Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017762

Physical Location & Seq

Genomic Coordinates Forward (+)

72290851 .. 72293054

Gene Structure 2204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG517100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGTCAGGGACTTAGTTGCGGAGCGAGTGACGAGCATGGGCTCTTCAGCGCCGTGCAACTTGGGGACCTGGAGACGGTGGAGGCTTTGGTAGAGAGAGACTCGGCAATCTTGCACCACACCACCATGTATGATCATCACTCTGCTCTTCATATTGCTGCCGCTAATGGTCAGATCGAGATTCTTTCTCTGCTGTTGGAGCGATCTGTAAATCCTGATGCGTTGAATCGTCACAAGCAGACTCCGCTTATGTTGGCTGCAATGCATGGCAAGATCTCATGCGTGCGAAAGCTTCTTGAAGTGGGAGCAAACAAACCAACCACATGCTGGTATTTCACAAAAGACTTATTTGCAAAGAACAAGCTTTACACATTCTCCGCTTGGATAGAAGTGAGTGGTGGTAGAGGTGTTCCAGTAACAGCTATTTTCAAGACAAGTGCTGGATCATTCATTCATGCTGGTGCTATTGTCGCGGAATCCATGCTCAAGGGTGGCCTAACTGTGAATGCATCAAGCCCAGCTGAGCTTTATTTTGAGAGTAAGAACACATCGGTTGAGATTTGGGTTGATAGCGTCTCATTACAACCATTCAACAAAAAGGAATGGAAGTCTCATTATGATCAAAGCATTGAGAAGAACCGAAAGAGCAATGTGAGAATCCAAGCAGTTGATGCAAAGGAAACCCTCTACGAAATGCAACAATATCCATCCAACAAAAGGCTCCCAGCTTCCCTTTCGGATGCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

249

Amino Acids

27.39

Weight (kDa)

