Rh4DG183500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017762
Physical Location & Seq
Forward (+)
36359194 .. 36362200
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG183500.1

Sequence Viewer

Length: 324 bp
ATGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCGGCCGAATACTCCCACCACGACCCCACTGTCGCCCGAATCAACAACGGCAGCTTCGAGTCCTGCCCCGACTCCGTCCTCTAGGCCCAGCGCCCCTGGCAGCTCAACTGCCCAGGAAGCACTCCGTTGCATTTGGCAGCAAGAGGGGGATCTCTGGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGTATAATTCCATTTCCATCTATATTCAAAAATCAAATTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.46

Weight (kDa)

6.54

Isoelectric Point (pI)

76.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 228
AccII CGCG 2 cut(s) 67, 260
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 222, 282
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 1 cut(s) 315
AgsI TTSAA 1 cut(s) 307
AjnI CCWGG 2 cut(s) 160, 177
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 2 cut(s) 119, 168
AluI AGCT 2 cut(s) 119, 168
AlwI GGATC 2 cut(s) 222, 282
AoxI GGCC 2 cut(s) 68, 149
ApeKI GCWGC 3 cut(s) 116, 165, 202
ApoI RAATTY 1 cut(s) 315
AspLEI GCGC 2 cut(s) 158, 262
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 42
BbvI GCAGC 3 cut(s) 128, 177, 214
BccI CCATC 2 cut(s) 265, 304
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 2 cut(s) 162, 179
BfaI CTAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 4 cut(s) 68, 117, 166, 203
BlsI GCNGC 4 cut(s) 69, 118, 167, 204
Bme1390I CCNGG 2 cut(s) 162, 179
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 162, 179
BsaJI CCNNGG 2 cut(s) 160, 177
BseBI CCWGG 2 cut(s) 162, 179
BseDI CCNNGG 2 cut(s) 160, 177
BseX3I CGGCCG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 128, 177, 214
BseYI CCCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 2 cut(s) 67, 260
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 2 cut(s) 70, 151
BsiEI CGRYCG 1 cut(s) 71
BsnI GGCC 2 cut(s) 70, 151
Bsp143I GATC 3 cut(s) 214, 255, 274
BspACI CCGC 1 cut(s) 67
BspANI GGCC 2 cut(s) 70, 151
BspFNI CGCG 2 cut(s) 67, 260
BspPI GGATC 2 cut(s) 222, 282
BssECI CCNNGG 2 cut(s) 160, 177
BssMI GATC 3 cut(s) 214, 255, 274
BssNAI GTATAC 1 cut(s) 229
Bst1107I GTATAC 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 162, 179
Bst4CI ACNGT 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 250
BstFNI CGCG 2 cut(s) 67, 260
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 2 cut(s) 158, 262
BstKTI GATC 3 cut(s) 217, 258, 277
BstMBI GATC 3 cut(s) 214, 255, 274
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 4 cut(s) 162, 182, 250, 259
BstNI CCWGG 2 cut(s) 162, 179
BstSCI CCNGG 2 cut(s) 160, 177
BstUI CGCG 2 cut(s) 67, 260
BstV1I GCAGC 3 cut(s) 128, 177, 214
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 229
BstZI CGGCCG 1 cut(s) 68
BsuRI GGCC 2 cut(s) 70, 151
BtsIMutI CAGTG 1 cut(s) 92
CfoI GCGC 2 cut(s) 158, 262
Cfr13I GGNCC 1 cut(s) 150
CviAII CATG 1 cut(s) 245
CviJI RGCY 5 cut(s) 33, 70, 119, 151, 168
CviKI_1 RGCY 5 cut(s) 33, 70, 119, 151, 168
DpnI GATC 3 cut(s) 216, 257, 276
DpnII GATC 3 cut(s) 214, 255, 274
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 68
EagI CGGCCG 1 cut(s) 68
EclXI CGGCCG 1 cut(s) 68
Eco52I CGGCCG 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 160, 177
FaeI CATG 1 cut(s) 248
FaiI YATR 4 cut(s) 229, 246, 284, 302
FatI CATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 68, 117, 166, 203
Fsp4HI GCNGC 4 cut(s) 68, 117, 166, 203
FspBI CTAG 1 cut(s) 147
GlaI GCGC 2 cut(s) 157, 261
GluI GCNGC 4 cut(s) 68, 117, 166, 203
GsaI CCCAGC 1 cut(s) 156
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 70, 151
HhaI GCGC 2 cut(s) 158, 262
Hin1II CATG 1 cut(s) 248
Hin6I GCGC 2 cut(s) 156, 260
HinP1I GCGC 2 cut(s) 156, 260
HinfI GANTC 4 cut(s) 7, 104, 124, 136
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 220
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 195, 253
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 182, 250, 259
Hsp92II CATG 1 cut(s) 248
HspAI GCGC 2 cut(s) 156, 260
Kzo9I GATC 3 cut(s) 214, 255, 274
LpnPI CCDG 7 cut(s) 141, 147, 164, 166, 174, 191, 205
Lsp1109I GCAGC 3 cut(s) 128, 177, 214
MaeI CTAG 1 cut(s) 147
MalI GATC 3 cut(s) 216, 257, 276
MboI GATC 3 cut(s) 214, 255, 274
MflI RGATCY 1 cut(s) 214
MluCI AATT 2 cut(s) 285, 315
MlyI GAGTC 2 cut(s) 130, 133
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 5 cut(s) 33, 66, 154, 202, 226
MspR9I CCNGG 2 cut(s) 162, 179
MvaI CCWGG 2 cut(s) 162, 179
MvnI CGCG 2 cut(s) 67, 260
MwoI GCNNNNNNNGC 4 cut(s) 162, 182, 250, 259
NdeII GATC 3 cut(s) 214, 255, 274
NlaIII CATG 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 2 cut(s) 7, 104
PflFI GACNNNGTC 1 cut(s) 139
PkrI GCNGC 4 cut(s) 69, 118, 167, 204
PleI GAGTC 2 cut(s) 130, 132
PpsI GAGTC 2 cut(s) 130, 132
Psp6I CCWGG 2 cut(s) 160, 177
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 160, 177
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 139
SatI GCNGC 4 cut(s) 68, 117, 166, 203
Sau3AI GATC 3 cut(s) 214, 255, 274
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 2 cut(s) 130, 133
ScrFI CCNGG 2 cut(s) 162, 179
SetI ASST 2 cut(s) 121, 170
Sse9I AATT 2 cut(s) 285, 315
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 160, 177
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 285, 315
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 7, 104
TscAI CASTG 1 cut(s) 99
TseI GCWGC 3 cut(s) 116, 165, 202
TspDTI ATGAA 1 cut(s) 36
TspGWI ACGGA 3 cut(s) 129, 179, 309
TspRI CASTG 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 139
XapI RAATTY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.