyrin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017762)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g30290
rosa_chinensis	RchiOBHm_Chr1g0313891 RchiOBHm_Chr5g0035641
rosa_laevigata	RLG00000028647 RLG00000028655
rosa_multiflora	Rmu_sc0001493.1_g000070 Rmu_sc0019734.1_g000002
rosa_samantha	Rh3AG278700 Rh4DG183500 Rh4DG183800 Rh5CG517100 Rh5DG450200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	5 cut(s)	21, 130, 133, 159, 162
AclWI	GGATC	2 cut(s)	182, 207
AcoI	YGGCCR	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	178
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	18, 98, 118, 295
AluI	AGCT	4 cut(s)	18, 98, 118, 295
AlwI	GGATC	2 cut(s)	182, 207
AlwNI	CAGNNNCTG	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	3 cut(s)	10, 127, 169
ApeKI	GCWGC	2 cut(s)	18, 260
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	238, 271
BauI	CACGAG	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	5, 247
BisI	GCNGC	6 cut(s)	19, 130, 133, 159, 162, 261
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	6 cut(s)	20, 131, 134, 160, 163, 262
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	14
Bpu1102I	GCTNAGC	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	5, 110
BseXI	GCAGC	2 cut(s)	5, 247
BshFI	GGCC	3 cut(s)	12, 129, 171
BshVI	ATCGAT	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	136, 172, 218
BslI	CCNNNNNNNGG	1 cut(s)	178
BsnI	GGCC	3 cut(s)	12, 129, 171
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	174, 199
Bsp1720I	GCTNAGC	1 cut(s)	119
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	5 cut(s)	21, 130, 133, 159, 162
BspANI	GGCC	3 cut(s)	12, 129, 171
BspCNI	CTCAG	2 cut(s)	6, 111
BspDI	ATCGAT	1 cut(s)	232
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	182, 207
BsrFI	RCCGGY	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	2 cut(s)	174, 199
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	14, 119
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	177, 202
BstMBI	GATC	2 cut(s)	174, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 129
BstNSI	RCATGY	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	5, 247
Bsu15I	ATCGAT	1 cut(s)	232
BsuRI	GGCC	3 cut(s)	12, 129, 171
BsuTUI	ATCGAT	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	137
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	232
CviAII	CATG	2 cut(s)	88, 152
DdeI	CTNAG	2 cut(s)	14, 119
DpnI	GATC	2 cut(s)	176, 201
DpnII	GATC	2 cut(s)	174, 199
EaeI	YGGCCR	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	91, 155
FaiI	YATR	3 cut(s)	89, 153, 191
FatI	CATG	2 cut(s)	87, 151
Fnu4HI	GCNGC	6 cut(s)	19, 130, 133, 159, 162, 261
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	6 cut(s)	19, 130, 133, 159, 162, 261
GluI	GCNGC	6 cut(s)	19, 130, 133, 159, 162, 261
HaeIII	GGCC	3 cut(s)	12, 129, 171
HapII	CCGG	3 cut(s)	136, 172, 218
Hin1II	CATG	2 cut(s)	91, 155
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	4 cut(s)	42, 229, 244, 329
HpaII	CCGG	3 cut(s)	136, 172, 218
HphI	GGTGA	2 cut(s)	238, 271
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	2 cut(s)	32, 218
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 129
HpyF3I	CTNAG	2 cut(s)	14, 119
Hsp92II	CATG	2 cut(s)	91, 155
Kpn2I	TCCGGA	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	2 cut(s)	174, 199
LmnI	GCTCC	3 cut(s)	83, 115, 308
LpnPI	CCDG	6 cut(s)	26, 149, 185, 231, 291, 295
Lsp1109I	GCAGC	2 cut(s)	5, 247
MalI	GATC	2 cut(s)	176, 201
MboI	GATC	2 cut(s)	174, 199
MlyI	GAGTC	2 cut(s)	51, 238
MmeI	TCCRAC	2 cut(s)	61, 177
MnlI	CCTC	2 cut(s)	39, 172
MroI	TCCGGA	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	135
MseI	TTAA	1 cut(s)	251
MspI	CCGG	3 cut(s)	136, 172, 218
MwoI	GCNNNNNNNGC	2 cut(s)	18, 129
NaeI	GCCGGC	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	174, 199
NgoMIV	GCCGGC	1 cut(s)	135
NlaIII	CATG	2 cut(s)	91, 155
NlaIV	GGNNCC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	229, 329
PkrI	GCNGC	6 cut(s)	20, 131, 134, 160, 163, 262
PleI	GAGTC	2 cut(s)	50, 238
PpsI	GAGTC	2 cut(s)	50, 238
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	10
PstNI	CAGNNNCTG	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	6 cut(s)	19, 130, 133, 159, 162, 261
Sau3AI	GATC	2 cut(s)	174, 199
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	2 cut(s)	51, 238
SetI	ASST	6 cut(s)	20, 100, 120, 183, 284, 297
SsiI	CCGC	5 cut(s)	21, 130, 133, 159, 162
SspI	AATATT	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	177, 232
TaqII	GACCGA	1 cut(s)	192
TauI	GCSGC	4 cut(s)	132, 135, 161, 164
TfiI	GAWTC	2 cut(s)	229, 329
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TseI	GCWGC	2 cut(s)	18, 260
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	237
XceI	RCATGY	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.