Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0017762

Physical Location & Seq

Genomic Coordinates Forward (+)

71799357 .. 71800582

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG450200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTCAGGGACTGAGTTGCGGAGCGAGTGACGAGCATGGGCTCTTCAGCGCCGTGCAACTTGGGGACCTGGAGACGGTGGAGGCTTTGGTAGAGAGAGACTCGGCTATCTTGCGTCACACCACCGTGTATGATCGTCACTCTGCTCTTCATATTGCTGCCGCTAATGGCCAGATCGAGACTGAGAAATTGGTGTTTACAGCTGCCCAGGAAGCACTCCGCTGCATTTGGCGGCAAGAGGGGGATCTCTGGATTGTATACGAGGATTGTTGGCATGGGGTGCAGATCGCGCTCAAAGAGATGGATCGGGGTATAATTCCATTTCCATCTATATTCAAAAATCAAATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051704 GO:0051707 GO:0051865 GO:0070647 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 Ank_3 Ank_4 Ank_5

Protein Analysis

117

Amino Acids

13.06

Weight (kDa)

4.92

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017762)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g30290
rosa_chinensis	RchiOBHm_Chr1g0313891 RchiOBHm_Chr5g0035641
rosa_laevigata	RLG00000028647 RLG00000028655
rosa_multiflora	Rmu_sc0001493.1_g000070 Rmu_sc0019734.1_g000002
rosa_samantha	Rh3AG278700 Rh4DG183500 Rh4DG183800 Rh5CG517100 Rh5DG450200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	290
AciI	CCGC	4 cut(s)	21, 162, 220, 232
AclWI	GGATC	2 cut(s)	252, 312
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	69, 207
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	3 cut(s)	68, 93, 173
AlwI	GGATC	2 cut(s)	252, 312
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	3 cut(s)	158, 203, 222
ApoI	RAATTY	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	53, 292
AspS9I	GGNCC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	145, 190, 209
BccI	CCATC	2 cut(s)	295, 334
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	71, 209
BcoDI	GTCTC	3 cut(s)	68, 93, 173
BfmI	CTRYAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	5 cut(s)	159, 162, 204, 223, 233
BlsI	GCNGC	5 cut(s)	160, 163, 205, 224, 234
Bme1390I	CCNGG	2 cut(s)	71, 209
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	2 cut(s)	71, 209
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
BpmI	CTGGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	71, 209
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	5, 174
BseXI	GCAGC	3 cut(s)	145, 190, 209
BsgI	GTGCAG	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	24, 80
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	3 cut(s)	68, 93, 173
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	24, 80
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	133, 174, 244, 285, 304
BspACI	CCGC	4 cut(s)	21, 162, 220, 232
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	6, 175
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	252, 312
BspQI	GCTCTTC	2 cut(s)	50, 153
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	5 cut(s)	133, 174, 244, 285, 304
BssNAI	GTATAC	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	71, 209
Bst4CI	ACNGT	2 cut(s)	79, 127
Bst6I	CTCTTC	2 cut(s)	50, 153
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	14, 183
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 292
BstKTI	GATC	5 cut(s)	136, 177, 247, 288, 307
BstMAI	GTCTC	3 cut(s)	68, 93, 173
BstMBI	GATC	5 cut(s)	133, 174, 244, 285, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 280, 289
BstNI	CCWGG	2 cut(s)	71, 209
BstSCI	CCNGG	2 cut(s)	69, 207
BstSFI	CTRYAG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	3 cut(s)	145, 190, 209
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZ17I	GTATAC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	2 cut(s)	53, 292
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	104
CviAII	CATG	2 cut(s)	38, 275
CviJI	RGCY	5 cut(s)	43, 86, 107, 171, 203
CviKI_1	RGCY	5 cut(s)	43, 86, 107, 171, 203
DdeI	CTNAG	2 cut(s)	14, 183
DpnI	GATC	5 cut(s)	135, 176, 246, 287, 306
DpnII	GATC	5 cut(s)	133, 174, 244, 285, 304
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	2 cut(s)	50, 153
EarI	CTCTTC	2 cut(s)	50, 153
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	2 cut(s)	69, 207
EcoT38I	GRGCYC	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	41, 278
FaiI	YATR	7 cut(s)	39, 132, 153, 259, 276, 314, 332
FaqI	GGGAC	2 cut(s)	24, 80
FatI	CATG	2 cut(s)	37, 274
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	5 cut(s)	159, 162, 204, 223, 233
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	5 cut(s)	159, 162, 204, 223, 233
GlaI	GCGC	2 cut(s)	52, 291
GluI	GCNGC	5 cut(s)	159, 162, 204, 223, 233
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	171
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	2 cut(s)	53, 292
Hin1II	CATG	2 cut(s)	41, 278
Hin6I	GCGC	2 cut(s)	51, 290
HinP1I	GCGC	2 cut(s)	51, 290
HinfI	GANTC	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	198, 259
Hpy188III	TCNNGA	2 cut(s)	178, 250
Hpy8I	GTNNAC	2 cut(s)	198, 259
HpyCH4III	ACNGT	2 cut(s)	79, 127
HpyCH4V	TGCA	3 cut(s)	58, 225, 283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 280, 289
HpyF3I	CTNAG	2 cut(s)	14, 183
Hsp92II	CATG	2 cut(s)	41, 278
HspAI	GCGC	2 cut(s)	51, 290
Kzo9I	GATC	5 cut(s)	133, 174, 244, 285, 304
LguI	GCTCTTC	2 cut(s)	50, 153
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	56, 83, 185, 194, 221, 235
Lsp1109I	GCAGC	3 cut(s)	145, 190, 209
MaeIII	GTNAC	3 cut(s)	29, 116, 137
MalI	GATC	5 cut(s)	135, 176, 246, 287, 306
MboI	GATC	5 cut(s)	133, 174, 244, 285, 304
MboII	GAAGA	2 cut(s)	37, 140
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	3 cut(s)	188, 315, 345
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	76, 232, 256
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	203, 222
MspR9I	CCNGG	2 cut(s)	71, 209
MvaI	CCWGG	2 cut(s)	71, 209
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	212, 280, 289
NdeII	GATC	5 cut(s)	133, 174, 244, 285, 304
NlaIII	CATG	2 cut(s)	41, 278
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	3 cut(s)	29, 116, 137
OliI	CACNNNNGTG	1 cut(s)	125
PciSI	GCTCTTC	2 cut(s)	50, 153
PkrI	GCNGC	5 cut(s)	160, 163, 205, 224, 234
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	69, 207
PspGI	CCWGG	2 cut(s)	69, 207
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	125
SapI	GCTCTTC	2 cut(s)	50, 153
SatI	GCNGC	5 cut(s)	159, 162, 204, 223, 233
Sau3AI	GATC	5 cut(s)	133, 174, 244, 285, 304
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	71, 209
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	2 cut(s)	72, 205
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	188, 315, 345
SsiI	CCGC	4 cut(s)	21, 162, 220, 232
StyD4I	CCNGG	2 cut(s)	69, 207
TaaI	ACNGT	2 cut(s)	79, 127
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	188, 315, 345
TauI	GCSGC	2 cut(s)	164, 235
TseFI	GTSAC	3 cut(s)	29, 116, 137
TseI	GCWGC	3 cut(s)	158, 203, 222
Tsp45I	GTSAC	3 cut(s)	29, 116, 137
TspDTI	ATGAA	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.