6.8

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	15 - 106	3.9e-16	Ankyrin repeats (3 copies)
Ank_4	PF13637	50 - 99	1.5e-08	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017762)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g30290
rosa_chinensis	RchiOBHm_Chr1g0313891 RchiOBHm_Chr5g0035641
rosa_laevigata	RLG00000028647 RLG00000028655
rosa_multiflora	Rmu_sc0001493.1_g000070 Rmu_sc0019734.1_g000002
rosa_samantha	Rh3AG278700 Rh4DG183500 Rh4DG183800 Rh5CG517100 Rh5DG450200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	327
AccII	CGCG	1 cut(s)	473
AciI	CCGC	5 cut(s)	21, 162, 245, 378, 473
AclWI	GGATC	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	31
AfiI	CCNNNNNNNGG	3 cut(s)	76, 327, 717
AgsI	TTSAA	4 cut(s)	226, 299, 430, 592
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	6 cut(s)	292, 364, 422, 521, 526, 728
AluI	AGCT	6 cut(s)	292, 364, 422, 521, 526, 728
Alw26I	GTCTC	4 cut(s)	68, 93, 580, 615
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	158, 257
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	145, 244
BccI	CCATC	1 cut(s)	715
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	2 cut(s)	133, 619
BcoDI	GTCTC	4 cut(s)	68, 93, 580, 615
BfoI	RGCGCY	1 cut(s)	54
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	3 cut(s)	159, 162, 258
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	3 cut(s)	160, 163, 259
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	68, 722
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	4 cut(s)	208, 518, 661, 730
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	470
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 327, 717
Bse1I	ACTGG	1 cut(s)	413
Bse3DI	GCAATG	2 cut(s)	267, 655
BseBI	CCWGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	707, 745
BseLI	CCNNNNNNNGG	3 cut(s)	76, 327, 717
BseMI	GCAATG	2 cut(s)	267, 655
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	145, 244
BseYI	CCCAGC	2 cut(s)	517, 724
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	24, 80
BslI	CCNNNNNNNGG	3 cut(s)	76, 327, 717
BsmAI	GTCTC	4 cut(s)	68, 93, 580, 615
BsmBI	CGTCTC	2 cut(s)	68, 580
BsmFI	GGGAC	2 cut(s)	24, 80
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	5 cut(s)	21, 162, 245, 378, 473
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	2 cut(s)	68, 722
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	2 cut(s)	50, 153
BsrDI	GCAATG	2 cut(s)	267, 655
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	79, 502
Bst6I	CTCTTC	2 cut(s)	50, 153
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	14, 522
BstF5I	GGATG	2 cut(s)	707, 745
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	6 cut(s)	136, 177, 206, 276, 446, 622
BstMAI	GTCTC	4 cut(s)	68, 93, 580, 615
BstMBI	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	199, 244, 470, 671
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	2 cut(s)	145, 244
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	707, 745
Cac8I	GCNNGC	1 cut(s)	284
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	562
CviAII	CATG	7 cut(s)	38, 127, 266, 279, 324, 455, 481
DdeI	CTNAG	2 cut(s)	14, 522
DpnI	GATC	6 cut(s)	135, 176, 205, 275, 445, 621
DpnII	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
Eam1104I	CTCTTC	2 cut(s)	50, 153
EarI	CTCTTC	2 cut(s)	50, 153
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	69
EcoT22I	ATGCAT	2 cut(s)	267, 511
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	2 cut(s)	68, 580
FaeI	CATG	7 cut(s)	41, 130, 269, 282, 327, 458, 484
FaqI	GGGAC	2 cut(s)	24, 80
FatI	CATG	7 cut(s)	37, 126, 265, 278, 323, 454, 480
FbaI	TGATCA	2 cut(s)	133, 619
Fnu4HI	GCNGC	3 cut(s)	159, 162, 258
FokI	GGATG	1 cut(s)	694
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	159, 162, 258
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	159, 162, 258
GsaI	CCCAGC	2 cut(s)	521, 728
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	495
HgaI	GACGC	1 cut(s)	562
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	7 cut(s)	41, 130, 269, 282, 327, 458, 484
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	290, 362
HinfI	GANTC	6 cut(s)	101, 181, 226, 241, 476, 657
Hpy188I	TCNGA	2 cut(s)	174, 739
Hpy188III	TCNNGA	4 cut(s)	178, 215, 296, 430
HpyCH4III	ACNGT	2 cut(s)	79, 502
HpyCH4V	TGCA	9 cut(s)	58, 115, 260, 265, 353, 509, 674, 697, 743
HpyF10VI	GCNNNNNNNGC	4 cut(s)	199, 244, 470, 671
HpyF3I	CTNAG	2 cut(s)	14, 522
Hsp92II	CATG	7 cut(s)	41, 130, 269, 282, 327, 458, 484
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	2 cut(s)	133, 619
Kzo9I	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
LguI	GCTCTTC	2 cut(s)	50, 153
LmnI	GCTCC	4 cut(s)	23, 199, 305, 726
LpnPI	CCDG	9 cut(s)	56, 83, 228, 313, 426, 426, 444, 531, 738
Lsp1109I	GCAGC	2 cut(s)	145, 244
LweI	GCATC	4 cut(s)	208, 518, 661, 730
MaeIII	GTNAC	3 cut(s)	29, 230, 415
MalI	GATC	6 cut(s)	135, 176, 205, 275, 445, 621
MboI	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
MboII	GAAGA	3 cut(s)	37, 140, 646
MflI	RGATCY	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	95, 235
MmeI	TCCRAC	2 cut(s)	177, 735
MnlI	CCTC	3 cut(s)	76, 398, 695
Mph1103I	ATGCAT	2 cut(s)	267, 511
MslI	CAYNNNNRTG	2 cut(s)	125, 459
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	4 cut(s)	199, 244, 470, 671
NdeII	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
NlaIII	CATG	7 cut(s)	41, 130, 269, 282, 327, 458, 484
NlaIV	GGNNCC	2 cut(s)	68, 722
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	29, 230
NsiI	ATGCAT	2 cut(s)	267, 511
NspI	RCATGY	1 cut(s)	327
PciSI	GCTCTTC	2 cut(s)	50, 153
PctI	GAATGC	1 cut(s)	511
PfeI	GAWTC	4 cut(s)	181, 226, 476, 657
PflMI	CCANNNNNTGG	1 cut(s)	327
PkrI	GCNGC	3 cut(s)	160, 163, 259
PleI	GAGTC	2 cut(s)	95, 235
PpsI	GAGTC	2 cut(s)	95, 235
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	69
PspFI	CCCAGC	2 cut(s)	517, 724
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	68, 722
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PsrI	GAACNNNNNNTAC	2 cut(s)	350, 382
PsuI	RGATCY	1 cut(s)	273
PvuII	CAGCTG	1 cut(s)	521
RseI	CAYNNNNRTG	2 cut(s)	125, 459
SapI	GCTCTTC	2 cut(s)	50, 153
SatI	GCNGC	3 cut(s)	159, 162, 258
Sau3AI	GATC	6 cut(s)	133, 174, 203, 273, 443, 619
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	95, 235
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	72, 294, 366, 409, 424, 523, 528, 730
SfaNI	GCATC	4 cut(s)	208, 518, 661, 730
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	125, 459
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
SsiI	CCGC	5 cut(s)	21, 162, 245, 378, 473
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	79, 502
TaqI	TCGA	1 cut(s)	177
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	4 cut(s)	181, 226, 476, 657
TseFI	GTSAC	2 cut(s)	29, 230
TseI	GCWGC	2 cut(s)	158, 257
Tsp45I	GTSAC	2 cut(s)	29, 230
TspDTI	ATGAA	3 cut(s)	140, 439, 443
Van91I	CCANNNNNTGG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	67
XceI	RCATGY	1 cut(s)	327
XcmI	CCANNNNNNNNNTGG	1 cut(s)	324
Zsp2I	ATGCAT	2 cut(s)	267, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.